jgi.p|Nanoce1779_2|584904, mRNA_3201 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584904
Unique NamemRNA_3201
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length598
Alignment locationscaffold_7:903752..904349 -

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Properties
Property NameValue
TranscriptId584990
TrackFilteredModels2
ProteinId584904
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:903752..904349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584904gene_3201Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584904mRNA_3201-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3201CDS_3201Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3201 ID=mRNA_3201|Name=jgi.p|Nanoce1779_2|584904|organism=Nannochloropsis oceanica|type=mRNA|length=598bp
CACACCCTTCAACCTGCCCAATGCGCAACCTTTTCCCTATATCTTGTCAA
ATTTCATTTGTTTGGCTTCGTTGCTGGTGGAGCTGGTGATGATAGTGGTG
GTCGTTGTACTGGAGGTGGACCATGAAAAAGATTGAAAACTGTTCATCCC
CTTCTTTTCGCTTAAGTCTCGTATGTCTTCTCTTCTTTTCAACCTGTACC
GCTCTTTCTTGCCATCACACACACGTGCTATTTGTGCTGTTGTATAATTG
CTTTTATCCTTGCGCATGCTCCCTCTCTCTCTCACACACAAAACACGTAC
AAAAAAACGGTAAGCTGTCACTTTATTTCCTCTTCGCCTGCACTTGCCAG
CGCTATCGGAAGAGTTTTCACCCCCCTGGCGTGGTATCGATGGACATCAA
TAATTTGTTTCATACACACACAAGACACCATGATCGACCACTACTGAATG
CTGCTGTTCTCTTATTATTTCTTTACTCTTTCTCCTTCTCATTTGCCTTC
TTTTCCTTGTCCTTGTCCTTGATCTTCTTCTTCTCCTCCTCCTCTTCTCG
CGTCATATTCGTTCATTTTTCTTCGCGTATGTACCTTCTTTGACTCCG
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protein sequence of jgi.p|Nanoce1779_2|584904

>mRNA_3201-protein ID=mRNA_3201-protein|Name=jgi.p|Nanoce1779_2|584904|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MKKIENCSSPSFRLSLVCLLFFSTCTALSCHHTHVLFVLLYNCFYPCACS
LSLSHTKHVQKNGKLSLYFLFACTCQRYRKSFHPPGVVSMDINNLFHTHT
RHHDRPLLNAAVLLLFLYSFSFSFAFFSLSLSLIFFFSSSSSRVIFVHFS
SRMYLL*
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mRNA from alignment at scaffold_7:903752..904349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3201 ID=mRNA_3201|Name=jgi.p|Nanoce1779_2|584904|organism=Nannochloropsis oceanica|type=mRNA|length=598bp|location=Sequence derived from alignment at scaffold_7:903752..904349- (Nannochloropsis oceanica)
CACACCCTTCAACCTGCCCAATGCGCAACCTTTTCCCTATATCTTGTCAA
ATTTCATTTGTTTGGCTTCGTTGCTGGTGGAGCTGGTGATGATAGTGGTG
GTCGTTGTACTGGAGGTGGACCATGAAAAAGATTGAAAACTGTTCATCCC
CTTCTTTTCGCTTAAGTCTCGTATGTCTTCTCTTCTTTTCAACCTGTACC
GCTCTTTCTTGCCATCACACACACGTGCTATTTGTGCTGTTGTATAATTG
CTTTTATCCTTGCGCATGCTCCCTCTCTCTCTCACACACAAAACACGTAC
AAAAAAACGGTAAGCTGTCACTTTATTTCCTCTTCGCCTGCACTTGCCAG
CGCTATCGGAAGAGTTTTCACCCCCCTGGCGTGGTATCGATGGACATCAA
TAATTTGTTTCATACACACACAAGACACCATGATCGACCACTACTGAATG
CTGCTGTTCTCTTATTATTTCTTTACTCTTTCTCCTTCTCATTTGCCTTC
TTTTCCTTGTCCTTGTCCTTGATCTTCTTCTTCTCCTCCTCCTCTTCTCG
CGTCATATTCGTTCATTTTTCTTCGCGTATGTACCTTCTTTGACTCCG
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Coding sequence (CDS) from alignment at scaffold_7:903752..904349-

>mRNA_3201 ID=mRNA_3201|Name=jgi.p|Nanoce1779_2|584904|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_7:903752..904349- (Nannochloropsis oceanica)
ATGAAAAAGATTGAAAACTGTTCATCCCCTTCTTTTCGCTTAAGTCTCGT
ATGTCTTCTCTTCTTTTCAACCTGTACCGCTCTTTCTTGCCATCACACAC
ACGTGCTATTTGTGCTGTTGTATAATTGCTTTTATCCTTGCGCATGCTCC
CTCTCTCTCTCACACACAAAACACGTACAAAAAAACGGTAAGCTGTCACT
TTATTTCCTCTTCGCCTGCACTTGCCAGCGCTATCGGAAGAGTTTTCACC
CCCCTGGCGTGGTATCGATGGACATCAATAATTTGTTTCATACACACACA
AGACACCATGATCGACCACTACTGAATGCTGCTGTTCTCTTATTATTTCT
TTACTCTTTCTCCTTCTCATTTGCCTTCTTTTCCTTGTCCTTGTCCTTGA
TCTTCTTCTTCTCCTCCTCCTCTTCTCGCGTCATATTCGTTCATTTTTCT
TCGCGTATGTACCTTCTTTGA
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Synonyms
Publications