jgi.p|Nanoce1779_2|625250, mRNA_3200 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|625250
Unique Name	mRNA_3200
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2402
Alignment location	scaffold_7:901455..904349 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625336
Track	FilteredModels2
ProteinId	625250

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:901455..904349 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625250	gene_3200	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625250	mRNA_3200-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3200	CDS_3200	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:901455..904349+
coding sequence from alignment at scaffold_7:901455..904349+

mRNA sequence

>mRNA_3200 ID=mRNA_3200|Name=jgi.p|Nanoce1779_2|625250|organism=Nannochloropsis oceanica|type=mRNA|length=2402bp
GGGGATGCTCTCTCGCTGTTGGTTCACTCGATATCTCCATCCCACGACGC
AACAACCTCGGCAAGTGTATATGATACATAATCCTCACATTTGTCGAAAA
ACGGGATGTAGTGGGTCCTCCAGAAGCTTTCGATAAAGCAATGATCATCT
TTCAGGCTCGCGACGCCATTCATCATCACCATTATTAATGGTTGTATTGT
ATAGATCTAAACCCTTGGGGCTTAAACAACCACCCGAAGGAACTTGCACA
TCCCATCCTCCACGTGCACTGCCGCCACGGCGCCAGGCATATCACGGGCA
CCCGCAGCAAAACAACCATGCCCGCATGTATTTGGTGGAGCGCGGGGCTC
AACCCCATCGAAGACGCCAACTATCGGTACAAAATGCCCCGCATCTTGGC
TAAAGTGGAGGGGCGTGGAAACGGGATAAAAACCGTCGTTATCAACATGA
AAGACGTCGCCTCTGCCCTCCACCGCATGCCCGCAGAAGTCACCAAATTC
TTTGGCACGGAACTTGGCGCCCAGACCACCTACAGGGAAGAAACGGAGCG
AGCGGTGGTGAACGGCGCGCATTCTGCGCCTGCGCTGCAGGCGCTTTTGT
GCCGGTACATCCAGGGGTTTGTCCTTTGTCCCTCTTGTGGGTTGCCTGAG
ACGGCCTACAAGATCAAAGGGGGGGTGATTTATCAGAAATGTGACGCGTG
TGGGGAGAAGAGTATGTGTGATATGAGTCATAAATTGACGACATTCATCA
TTAACACGCATAAGAAGGCGAGTAAGGATGGGAAGAGCGTCAAGGAGGCA
AAGGAGAAGAAGAAGAAGGTGCGGGCCAAGGCCGAGGCGGACGCGGGGGA
GGAGGACGGAGATGAAGACGGGGAGGCTGGAGGGGGAAAAGAGAAGGAGA
AGAAAAAGAAGAAGAAAAAGGATAAGGACGACAGGGAGAAGAAGAAGAAG
AAGAAGGAGAAAAAGGAGAAAAGCTCTGAGGCGGGTAGCAGTGACGGGGA
CGGGAACGGCAACGGCCTGGTCAATGGCAGCAGCAGTAGCAAGAAATCCG
GCGGTGGCTCCTCCTCGGACGAAGATGAAGACGAGGAAGGAGAAGACGGA
GAGTTGGTGGCTACGATGGATAATCTGGCCGTTGAGGACGCGACCGCTTT
CGCGGCTGCTGTTGGGAGGTTGGAGCAGTTCTTGAGTGCCCACCCGGAAG
CGACGGCGGCGCAGGTGTTGGATGAGGTGAGGATGATTGCGACTTTTTCG
GCATTGCCCATTGAAGATCGGTTATTCTTGTTTGTCCAGGCAGCATTTGG
GCCGGATGCGGCGAAGCAAAACATGGTGGGGAAGCATGTGAAGGTCTTGA
AGGGATTAATTTTGAATGTCGACGCCGAGGCGTACCAGCGGCGGTTGATT
GGAGTGATAGAGCATCTATGTGCCGTCACGCACAAGGAGACGCTGCTGAA
GATGTTTCCTCTGTTGCTGAAGCAGCTGTATGATGAGGAGGTGGTGGACG
AAGAGGTGTTTTTGGAGTGGGCGGAGGAGGAGGGCCCTACTGAGTTCACA
CGACGAGAGGTGAGTGAGGAAATGGTGGAGATGTTGAGGGGGGAAGCGGA
GAAATTTGTGACGTGGTTGAAGGAGGCGGAGGAGAGTGGGTCAGAGGAGG
ATGAGGAGAGCGAGGAGGAGGAGGAGGACAGCGAGGACTAAAAGAGGATT
TGTTGTTGGTTTCTGTTTGGTTGGAAATGTGGTTGACATTTTAGCAAAGG
GAAGTTGTTTTTTAAGATGGACCATGGGGCGAATTATGTTATTGCACGTT
GGCTCGGAGTCAAAGAAGGTACATACGCGAAGAAAAATGAACGAATATGA
CGCGAGAAGAGGAGGAGGAGAAGAAGAAGATCAAGGACAAGGACAAGGAA
AAGAAGGCAAATGAGAAGGAGAAAGAGTAAAGAAATAATAAGAGAACAGC
AGCATTCAGTAGTGGTCGATCATGGTGTCTTGTGTGTGTATGAAACAAAT
TATTGATGTCCATCGATACCACGCCAGGGGGGTGAAAACTCTTCCGATAG
CGCTGGCAAGTGCAGGCGAAGAGGAAATAAAGTGACAGCTTACCGTTTTT
TTGTACGTGTTTTGTGTGTGAGAGAGAGAGGGAGCATGCGCAAGGATAAA
AGCAATTATACAACAGCACAAATAGCACGTGTGTGTGATGGCAAGAAAGA
GCGGTACAGGTTGAAAAGAAGAGAAGACATACGAGACTTAAGCGAAAAGA
AGGGGATGAACAGTTTTCAATCTTTTTCATGGTCCACCTCCAGTACAACG
ACCACCACTATCATCACCAGCTCCACCAGCAACGAAGCCAAACAAATGAA
ATTTGACAAGATATAGGGAAAAGGTTGCGCATTGGGCAGGTTGAAGGGTG
TG

protein sequence of jgi.p|Nanoce1779_2|625250

>mRNA_3200-protein ID=mRNA_3200-protein|Name=jgi.p|Nanoce1779_2|625250|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MPACIWWSAGLNPIEDANYRYKMPRILAKVEGRGNGIKTVVINMKDVASA
LHRMPAEVTKFFGTELGAQTTYREETERAVVNGAHSAPALQALLCRYIQG
FVLCPSCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKK
ASKDGKSVKEAKEKKKKVRAKAEADAGEEDGDEDGEAGGGKEKEKKKKKK
KDKDDREKKKKKKEKKEKSSEAGSSDGDGNGNGLVNGSSSSKKSGGGSSS
DEDEDEEGEDGELVATMDNLAVEDATAFAAAVGRLEQFLSAHPEATAAQV
LDEVRMIATFSALPIEDRLFLFVQAAFGPDAAKQNMVGKHVKVLKGLILN
VDAEAYQRRLIGVIEHLCAVTHKETLLKMFPLLLKQLYDEEVVDEEVFLE
WAEEEGPTEFTRREVSEEMVEMLRGEAEKFVTWLKEAEESGSEEDEESEE
EEEDSED*

mRNA from alignment at scaffold_7:901455..904349+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3200 ID=mRNA_3200|Name=jgi.p|Nanoce1779_2|625250|organism=Nannochloropsis oceanica|type=mRNA|length=2895bp|location=Sequence derived from alignment at scaffold_7:901455..904349+ (Nannochloropsis oceanica)
GGGGATGCTCTCTCGCTGTTGGTTCACTCGATATCTCCATCCCACGACGC
AACAACCTCGGCAAGTGTATATGATACATAATCCTCACATTTGTCGAAAA
ACGGGATGTAGTGGGTCCTCCAGAAGCTTTCGATAAAGCAATGATCATCT
TTCAGGCTCGCGACGCCATTCATCATCACCATTATTAATGGTTGTATTGT
ATAGATCTAAACCCTTGGGGCTTAAACAACCACCCGAAGGAACTTGCACA
TCCCATCCTCCACGTGCACTGCCGCCACGGCGCCAGGCATATCACGGGCA
CCCGCAGCAAAACAACCATGCCCGCATGTATTTGGTGGAGCGGTGTCGCG
TCCAAGGCAGCGCTGGAGCAAACAAGTCTCTGCTTTTTTTTCAAGGGAGT
TCTCCCACAAATTTCACTTGCGCCCTCTCATCTTCCTCCCTTCCTCCCGA
CACACTACGCCAAAGATCACAGTGTTCCGACACGTACCCAGCCCGCAACC
CACTCAAAGGTCTGCCACCTTGTGCATGCAGTCGGAGGCCCTCTACGCTC
GCAGACCAAGAAGAGAAGACGGAGTACCCGCACGCTCCCCACCCCACAGT
CATAATCATTCGCATCAACTACGTCTCCTCCGTCTTGCCCCGTCGTCGCT
TCGCCCACTCCCTACTGAACCGATAATAGGGGGAAGCACCAGCAGCATCA
GCAGAACTAGCAGCAATCGGTGTGTGGAAAGCAACAGGAGAAATAGTAGC
AGCAGCGTGTAAGAAAACATCACGCATTAACAGATAGACAAAAACGAGCA
TCATTACCGACCTTCTTAAATAATGATGAACATAGCGGGGCTCAACCCCA
TCGAAGACGCCAACTATCGGTACAAAATGCCCCGCATCTTGGCTAAAGTG
GAGGGGCGTGGAAACGGGATAAAAACCGTCGTTATCAACATGAAAGACGT
CGCCTCTGCCCTCCACCGCATGCCCGCAGAAGTCACCAAATTCTTTGGCA
CGGAACTTGGCGCCCAGACCACCTACAGGGAAGAAACGGAGCGAGCGGTG
GTGAACGGCGCGCATTCTGCGCCTGCGCTGCAGGCGCTTTTGTGCCGGTA
CATCCAGGGGTTTGTCCTTTGTCCCTCTTGTGGGTTGCCTGAGACGGCCT
ACAAGATCAAAGGGGGGGTGATTTATCAGAAATGTGACGCGTGTGGGGAG
AAGAGTATGTGTGATATGAGTCATAAATTGACGACATTCATCATTAACAC
GCATAAGAAGGCGAGTAAGGATGGGAAGAGCGTCAAGGAGGCAAAGGAGA
AGAAGAAGAAGGTGCGGGCCAAGGCCGAGGCGGACGCGGGGGAGGAGGAC
GGAGATGAAGACGGGGAGGCTGGAGGGGGAAAAGAGAAGGAGAAGAAAAA
GAAGAAGAAAAAGGATAAGGACGACAGGGAGAAGAAGAAGAAGAAGAAGG
AGAAAAAGGAGAAAAGCTCTGAGGCGGGTAGCAGTGACGGGGACGGGAAC
GGCAACGGCCTGGTCAATGGCAGCAGCAGTAGCAAGAAATCCGGCGGTGG
CTCCTCCTCGGACGAAGATGAAGACGAGGAAGGAGAAGACGGAGAGTTGG
TGGCTACGATGGATAATCTGGCCGTTGAGGACGCGACCGCTTTCGCGGCT
GCTGTTGGGAGGTTGGAGCAGTTCTTGAGTGCCCACCCGGAAGCGACGGC
GGCGCAGGTGTTGGATGAGGTGAGGATGATTGCGACTTTTTCGGCATTGC
CCATTGAAGATCGGTTATTCTTGTTTGTCCAGGCAGCATTTGGGCCGGAT
GCGGCGAAGCAAAACATGGTGGGGAAGCATGTGAAGGTCTTGAAGGGATT
AATTTTGAATGTCGACGCCGAGGCGTACCAGCGGCGGTTGATTGGAGTGA
TAGAGCATCTATGTGCCGTCACGCACAAGGAGACGCTGCTGAAGATGTTT
CCTCTGTTGCTGAAGCAGCTGTATGATGAGGAGGTGGTGGACGAAGAGGT
GTTTTTGGAGTGGGCGGAGGAGGAGGGCCCTACTGAGTTCACACGACGAG
AGGTGAGTGAGGAAATGGTGGAGATGTTGAGGGGGGAAGCGGAGAAATTT
GTGACGTGGTTGAAGGAGGCGGAGGAGAGTGGGTCAGAGGAGGATGAGGA
GAGCGAGGAGGAGGAGGAGGACAGCGAGGACTAAAAGAGGATTTGTTGTT
GGTTTCTGTTTGGTTGGAAATGTGGTTGACATTTTAGCAAAGGGAAGTTG
TTTTTTAAGATGGACCATGGGGCGAATTATGTTATTGCACGTTGGCTCGG
AGTCAAAGAAGGTACATACGCGAAGAAAAATGAACGAATATGACGCGAGA
AGAGGAGGAGGAGAAGAAGAAGATCAAGGACAAGGACAAGGAAAAGAAGG
CAAATGAGAAGGAGAAAGAGTAAAGAAATAATAAGAGAACAGCAGCATTC
AGTAGTGGTCGATCATGGTGTCTTGTGTGTGTATGAAACAAATTATTGAT
GTCCATCGATACCACGCCAGGGGGGTGAAAACTCTTCCGATAGCGCTGGC
AAGTGCAGGCGAAGAGGAAATAAAGTGACAGCTTACCGTTTTTTTGTACG
TGTTTTGTGTGTGAGAGAGAGAGGGAGCATGCGCAAGGATAAAAGCAATT
ATACAACAGCACAAATAGCACGTGTGTGTGATGGCAAGAAAGAGCGGTAC
AGGTTGAAAAGAAGAGAAGACATACGAGACTTAAGCGAAAAGAAGGGGAT
GAACAGTTTTCAATCTTTTTCATGGTCCACCTCCAGTACAACGACCACCA
CTATCATCACCAGCTCCACCAGCAACGAAGCCAAACAAATGAAATTTGAC
AAGATATAGGGAAAAGGTTGCGCATTGGGCAGGTTGAAGGGTGTG

Coding sequence (CDS) from alignment at scaffold_7:901455..904349+

>mRNA_3200 ID=mRNA_3200|Name=jgi.p|Nanoce1779_2|625250|organism=Nannochloropsis oceanica|type=CDS|length=2748bp|location=Sequence derived from alignment at scaffold_7:901455..904349+ (Nannochloropsis oceanica)
ATGCCCGCATGTATTTGGTGGAGCGCGGGGCTCAACCCCATCGAAGACGC
CAACTATCGGTACAAAATGCCCCGCATCTTGGCTAAAGTGGAGGGGCGTG
GAAACGGGATAAAAACCGTCGTTATCAACATGAAAGACGTCGCCTCTGCC
CTCCACCGCATGCCCGCAGAAGTCACCAAATTCTTTGGCACGGAACTTGG
CGCCCAGACCACCTACAGGGAAGAAACGGAGCGAGCGGTGGTGAACGGCG
CGCATTCTGCGCCTGCGCTGCAGGCGCTTTTGTGCCGGTACATCCAGGGG
TTTGTCCTTTGTCCCTCTTGTGGGTTGCCTGAGACGGCCTACAAGATCAA
AGGGGGGGTGATTTATCAGAAATGTGACGCGTGTGGGGAGAAGAGTATGT
GTGATATGAGTCATAAATTGACGACATTCATCATTAACACGCATAAGAAG
GCGAGTAAGGATGGGAAGAGCGTCAAGGAGGCAAAGGAGAAGAAGAAGAA
GGTGCGGGCCAAGGCCGAGGCGGACGCGGGGGAGGAGGACGGAGATGAAG
ACGGGGAGGCTGGAGGGGGAAAAGAGAAGGAGAAGAAAAAGAAGAAGAAA
AAGGATAAGGACGACAGGGAGAAGAAGAAGAAGAAGAAGGAGAAAAAGGA
GAAAAGCTCTGAGGCGGGTAGCAGTGACGGGGACGGGAACGGCAACGGCC
TGGTCAATGGCAGCAGCAGTAGCAAGAAATCCGGCGGTGGCTCCTCCTCG
GACGAAGATGAAGACGAGGAAGGAGAAGACGGAGAGTTGGTGGCTACGAT
GGATAATCTGGCCGTTGAGGACGCGACCGCTTTCGCGGCTGCTGTTGGGA
GGTTGGAGCAGTTCTTGAGTGCCCACCCGGAAGCGACGGCGGCGCAGGTG
TTGGATGAGGTGAGGATGATTGCGACTTTTTCGGCATTGCCCATTGAAGA
TCGGTTATTCTTGTTTGTCCAGGCAGCATTTGGGCCGGATGCGGCGAAGC
AAAACATGGTGGGGAAGCATGTGAAGGTCTTGAAGGGATTAATTTTGAAT
GTCGACGCCGAGGCGTACCAGCGGCGGTTGATTGGAGTGATAGAGCATCT
ATGTGCCGTCACGCACAAGGAGACGCTGCTGAAGATGTTTCCTCTGTTGC
TGAAGCAGCTGTATGATGAGGAGGTGGTGGACGAAGAGGTGTTTTTGGAG
TGGGCGGAGGAGGAGGGCCCTACTGAGTTCACACGACGAGAGGTGAGTGA
GGAAATGGTGGAGATGTTGAGGGGGGAAGCGGAGAAATTTGTGACGTGGT
TGAAGGAGGCGGAGGAGAGTGGGTCAGAGGAGGATGAGGAGAGCGAGGAG
GAGGAGGAGGACAGCGAGGACTAAATGCCCGCATGTATTTGGTGGAGCGC
GGGGCTCAACCCCATCGAAGACGCCAACTATCGGTACAAAATGCCCCGCA
TCTTGGCTAAAGTGGAGGGGCGTGGAAACGGGATAAAAACCGTCGTTATC
AACATGAAAGACGTCGCCTCTGCCCTCCACCGCATGCCCGCAGAAGTCAC
CAAATTCTTTGGCACGGAACTTGGCGCCCAGACCACCTACAGGGAAGAAA
CGGAGCGAGCGGTGGTGAACGGCGCGCATTCTGCGCCTGCGCTGCAGGCG
CTTTTGTGCCGGTACATCCAGGGGTTTGTCCTTTGTCCCTCTTGTGGGTT
GCCTGAGACGGCCTACAAGATCAAAGGGGGGGTGATTTATCAGAAATGTG
ACGCGTGTGGGGAGAAGAGTATGTGTGATATGAGTCATAAATTGACGACA
TTCATCATTAACACGCATAAGAAGGCGAGTAAGGATGGGAAGAGCGTCAA
GGAGGCAAAGGAGAAGAAGAAGAAGGTGCGGGCCAAGGCCGAGGCGGACG
CGGGGGAGGAGGACGGAGATGAAGACGGGGAGGCTGGAGGGGGAAAAGAG
AAGGAGAAGAAAAAGAAGAAGAAAAAGGATAAGGACGACAGGGAGAAGAA
GAAGAAGAAGAAGGAGAAAAAGGAGAAAAGCTCTGAGGCGGGTAGCAGTG
ACGGGGACGGGAACGGCAACGGCCTGGTCAATGGCAGCAGCAGTAGCAAG
AAATCCGGCGGTGGCTCCTCCTCGGACGAAGATGAAGACGAGGAAGGAGA
AGACGGAGAGTTGGTGGCTACGATGGATAATCTGGCCGTTGAGGACGCGA
CCGCTTTCGCGGCTGCTGTTGGGAGGTTGGAGCAGTTCTTGAGTGCCCAC
CCGGAAGCGACGGCGGCGCAGGTGTTGGATGAGGTGAGGATGATTGCGAC
TTTTTCGGCATTGCCCATTGAAGATCGGTTATTCTTGTTTGTCCAGGCAG
CATTTGGGCCGGATGCGGCGAAGCAAAACATGGTGGGGAAGCATGTGAAG
GTCTTGAAGGGATTAATTTTGAATGTCGACGCCGAGGCGTACCAGCGGCG
GTTGATTGGAGTGATAGAGCATCTATGTGCCGTCACGCACAAGGAGACGC
TGCTGAAGATGTTTCCTCTGTTGCTGAAGCAGCTGTATGATGAGGAGGTG
GTGGACGAAGAGGTGTTTTTGGAGTGGGCGGAGGAGGAGGGCCCTACTGA
GTTCACACGACGAGAGGTGAGTGAGGAAATGGTGGAGATGTTGAGGGGGG
AAGCGGAGAAATTTGTGACGTGGTTGAAGGAGGCGGAGGAGAGTGGGTCA
GAGGAGGATGAGGAGAGCGAGGAGGAGGAGGAGGACAGCGAGGACTAA

Synonyms

Publications