jgi.p|Nanoce1779_2|575974, mRNA_32 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575974
Unique NamemRNA_32
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length885
Alignment locationscaffold_3:97457..98341 +

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Properties
Property NameValue
TranscriptId576060
TrackFilteredModels2
ProteinId575974
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:97457..98341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575974gene_32Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575974mRNA_32-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_32CDS_32Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_32 ID=mRNA_32|Name=jgi.p|Nanoce1779_2|575974|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGAGGAGG
AGGAAGAGGAGGAGGCAGTACCAGTGACTGATCGAGCGCATTCTGTGATG
ATGGGAGAAGGTGAGCGAGGCTGTTCTCCTTCTCCCGCGACCGATCAACC
TTCCTCCCGCGAGTCCTCCTCCTCCGTCGATTCCTCTATTCCCGTCCGGC
TCATGAAGGCTCTGAGTGGGGAGGAAATCGATTTGAGCGTGTCGGCTCAG
TTGAAAGAAGGAGGAAGGGGGGGAGGAAACGCCTCCTCCTCCCCCCTCCT
CACGCGCGGCCTTGTGGAGGAGACCTCAGGCCCCGTCCCGTCTATTTATT
CGTTCATCTCGCACAACACCCCCTCCCACCTCCTCACCCTGCCCCACGGC
CGCACCCGGGCCCACCGCCGCTACTCCTCCCTGTCCTCCTCCCCTGTTGA
GGGTGCTTTCTCCTCCCTCCCTCTCTCTTTTCAGTCCCTGCTCTTGTCGA
GCGGGAAGGGCGGGAGGAAGGAAGGGGAGGAAGCAGCAGCAGCTGCAGCA
GCAGCAGGCCGGCGGTACGATTATCTGGTGGGAGCTTTGGATTTAGCCAC
AGCCTTGGGAGTAGGGAGGAAGGGAAGTAGGATGATCATGGGGAAATCCG
GCCATGAAGGAGCGGTGTCGTGGGTGCATTTACGGGAGGACGAGATAATG
GAGTTGAGTCAGTCGCAGGCCTAGGGGAGGGAGGGGTGGAGGGAGGGATC
GGTGTCGGTGGCACCGGTCTTGCCGAGTGAGTGTTAACCAGGGAGGGAAG
GAGGGAGGGAGTGAGTGGTAAAAAGAAGGGCAAGAAGAGGGAGTTCAAAG
AGTAAGGGAGTGCACTAGGAGAGCATTTTGCGAAG
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protein sequence of jgi.p|Nanoce1779_2|575974

>mRNA_32-protein ID=mRNA_32-protein|Name=jgi.p|Nanoce1779_2|575974|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MMGEGERGCSPSPATDQPSSRESSSSVDSSIPVRLMKALSGEEIDLSVSA
QLKEGGRGGGNASSSPLLTRGLVEETSGPVPSIYSFISHNTPSHLLTLPH
GRTRAHRRYSSLSSSPVEGAFSSLPLSFQSLLLSSGKGGRKEGEEAAAAA
AAAGRRYDYLVGALDLATALGVGRKGSRMIMGKSGHEGAVSWVHLREDEI
MELSQSQA*
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mRNA from alignment at scaffold_3:97457..98341+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_32 ID=mRNA_32|Name=jgi.p|Nanoce1779_2|575974|organism=Nannochloropsis oceanica|type=mRNA|length=885bp|location=Sequence derived from alignment at scaffold_3:97457..98341+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGAGGAGG
AGGAAGAGGAGGAGGCAGTACCAGTGACTGATCGAGCGCATTCTGTGATG
ATGGGAGAAGGTGAGCGAGGCTGTTCTCCTTCTCCCGCGACCGATCAACC
TTCCTCCCGCGAGTCCTCCTCCTCCGTCGATTCCTCTATTCCCGTCCGGC
TCATGAAGGCTCTGAGTGGGGAGGAAATCGATTTGAGCGTGTCGGCTCAG
TTGAAAGAAGGAGGAAGGGGGGGAGGAAACGCCTCCTCCTCCCCCCTCCT
CACGCGCGGCCTTGTGGAGGAGACCTCAGGCCCCGTCCCGTCTATTTATT
CGTTCATCTCGCACAACACCCCCTCCCACCTCCTCACCCTGCCCCACGGC
CGCACCCGGGCCCACCGCCGCTACTCCTCCCTGTCCTCCTCCCCTGTTGA
GGGTGCTTTCTCCTCCCTCCCTCTCTCTTTTCAGTCCCTGCTCTTGTCGA
GCGGGAAGGGCGGGAGGAAGGAAGGGGAGGAAGCAGCAGCAGCTGCAGCA
GCAGCAGGCCGGCGGTACGATTATCTGGTGGGAGCTTTGGATTTAGCCAC
AGCCTTGGGAGTAGGGAGGAAGGGAAGTAGGATGATCATGGGGAAATCCG
GCCATGAAGGAGCGGTGTCGTGGGTGCATTTACGGGAGGACGAGATAATG
GAGTTGAGTCAGTCGCAGGCCTAGGGGAGGGAGGGGTGGAGGGAGGGATC
GGTGTCGGTGGCACCGGTCTTGCCGAGTGAGTGTTAACCAGGGAGGGAAG
GAGGGAGGGAGTGAGTGGTAAAAAGAAGGGCAAGAAGAGGGAGTTCAAAG
AGTAAGGGAGTGCACTAGGAGAGCATTTTGCGAAG
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Coding sequence (CDS) from alignment at scaffold_3:97457..98341+

>mRNA_32 ID=mRNA_32|Name=jgi.p|Nanoce1779_2|575974|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_3:97457..98341+ (Nannochloropsis oceanica)
ATGATGGGAGAAGGTGAGCGAGGCTGTTCTCCTTCTCCCGCGACCGATCA
ACCTTCCTCCCGCGAGTCCTCCTCCTCCGTCGATTCCTCTATTCCCGTCC
GGCTCATGAAGGCTCTGAGTGGGGAGGAAATCGATTTGAGCGTGTCGGCT
CAGTTGAAAGAAGGAGGAAGGGGGGGAGGAAACGCCTCCTCCTCCCCCCT
CCTCACGCGCGGCCTTGTGGAGGAGACCTCAGGCCCCGTCCCGTCTATTT
ATTCGTTCATCTCGCACAACACCCCCTCCCACCTCCTCACCCTGCCCCAC
GGCCGCACCCGGGCCCACCGCCGCTACTCCTCCCTGTCCTCCTCCCCTGT
TGAGGGTGCTTTCTCCTCCCTCCCTCTCTCTTTTCAGTCCCTGCTCTTGT
CGAGCGGGAAGGGCGGGAGGAAGGAAGGGGAGGAAGCAGCAGCAGCTGCA
GCAGCAGCAGGCCGGCGGTACGATTATCTGGTGGGAGCTTTGGATTTAGC
CACAGCCTTGGGAGTAGGGAGGAAGGGAAGTAGGATGATCATGGGGAAAT
CCGGCCATGAAGGAGCGGTGTCGTGGGTGCATTTACGGGAGGACGAGATA
ATGGAGTTGAGTCAGTCGCAGGCCTAG
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Synonyms
Publications