jgi.p|Nanoce1779_2|664616, mRNA_3198 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|664616
Unique NamemRNA_3198
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1821
Alignment locationscaffold_7:894030..895850 -

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Properties
Property NameValue
TranscriptId664702
TrackFilteredModels2
ProteinId664616
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:894030..895850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664616gene_3198Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3198CDS_3198Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664616mRNA_3198-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3198 ID=mRNA_3198|Name=jgi.p|Nanoce1779_2|664616|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
GAGTATGCCGTTGATGACTCTTGCCTTTTCCTTCACCAAATCAATCACGT
ACCCTTTACACACCAAAAAAAAAATGGGTATACATAAACTATGTCGCACA
CATTGTTTCCTCAATCCTTCCATCCCTTGCTCCTGCTTCCAAACGCATGC
CCGCTGCTCAAGCGCACTCGTCCTTGCCTCTCAACATACATCACAGGCAT
GACAAAGGGGCCATTGACCAACAAGGACAAGCCGAGTGCCAACACGACCA
GGACGGATGCATCCGTCCCAGTATATGCAGCCGCGGAACGTCGCAGGACA
ACAGGCAGCATGCGACACGTTTCCCAAAGCCCTCCAGTTGACAGAACCGT
GTTTCATCAAGGCGTCTTGTTGATGTTGGCGGGTACCGCGGTCGCATACA
CAGCAATTCGTATGGTATGGGCTTTAATTCGCTTGCTTCCTTTCATTGCG
GTCGGCATGTACTGTATGAAACCAAGCCTCGAGAGCTTCATGGAGTCCTT
GTCGCTCAGGGACAAACGAAGTAGCAACAGCGGCACCAGCATGTCTGCTC
CCGCTCCTTCGTCTGCCACAAGCAACAGCAAGCCGGGCGGTTGGCTGAAG
AAAGTGGTCAGCAAGACGATCGAGAAAACATCTTCTGCCTGGACGCTAAA
CCCTGTGCGTGAATGGTTGTACCTCGATTTAGGTCTCTTCATGCTATGCA
AAAAGAAACCCTCAGCTTTTCAAGGACTATCAGCGGTCTTGGGCGGGGGT
ACGGCGTCACTAGAGCCCAAGGCCTTTGCGATAGGCGTATGTTCCCAATG
GGCTTTACTGGATCCATCCACGTTTGGCTCGCCTGGAGAGGGTTCGTGGT
TGAAGATCTATGCGTACGAATTAGCATGCTTGCTCTCGTCGCAATGGCCT
GATGACAAATGGAACACATTTTCGTCTTTGCCCGCCGTGCAAAGACGAAA
TGACACCCAGCTTTCCGCAGCTGTCGATGCAGTGGTAGCCGCGACTGCAA
ATGTGGTTGGAGAGGCGTGGAAAGAGGTGGTGGAAGCCAGCAGTAACCAG
TGCAACAGCAACATCAGCAGCATCAGCAGCAGGGACAGGCATACCAGCGT
TGTCAAAACCAACAGCCCTTCAACCGATGTAAGCTGCAAAGGCGCGGTGG
CGGGGATGATGGAGGGGATGGGAAACAAGCCCATGATGTATTATATGCAC
CTCGCACAAGAAATGGCGGAACGTGGTCGATTCGAAGAGGCAGGGAGGGC
CGTTGAGGCCGGGTTGGAGAAAACGAGGAGGGTCCTAAAGGGGGGGGTAG
AGGAGGAAACTGAATTCTTGCTGGTAGCTTGTTCGTTCTACGAGGCAGGC
ATTCCGTCATCATATCAATGTGCAACGAGAAGACTCAGGGTATTGGAGCA
GGCGGCAGGATTGTGTGTTGTGAACGAAAGGTGGGCGAAGGCCTCCGCAC
TGTTTGAGGAGTGTTTGGTAGCATGTATAGAAGATGAAAGAAACAGAGGG
CATTCATTGGTAGTGATGGAGCGAACGGTATTATCTTGCGTGCTGGCTCA
ATTGATGGTCGGCGATTTTGTGAAAGCGGAGGCCTTACACAATCAAGTAT
GTGGAAAGGATGCCCGATATCAGAAGACGAGGGAGGCGGAGCTGGTAACG
AATATTCTTAGGGGAATCCACACGCATAACCCTAAGGTGATAGAGGAGGC
TGCGTTGAGGTATCAGCAGTCGAGGGAGGGAGGGAGGGAGGAAGGGAAGA
ATTTGAACGATTGGCAAGAGAGGGTGTTGAGGCATGTGATGAAGAGGGCG
GATGCGGCGGTGTTGTTGTGA
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protein sequence of jgi.p|Nanoce1779_2|664616

>mRNA_3198-protein ID=mRNA_3198-protein|Name=jgi.p|Nanoce1779_2|664616|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp
MSHTLFPQSFHPLLLLPNACPLLKRTRPCLSTYITGMTKGPLTNKDKPSA
NTTRTDASVPVYAAAERRRTTGSMRHVSQSPPVDRTVFHQGVLLMLAGTA
VAYTAIRMVWALIRLLPFIAVGMYCMKPSLESFMESLSLRDKRSSNSGTS
MSAPAPSSATSNSKPGGWLKKVVSKTIEKTSSAWTLNPVREWLYLDLGLF
MLCKKKPSAFQGLSAVLGGGTASLEPKAFAIGVCSQWALLDPSTFGSPGE
GSWLKIYAYELACLLSSQWPDDKWNTFSSLPAVQRRNDTQLSAAVDAVVA
ATANVVGEAWKEVVEASSNQCNSNISSISSRDRHTSVVKTNSPSTDVSCK
GAVAGMMEGMGNKPMMYYMHLAQEMAERGRFEEAGRAVEAGLEKTRRVLK
GGVEEETEFLLVACSFYEAGIPSSYQCATRRLRVLEQAAGLCVVNERWAK
ASALFEECLVACIEDERNRGHSLVVMERTVLSCVLAQLMVGDFVKAEALH
NQVCGKDARYQKTREAELVTNILRGIHTHNPKVIEEAALRYQQSREGGRE
EGKNLNDWQERVLRHVMKRADAAVLL*
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mRNA from alignment at scaffold_7:894030..895850-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3198 ID=mRNA_3198|Name=jgi.p|Nanoce1779_2|664616|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp|location=Sequence derived from alignment at scaffold_7:894030..895850- (Nannochloropsis oceanica)
GAGTATGCCGTTGATGACTCTTGCCTTTTCCTTCACCAAATCAATCACGT
ACCCTTTACACACCAAAAAAAAAATGGGTATACATAAACTATGTCGCACA
CATTGTTTCCTCAATCCTTCCATCCCTTGCTCCTGCTTCCAAACGCATGC
CCGCTGCTCAAGCGCACTCGTCCTTGCCTCTCAACATACATCACAGGCAT
GACAAAGGGGCCATTGACCAACAAGGACAAGCCGAGTGCCAACACGACCA
GGACGGATGCATCCGTCCCAGTATATGCAGCCGCGGAACGTCGCAGGACA
ACAGGCAGCATGCGACACGTTTCCCAAAGCCCTCCAGTTGACAGAACCGT
GTTTCATCAAGGCGTCTTGTTGATGTTGGCGGGTACCGCGGTCGCATACA
CAGCAATTCGTATGGTATGGGCTTTAATTCGCTTGCTTCCTTTCATTGCG
GTCGGCATGTACTGTATGAAACCAAGCCTCGAGAGCTTCATGGAGTCCTT
GTCGCTCAGGGACAAACGAAGTAGCAACAGCGGCACCAGCATGTCTGCTC
CCGCTCCTTCGTCTGCCACAAGCAACAGCAAGCCGGGCGGTTGGCTGAAG
AAAGTGGTCAGCAAGACGATCGAGAAAACATCTTCTGCCTGGACGCTAAA
CCCTGTGCGTGAATGGTTGTACCTCGATTTAGGTCTCTTCATGCTATGCA
AAAAGAAACCCTCAGCTTTTCAAGGACTATCAGCGGTCTTGGGCGGGGGT
ACGGCGTCACTAGAGCCCAAGGCCTTTGCGATAGGCGTATGTTCCCAATG
GGCTTTACTGGATCCATCCACGTTTGGCTCGCCTGGAGAGGGTTCGTGGT
TGAAGATCTATGCGTACGAATTAGCATGCTTGCTCTCGTCGCAATGGCCT
GATGACAAATGGAACACATTTTCGTCTTTGCCCGCCGTGCAAAGACGAAA
TGACACCCAGCTTTCCGCAGCTGTCGATGCAGTGGTAGCCGCGACTGCAA
ATGTGGTTGGAGAGGCGTGGAAAGAGGTGGTGGAAGCCAGCAGTAACCAG
TGCAACAGCAACATCAGCAGCATCAGCAGCAGGGACAGGCATACCAGCGT
TGTCAAAACCAACAGCCCTTCAACCGATGTAAGCTGCAAAGGCGCGGTGG
CGGGGATGATGGAGGGGATGGGAAACAAGCCCATGATGTATTATATGCAC
CTCGCACAAGAAATGGCGGAACGTGGTCGATTCGAAGAGGCAGGGAGGGC
CGTTGAGGCCGGGTTGGAGAAAACGAGGAGGGTCCTAAAGGGGGGGGTAG
AGGAGGAAACTGAATTCTTGCTGGTAGCTTGTTCGTTCTACGAGGCAGGC
ATTCCGTCATCATATCAATGTGCAACGAGAAGACTCAGGGTATTGGAGCA
GGCGGCAGGATTGTGTGTTGTGAACGAAAGGTGGGCGAAGGCCTCCGCAC
TGTTTGAGGAGTGTTTGGTAGCATGTATAGAAGATGAAAGAAACAGAGGG
CATTCATTGGTAGTGATGGAGCGAACGGTATTATCTTGCGTGCTGGCTCA
ATTGATGGTCGGCGATTTTGTGAAAGCGGAGGCCTTACACAATCAAGTAT
GTGGAAAGGATGCCCGATATCAGAAGACGAGGGAGGCGGAGCTGGTAACG
AATATTCTTAGGGGAATCCACACGCATAACCCTAAGGTGATAGAGGAGGC
TGCGTTGAGGTATCAGCAGTCGAGGGAGGGAGGGAGGGAGGAAGGGAAGA
ATTTGAACGATTGGCAAGAGAGGGTGTTGAGGCATGTGATGAAGAGGGCG
GATGCGGCGGTGTTGTTGTGA
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Coding sequence (CDS) from alignment at scaffold_7:894030..895850-

>mRNA_3198 ID=mRNA_3198|Name=jgi.p|Nanoce1779_2|664616|organism=Nannochloropsis oceanica|type=CDS|length=1731bp|location=Sequence derived from alignment at scaffold_7:894030..895850- (Nannochloropsis oceanica)
ATGTCGCACACATTGTTTCCTCAATCCTTCCATCCCTTGCTCCTGCTTCC
AAACGCATGCCCGCTGCTCAAGCGCACTCGTCCTTGCCTCTCAACATACA
TCACAGGCATGACAAAGGGGCCATTGACCAACAAGGACAAGCCGAGTGCC
AACACGACCAGGACGGATGCATCCGTCCCAGTATATGCAGCCGCGGAACG
TCGCAGGACAACAGGCAGCATGCGACACGTTTCCCAAAGCCCTCCAGTTG
ACAGAACCGTGTTTCATCAAGGCGTCTTGTTGATGTTGGCGGGTACCGCG
GTCGCATACACAGCAATTCGTATGGTATGGGCTTTAATTCGCTTGCTTCC
TTTCATTGCGGTCGGCATGTACTGTATGAAACCAAGCCTCGAGAGCTTCA
TGGAGTCCTTGTCGCTCAGGGACAAACGAAGTAGCAACAGCGGCACCAGC
ATGTCTGCTCCCGCTCCTTCGTCTGCCACAAGCAACAGCAAGCCGGGCGG
TTGGCTGAAGAAAGTGGTCAGCAAGACGATCGAGAAAACATCTTCTGCCT
GGACGCTAAACCCTGTGCGTGAATGGTTGTACCTCGATTTAGGTCTCTTC
ATGCTATGCAAAAAGAAACCCTCAGCTTTTCAAGGACTATCAGCGGTCTT
GGGCGGGGGTACGGCGTCACTAGAGCCCAAGGCCTTTGCGATAGGCGTAT
GTTCCCAATGGGCTTTACTGGATCCATCCACGTTTGGCTCGCCTGGAGAG
GGTTCGTGGTTGAAGATCTATGCGTACGAATTAGCATGCTTGCTCTCGTC
GCAATGGCCTGATGACAAATGGAACACATTTTCGTCTTTGCCCGCCGTGC
AAAGACGAAATGACACCCAGCTTTCCGCAGCTGTCGATGCAGTGGTAGCC
GCGACTGCAAATGTGGTTGGAGAGGCGTGGAAAGAGGTGGTGGAAGCCAG
CAGTAACCAGTGCAACAGCAACATCAGCAGCATCAGCAGCAGGGACAGGC
ATACCAGCGTTGTCAAAACCAACAGCCCTTCAACCGATGTAAGCTGCAAA
GGCGCGGTGGCGGGGATGATGGAGGGGATGGGAAACAAGCCCATGATGTA
TTATATGCACCTCGCACAAGAAATGGCGGAACGTGGTCGATTCGAAGAGG
CAGGGAGGGCCGTTGAGGCCGGGTTGGAGAAAACGAGGAGGGTCCTAAAG
GGGGGGGTAGAGGAGGAAACTGAATTCTTGCTGGTAGCTTGTTCGTTCTA
CGAGGCAGGCATTCCGTCATCATATCAATGTGCAACGAGAAGACTCAGGG
TATTGGAGCAGGCGGCAGGATTGTGTGTTGTGAACGAAAGGTGGGCGAAG
GCCTCCGCACTGTTTGAGGAGTGTTTGGTAGCATGTATAGAAGATGAAAG
AAACAGAGGGCATTCATTGGTAGTGATGGAGCGAACGGTATTATCTTGCG
TGCTGGCTCAATTGATGGTCGGCGATTTTGTGAAAGCGGAGGCCTTACAC
AATCAAGTATGTGGAAAGGATGCCCGATATCAGAAGACGAGGGAGGCGGA
GCTGGTAACGAATATTCTTAGGGGAATCCACACGCATAACCCTAAGGTGA
TAGAGGAGGCTGCGTTGAGGTATCAGCAGTCGAGGGAGGGAGGGAGGGAG
GAAGGGAAGAATTTGAACGATTGGCAAGAGAGGGTGTTGAGGCATGTGAT
GAAGAGGGCGGATGCGGCGGTGTTGTTGTGA
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Synonyms
Publications