jgi.p|Nanoce1779_2|629442, mRNA_3197 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629442
Unique NamemRNA_3197
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length725
Alignment locationscaffold_7:893057..893781 +

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Properties
Property NameValue
TranscriptId629528
TrackFilteredModels2
ProteinId629442
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:893057..893781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629442gene_3197Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629442mRNA_3197-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3197CDS_3197Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3197 ID=mRNA_3197|Name=jgi.p|Nanoce1779_2|629442|organism=Nannochloropsis oceanica|type=mRNA|length=725bp
TGCAGCAGTAGTGTGGCAAAAAGTCCCTTGCGATCGACCTCCCCACCCCC
ATCTCCGCTTCATTCACAGACTATTATCATTATCTCTCTCTACCTAAAAA
CGCCCTCTGTCCACTCACAGCAACTCACCCTAACGCCCCTATCATAAAAT
TAGCAAGCACAGCCCGCCGAAGCATGCTGTCGAGGTCGTGGGTCGGAAGC
AGTAAAAGCTTGCTGGCTAGAACTGTTTGCTCTCCCGCTTCTTGCGCCGT
CATTACCACTGGTGCTACTGCTCCGTTTGGCCTCGCGTGGGGCGGCGTGA
GCTGCCGCACGGCAACAAAGAAGGCAGGTGGTTCGTCCAAGAACGGTCGG
GACTCACCAGGGCAGCGCTTGGGCGTCAAGAAGTTTGGGGGGCAGACAGC
GCTGGCGGGCAACATCTTGGTGAGGCAACGAGGCCTTACGTTCAAGGCCG
GGGAGGGGGTGGGCGTGGGGAGGGACTACACATTATTCGCCTTGCGGCCG
GGATGGGTGAAGTTTTCGTACGACGTGCACCGCAAGAAGTCGTACGTGCA
TATAGCCGATTCGAGTCCGCATCCCCACGAGCAGCTAGCAGCAGCAGGAG
CAACAGGAGCTGCAGCGACTAAAGCGGCATCGTCGTGAGAGGTGAAGACG
ATAAGGACATACCTCTCACGACGATGCCGACAAAGCCAACAAAGTTATGT
GGGGCTACACTGCAGCGATGTGATC
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protein sequence of jgi.p|Nanoce1779_2|629442

>mRNA_3197-protein ID=mRNA_3197-protein|Name=jgi.p|Nanoce1779_2|629442|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MLSRSWVGSSKSLLARTVCSPASCAVITTGATAPFGLAWGGVSCRTATKK
AGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGR
DYTLFALRPGWVKFSYDVHRKKSYVHIADSSPHPHEQLAAAGATGAAATK
AASS*
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mRNA from alignment at scaffold_7:893057..893781+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3197 ID=mRNA_3197|Name=jgi.p|Nanoce1779_2|629442|organism=Nannochloropsis oceanica|type=mRNA|length=725bp|location=Sequence derived from alignment at scaffold_7:893057..893781+ (Nannochloropsis oceanica)
TGCAGCAGTAGTGTGGCAAAAAGTCCCTTGCGATCGACCTCCCCACCCCC
ATCTCCGCTTCATTCACAGACTATTATCATTATCTCTCTCTACCTAAAAA
CGCCCTCTGTCCACTCACAGCAACTCACCCTAACGCCCCTATCATAAAAT
TAGCAAGCACAGCCCGCCGAAGCATGCTGTCGAGGTCGTGGGTCGGAAGC
AGTAAAAGCTTGCTGGCTAGAACTGTTTGCTCTCCCGCTTCTTGCGCCGT
CATTACCACTGGTGCTACTGCTCCGTTTGGCCTCGCGTGGGGCGGCGTGA
GCTGCCGCACGGCAACAAAGAAGGCAGGTGGTTCGTCCAAGAACGGTCGG
GACTCACCAGGGCAGCGCTTGGGCGTCAAGAAGTTTGGGGGGCAGACAGC
GCTGGCGGGCAACATCTTGGTGAGGCAACGAGGCCTTACGTTCAAGGCCG
GGGAGGGGGTGGGCGTGGGGAGGGACTACACATTATTCGCCTTGCGGCCG
GGATGGGTGAAGTTTTCGTACGACGTGCACCGCAAGAAGTCGTACGTGCA
TATAGCCGATTCGAGTCCGCATCCCCACGAGCAGCTAGCAGCAGCAGGAG
CAACAGGAGCTGCAGCGACTAAAGCGGCATCGTCGTGAGAGGTGAAGACG
ATAAGGACATACCTCTCACGACGATGCCGACAAAGCCAACAAAGTTATGT
GGGGCTACACTGCAGCGATGTGATC
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Coding sequence (CDS) from alignment at scaffold_7:893057..893781+

>mRNA_3197 ID=mRNA_3197|Name=jgi.p|Nanoce1779_2|629442|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_7:893057..893781+ (Nannochloropsis oceanica)
ATGCTGTCGAGGTCGTGGGTCGGAAGCAGTAAAAGCTTGCTGGCTAGAAC
TGTTTGCTCTCCCGCTTCTTGCGCCGTCATTACCACTGGTGCTACTGCTC
CGTTTGGCCTCGCGTGGGGCGGCGTGAGCTGCCGCACGGCAACAAAGAAG
GCAGGTGGTTCGTCCAAGAACGGTCGGGACTCACCAGGGCAGCGCTTGGG
CGTCAAGAAGTTTGGGGGGCAGACAGCGCTGGCGGGCAACATCTTGGTGA
GGCAACGAGGCCTTACGTTCAAGGCCGGGGAGGGGGTGGGCGTGGGGAGG
GACTACACATTATTCGCCTTGCGGCCGGGATGGGTGAAGTTTTCGTACGA
CGTGCACCGCAAGAAGTCGTACGTGCATATAGCCGATTCGAGTCCGCATC
CCCACGAGCAGCTAGCAGCAGCAGGAGCAACAGGAGCTGCAGCGACTAAA
GCGGCATCGTCGTGA
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Synonyms
Publications