jgi.p|Nanoce1779_2|584891, mRNA_3196 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584891
Unique NamemRNA_3196
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1116
Alignment locationscaffold_7:891813..892928 -

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Properties
Property NameValue
TranscriptId584977
TrackFilteredModels2
ProteinId584891
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:891813..892928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584891gene_3196Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584891mRNA_3196-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3196CDS_3196Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3196 ID=mRNA_3196|Name=jgi.p|Nanoce1779_2|584891|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
CAGGACACAAGACCTATCGACACGTCCAGGACTCAACATAATGACGGCCA
CCAGCAGCTTGCCACGCCCGTCACGCCTGCTCCTCCTTTTGCGAGTTTGC
TTTCTATCCTCGTCCATATCCTGTGCTTTCCTTCTACCAGCGCCTTCCCC
CTCACCATCGACCGCTATTTTCGCCGTCCCCTCCCCTACGACCTCACCAC
CCGCAGTCGAGATCTACAAAGGCTTTTGGGAAGAGGCCAAAGCCATGATG
GACGCGCGACAAGCTACCCTCCCCTGGCAATGTTCATCAATACCTGTAGA
CCTACAACGCAAGGAATGCACCACATCGGGGAAAGGTAAACGACCAGACA
CGTCGACGGTGGTCGAGATTCACGCCTATGCCGTGCCAGGTCGCATTCGA
CAAGCCCGGGCCGCTGTCCTCTCCACCGTACCAGCCGTCCCTCCGAATGT
ATTGAATTTTGTGGTGTTTCCTGAACCAGAGTTGGAATTGCCTGTATTTG
GGGCAGATTTTGTAGCTTTACCTGGAGGACATCTAATTGTCCTCGATTTT
CAGCCTATGTCGAGCTCGTCCTTGCGCGTGGCGGAAGACGCATTAAAGGA
GGTACACTTTAAGTATAAGGCGTTGTTACCACCGATCGGAGGAGAGATCC
CCGAGGCGGCGCGGTCATTTTTTTCGCCGTATTTTTTGTTCGTAAGGGCG
GAAGATGATGGGTTGGTTCAGACTGTTGTATTCGAGGCGTTCAGGGCTTA
CTTTTCTATTTATCTCGATTTGGTAGAACAGGCGAGGCCGGTGCCTGTGG
AGGAGGAGGGGAGAAGAAAGGAGATGGTAGAAGGGCATAAGAGGTATGCG
ACGTACAGGGCGGTGAATGACCCGGCGAGGGGAATGTTGACCAGGATGTA
TGGGGAGGAGTGGACCGAAAGGCTAATTTATGAGGTGTTGTTTGATCAAG
CCGAAAGGAAGATAATTGAGGAGTAGAGGGTGATATTAGATGATTCATAA
TGGGCAAATAAAGTGGAACGTGCAAATAATTTGGAAAGTAAAACATCAGG
CATTAGTTAATCACTCCCTCCAGAAAATTAATTGAAATTAACCACCCGAA
CTCTGACAAACACCCG
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protein sequence of jgi.p|Nanoce1779_2|584891

>mRNA_3196-protein ID=mRNA_3196-protein|Name=jgi.p|Nanoce1779_2|584891|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MTATSSLPRPSRLLLLLRVCFLSSSISCAFLLPAPSPSPSTAIFAVPSPT
TSPPAVEIYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGK
RPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELEL
PVFGADFVALPGGHLIVLDFQPMSSSSLRVAEDALKEVHFKYKALLPPIG
GEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARP
VPVEEEGRRKEMVEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVL
FDQAERKIIEE*
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mRNA from alignment at scaffold_7:891813..892928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3196 ID=mRNA_3196|Name=jgi.p|Nanoce1779_2|584891|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp|location=Sequence derived from alignment at scaffold_7:891813..892928- (Nannochloropsis oceanica)
CAGGACACAAGACCTATCGACACGTCCAGGACTCAACATAATGACGGCCA
CCAGCAGCTTGCCACGCCCGTCACGCCTGCTCCTCCTTTTGCGAGTTTGC
TTTCTATCCTCGTCCATATCCTGTGCTTTCCTTCTACCAGCGCCTTCCCC
CTCACCATCGACCGCTATTTTCGCCGTCCCCTCCCCTACGACCTCACCAC
CCGCAGTCGAGATCTACAAAGGCTTTTGGGAAGAGGCCAAAGCCATGATG
GACGCGCGACAAGCTACCCTCCCCTGGCAATGTTCATCAATACCTGTAGA
CCTACAACGCAAGGAATGCACCACATCGGGGAAAGGTAAACGACCAGACA
CGTCGACGGTGGTCGAGATTCACGCCTATGCCGTGCCAGGTCGCATTCGA
CAAGCCCGGGCCGCTGTCCTCTCCACCGTACCAGCCGTCCCTCCGAATGT
ATTGAATTTTGTGGTGTTTCCTGAACCAGAGTTGGAATTGCCTGTATTTG
GGGCAGATTTTGTAGCTTTACCTGGAGGACATCTAATTGTCCTCGATTTT
CAGCCTATGTCGAGCTCGTCCTTGCGCGTGGCGGAAGACGCATTAAAGGA
GGTACACTTTAAGTATAAGGCGTTGTTACCACCGATCGGAGGAGAGATCC
CCGAGGCGGCGCGGTCATTTTTTTCGCCGTATTTTTTGTTCGTAAGGGCG
GAAGATGATGGGTTGGTTCAGACTGTTGTATTCGAGGCGTTCAGGGCTTA
CTTTTCTATTTATCTCGATTTGGTAGAACAGGCGAGGCCGGTGCCTGTGG
AGGAGGAGGGGAGAAGAAAGGAGATGGTAGAAGGGCATAAGAGGTATGCG
ACGTACAGGGCGGTGAATGACCCGGCGAGGGGAATGTTGACCAGGATGTA
TGGGGAGGAGTGGACCGAAAGGCTAATTTATGAGGTGTTGTTTGATCAAG
CCGAAAGGAAGATAATTGAGGAGTAGAGGGTGATATTAGATGATTCATAA
TGGGCAAATAAAGTGGAACGTGCAAATAATTTGGAAAGTAAAACATCAGG
CATTAGTTAATCACTCCCTCCAGAAAATTAATTGAAATTAACCACCCGAA
CTCTGACAAACACCCG
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Coding sequence (CDS) from alignment at scaffold_7:891813..892928-

>mRNA_3196 ID=mRNA_3196|Name=jgi.p|Nanoce1779_2|584891|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_7:891813..892928- (Nannochloropsis oceanica)
ATGACGGCCACCAGCAGCTTGCCACGCCCGTCACGCCTGCTCCTCCTTTT
GCGAGTTTGCTTTCTATCCTCGTCCATATCCTGTGCTTTCCTTCTACCAG
CGCCTTCCCCCTCACCATCGACCGCTATTTTCGCCGTCCCCTCCCCTACG
ACCTCACCACCCGCAGTCGAGATCTACAAAGGCTTTTGGGAAGAGGCCAA
AGCCATGATGGACGCGCGACAAGCTACCCTCCCCTGGCAATGTTCATCAA
TACCTGTAGACCTACAACGCAAGGAATGCACCACATCGGGGAAAGGTAAA
CGACCAGACACGTCGACGGTGGTCGAGATTCACGCCTATGCCGTGCCAGG
TCGCATTCGACAAGCCCGGGCCGCTGTCCTCTCCACCGTACCAGCCGTCC
CTCCGAATGTATTGAATTTTGTGGTGTTTCCTGAACCAGAGTTGGAATTG
CCTGTATTTGGGGCAGATTTTGTAGCTTTACCTGGAGGACATCTAATTGT
CCTCGATTTTCAGCCTATGTCGAGCTCGTCCTTGCGCGTGGCGGAAGACG
CATTAAAGGAGGTACACTTTAAGTATAAGGCGTTGTTACCACCGATCGGA
GGAGAGATCCCCGAGGCGGCGCGGTCATTTTTTTCGCCGTATTTTTTGTT
CGTAAGGGCGGAAGATGATGGGTTGGTTCAGACTGTTGTATTCGAGGCGT
TCAGGGCTTACTTTTCTATTTATCTCGATTTGGTAGAACAGGCGAGGCCG
GTGCCTGTGGAGGAGGAGGGGAGAAGAAAGGAGATGGTAGAAGGGCATAA
GAGGTATGCGACGTACAGGGCGGTGAATGACCCGGCGAGGGGAATGTTGA
CCAGGATGTATGGGGAGGAGTGGACCGAAAGGCTAATTTATGAGGTGTTG
TTTGATCAAGCCGAAAGGAAGATAATTGAGGAGTAG
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Synonyms
Publications