jgi.p|Nanoce1779_2|669973, mRNA_3195 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669973
Unique Name	mRNA_3195
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1310
Alignment location	scaffold_7:890271..891812 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670059
Track	FilteredModels2
ProteinId	669973

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:890271..891812 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669973	gene_3195	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669973	mRNA_3195-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3195	CDS_3195	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:890271..891812+
coding sequence from alignment at scaffold_7:890271..891812+

mRNA sequence

>mRNA_3195 ID=mRNA_3195|Name=jgi.p|Nanoce1779_2|669973|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp
AAAGATGCGTGATGATAAATCGACATTGCGTCGCTCATGTATCACGATCA
TCGCGTCAAGAACTATTCTTTCCCCATTCCACAGACACGCTCAAGCGCTT
GCCGCCCTCCTTCGCCACTTTAAGATGACAAGTTTTTGAGTTTGCACTGC
CCCGCCTTCTCCCTCCCACTCCCACTCTCCAAAGACAGCGCCACGCGGTT
GTGCTGCAGCAACGCAGCCATACCGCACGATGAAGCAGAACAATAAACTG
CAAGCTGTCGTCCTCCCCGTCCTCCTCGTCCTCCTCATCATCCCCGCTAC
TACAGCCTTTCACAATAAAGCACCAGCAAGAAGAGCTCGCCAGGTCGCTG
TCCATGCCAACTCGCCCTCCTCGTCCTCCTCCTCGTCCTCCTCCATACCA
GACCGCCGCCAGGCCATTACAACTTTCACCTCCTCCCTCGTCGCCGCGAC
CGCTGCAGCCTCCCTCCTTGGGCCCTCCCCACCACCCGCAAATGCCGCGG
CGACCAATGAAGCAGATGGCTTGCCTCCGTATCCTGCCGAAGTGACAGCC
AAGGCTTACTTTGACATCCGCATCACGGGTTTCGTGACTGGGGAGGAAAA
AGCGACTTCGGAGGACTTCGTGGGTCGTTTGGTCTTCGGTCTATTCGGGA
ATGCCGCGCCTTTGGCCGTGGGGGAGTTCTTGAAGTACAGCAAGGCCAAA
TACGGAGGAAATCTGCCCAGTTATGCGTTTTCAAATTTCATCAAACGTAC
ACCAGGAGTGTCGGTGCAAGCGGGGCGGATTAAGGGGTTGAAAGAGATTG
AGATTGCGGGGTCGAGGCAGTACGAGTACGGGGACCAGGTGTTGGGGAGC
AGGGGGATAGATGAGCCCAAGCTGAACTTGAAGCATGATAGAAGGGGGTT
GTTGACAAAGAGCAGCTCCCAGGATGCTATTGACTCCCAGTTTGATATCA
CGCTGGGGCCACTTCCTGCATTGGACAATGGCGATTCGTTGGTTTTTGGA
GTCGTGCTGGAGGGACAGGCAGCCCTAGACGCGATTGAAAATGTTCCGAT
CTACACTTATGAAAGCACAGGCGACCAACCCGAGGCCCTCAACGAGCTCT
TCTCCCAACAGAAGAAATTGTTTTTATCCGTTGCCAAATCCTTGAACGAT
GAACGTGCAGTAAATCGGCAAGGATCATTCTTGAAGCGGGTAGAGGTACT
GGATGTGGGGGTGCTGTAGCTGCTGTAGTTACCAGGAATCAGAAAGTAGG
ATACAGATAATAGGGACATCAATAAAGAAAGAGACGAAATTAGGAAAAGA
AATCGCTCCG

protein sequence of jgi.p|Nanoce1779_2|669973

>mRNA_3195-protein ID=mRNA_3195-protein|Name=jgi.p|Nanoce1779_2|669973|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MKQNNKLQAVVLPVLLVLLIIPATTAFHNKAPARRARQVAVHANSPSSSS
SSSSSIPDRRQAITTFTSSLVAATAAASLLGPSPPPANAAATNEADGLPP
YPAEVTAKAYFDIRITGFVTGEEKATSEDFVGRLVFGLFGNAAPLAVGEF
LKYSKAKYGGNLPSYAFSNFIKRTPGVSVQAGRIKGLKEIEIAGSRQYEY
GDQVLGSRGIDEPKLNLKHDRRGLLTKSSSQDAIDSQFDITLGPLPALDN
GDSLVFGVVLEGQAALDAIENVPIYTYESTGDQPEALNELFSQQKKLFLS
VAKSLNDERAVNRQGSFLKRVEVLDVGVL*

mRNA from alignment at scaffold_7:890271..891812+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3195 ID=mRNA_3195|Name=jgi.p|Nanoce1779_2|669973|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at scaffold_7:890271..891812+ (Nannochloropsis oceanica)
AAAGATGCGTGATGATAAATCGACATTGCGTCGCTCATGTATCACGATCA
TCGCGTCAAGAACTATTCTTTCCCCATTCCACAGACACGCTCAAGCGCTT
GCCGCCCTCCTTCGCCACTTTAAGATGACAAGTTTTTGAGTTTGCACTGC
CCCGCCTTCTCCCTCCCACTCCCACTCTCCAAAGACAGCGCCACGCGGTT
GTGCTGCAGCAACGCAGCCATACCGCACGATGAAGCAGAACAATAAACTG
CAAGCTGTCGTCCTCCCCGTCCTCCTCGTCCTCCTCATCATCCCCGCTAC
TACAGCCTTTCACAATAAAGCACCAGCAAGAAGAGCTCGCCAGGTCGCTG
TCCATGCCAACTCGCCCTCCTCGTCCTCCTCCTCGTCCTCCTCCATACCA
GACCGCCGCCAGGCCATTACAACTTTCACCTCCTCCCTCGTCGCCGCGAC
CGCTGCAGCCTCCCTCCTTGGGCCCTCCCCACCACCCGCAAATGCCGCGG
CGACCAATGAAGCAGATGGCTTGCCTCCGTATCCTGCCGAAGTGACAGCC
AAGGCTTACTTTGACATCCGCATCACGGGTTTCGTGACTGGGGAGGAAAA
AGCGACTTCGGAGGACTTCGTGGGTCGTTTGGTCTTCGGTCTATTCGGGA
ATGCCGCGCCTTTGGCCGTGGGGGAGTTCTTGAAGTACAGCAAGGCCAAA
TACGGAGGAAATCTGCCCAGTTATGCGTTTTCAAATTTCATCAAACGTAC
ACCAGGAGTGTCGGTGCAAGCGGGGCGGATTAAGGGGTTGAAAGAGATTG
AGATTGCGGGGTCGAGGCAGTACGAGTACGGGGACCAGGTGTTGGGGAGC
AGGGGGATAGATGAGCCCAAGCTGAACTTGAAGCATGATAGAAGGGGGTT
GTTGACAAAGAGCAGGTAAGTGCACCGTGGTTCTTTTATTTATTCGTCCT
TTTATTCAATTTACCAGTCTATTTTCACAGCTCCCAGGATGCTATTGACT
CCCAGTTTGATATCACGCTGGGGCCACTTCCTGCATTGGACAATGGCGAT
TCGTTGGTTTTTGGAGTCGTGCTGGAGGGACAGGCAGCCCTAGACGCGAT
TGAAAATGTGCGTATTTGTCTGTCATGAAGTGTGCGTCTGCAATTTTATA
CGTGAGCAGCTCTTCAGTCCTGCTCCATATTATCACCTTCATTGAGCTTT
ATTCTCACTCTCCCTAAACCATTCCTCCCTCTTTCCATTCCTTCCTCCCT
TCTACCCATCCCTCCTACACACAGGTTCCGATCTACACTTATGAAAGCAC
AGGCGACCAACCCGAGGCCCTCAACGAGCTCTTCTCCCAACAGAAGAAAT
TGTTTTTATCCGTTGCCAAATCCTTGAACGATGAACGTGCAGTAAATCGG
CAAGGATCATTCTTGAAGCGGGTAGAGGTACTGGATGTGGGGGTGCTGTA
GCTGCTGTAGTTACCAGGAATCAGAAAGTAGGATACAGATAATAGGGACA
TCAATAAAGAAAGAGACGAAATTAGGAAAAGAAATCGCTCCG

Coding sequence (CDS) from alignment at scaffold_7:890271..891812+

>mRNA_3195 ID=mRNA_3195|Name=jgi.p|Nanoce1779_2|669973|organism=Nannochloropsis oceanica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_7:890271..891812+ (Nannochloropsis oceanica)
ATGAAGCAGAACAATAAACTGCAAGCTGTCGTCCTCCCCGTCCTCCTCGT
CCTCCTCATCATCCCCGCTACTACAGCCTTTCACAATAAAGCACCAGCAA
GAAGAGCTCGCCAGGTCGCTGTCCATGCCAACTCGCCCTCCTCGTCCTCC
TCCTCGTCCTCCTCCATACCAGACCGCCGCCAGGCCATTACAACTTTCAC
CTCCTCCCTCGTCGCCGCGACCGCTGCAGCCTCCCTCCTTGGGCCCTCCC
CACCACCCGCAAATGCCGCGGCGACCAATGAAGCAGATGGCTTGCCTCCG
TATCCTGCCGAAGTGACAGCCAAGGCTTACTTTGACATCCGCATCACGGG
TTTCGTGACTGGGGAGGAAAAAGCGACTTCGGAGGACTTCGTGGGTCGTT
TGGTCTTCGGTCTATTCGGGAATGCCGCGCCTTTGGCCGTGGGGGAGTTC
TTGAAGTACAGCAAGGCCAAATACGGAGGAAATCTGCCCAGTTATGCGTT
TTCAAATTTCATCAAACGTACACCAGGAGTGTCGGTGCAAGCGGGGCGGA
TTAAGGGGTTGAAAGAGATTGAGATTGCGGGGTCGAGGCAGTACGAGTAC
GGGGACCAGGTGTTGGGGAGCAGGGGGATAGATGAGCCCAAGCTGAACTT
GAAGCATGATAGAAGGGGGTTGTTGACAAAGAGCAGCTCCCAGGATGCTA
TTGACTCCCAGTTTGATATCACGCTGGGGCCACTTCCTGCATTGGACAAT
GGCGATTCGTTGGTTTTTGGAGTCGTGCTGGAGGGACAGGCAGCCCTAGA
CGCGATTGAAAATGTTCCGATCTACACTTATGAAAGCACAGGCGACCAAC
CCGAGGCCCTCAACGAGCTCTTCTCCCAACAGAAGAAATTGTTTTTATCC
GTTGCCAAATCCTTGAACGATGAACGTGCAGTAAATCGGCAAGGATCATT
CTTGAAGCGGGTAGAGGTACTGGATGTGGGGGTGCTGTAGATGAAGCAGA
ACAATAAACTGCAAGCTGTCGTCCTCCCCGTCCTCCTCGTCCTCCTCATC
ATCCCCGCTACTACAGCCTTTCACAATAAAGCACCAGCAAGAAGAGCTCG
CCAGGTCGCTGTCCATGCCAACTCGCCCTCCTCGTCCTCCTCCTCGTCCT
CCTCCATACCAGACCGCCGCCAGGCCATTACAACTTTCACCTCCTCCCTC
GTCGCCGCGACCGCTGCAGCCTCCCTCCTTGGGCCCTCCCCACCACCCGC
AAATGCCGCGGCGACCAATGAAGCAGATGGCTTGCCTCCGTATCCTGCCG
AAGTGACAGCCAAGGCTTACTTTGACATCCGCATCACGGGTTTCGTGACT
GGGGAGGAAAAAGCGACTTCGGAGGACTTCGTGGGTCGTTTGGTCTTCGG
TCTATTCGGGAATGCCGCGCCTTTGGCCGTGGGGGAGTTCTTGAAGTACA
GCAAGGCCAAATACGGAGGAAATCTGCCCAGTTATGCGTTTTCAAATTTC
ATCAAACGTACACCAGGAGTGTCGGTGCAAGCGGGGCGGATTAAGGGGTT
GAAAGAGATTGAGATTGCGGGGTCGAGGCAGTACGAGTACGGGGACCAGG
TGTTGGGGAGCAGGGGGATAGATGAGCCCAAGCTGAACTTGAAGCATGAT
AGAAGGGGGTTGTTGACAAAGAGCAGCTCCCAGGATGCTATTGACTCCCA
GTTTGATATCACGCTGGGGCCACTTCCTGCATTGGACAATGGCGATTCGT
TGGTTTTTGGAGTCGTGCTGGAGGGACAGGCAGCCCTAGACGCGATTGAA
AATGTTCCGATCTACACTTATGAAAGCACAGGCGACCAACCCGAGGCCCT
CAACGAGCTCTTCTCCCAACAGAAGAAATTGTTTTTATCCGTTGCCAAAT
CCTTGAACGATGAACGTGCAGTAAATCGGCAAGGATCATTCTTGAAGCGG
GTAGAGGTACTGGATGTGGGGGTGCTGTAGATGAAGCAGAACAATAAACT
GCAAGCTGTCGTCCTCCCCGTCCTCCTCGTCCTCCTCATCATCCCCGCTA
CTACAGCCTTTCACAATAAAGCACCAGCAAGAAGAGCTCGCCAGGTCGCT
GTCCATGCCAACTCGCCCTCCTCGTCCTCCTCCTCGTCCTCCTCCATACC
AGACCGCCGCCAGGCCATTACAACTTTCACCTCCTCCCTCGTCGCCGCGA
CCGCTGCAGCCTCCCTCCTTGGGCCCTCCCCACCACCCGCAAATGCCGCG
GCGACCAATGAAGCAGATGGCTTGCCTCCGTATCCTGCCGAAGTGACAGC
CAAGGCTTACTTTGACATCCGCATCACGGGTTTCGTGACTGGGGAGGAAA
AAGCGACTTCGGAGGACTTCGTGGGTCGTTTGGTCTTCGGTCTATTCGGG
AATGCCGCGCCTTTGGCCGTGGGGGAGTTCTTGAAGTACAGCAAGGCCAA
ATACGGAGGAAATCTGCCCAGTTATGCGTTTTCAAATTTCATCAAACGTA
CACCAGGAGTGTCGGTGCAAGCGGGGCGGATTAAGGGGTTGAAAGAGATT
GAGATTGCGGGGTCGAGGCAGTACGAGTACGGGGACCAGGTGTTGGGGAG
CAGGGGGATAGATGAGCCCAAGCTGAACTTGAAGCATGATAGAAGGGGGT
TGTTGACAAAGAGCAGCTCCCAGGATGCTATTGACTCCCAGTTTGATATC
ACGCTGGGGCCACTTCCTGCATTGGACAATGGCGATTCGTTGGTTTTTGG
AGTCGTGCTGGAGGGACAGGCAGCCCTAGACGCGATTGAAAATGTTCCGA
TCTACACTTATGAAAGCACAGGCGACCAACCCGAGGCCCTCAACGAGCTC
TTCTCCCAACAGAAGAAATTGTTTTTATCCGTTGCCAAATCCTTGAACGA
TGAACGTGCAGTAAATCGGCAAGGATCATTCTTGAAGCGGGTAGAGGTAC
TGGATGTGGGGGTGCTGTAG

Synonyms

Publications