jgi.p|Nanoce1779_2|584881, mRNA_3192 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584881
Unique NamemRNA_3192
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1235
Alignment locationscaffold_7:885750..886984 -

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Properties
Property NameValue
TranscriptId584967
TrackFilteredModels2
ProteinId584881
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:885750..886984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584881gene_3192Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584881mRNA_3192-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3192CDS_3192Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3192 ID=mRNA_3192|Name=jgi.p|Nanoce1779_2|584881|organism=Nannochloropsis oceanica|type=mRNA|length=1235bp
CTCGCTCCAGGGGGATGGGGGAAAAGGGGCTTGCTAGGAGGAAAGTCAGG
AAGGAGGGCAGAAGGGAAGGCGAGTCAAGCGGTGTTGGCACCGACGACGG
CTTGGCGAGCTCCTCCGCGGCTAGTCATCCGACGAGAGGACGACGACGAC
CGAGGTGGAGAAGGGAGAGAAGGGGGAAAGGCGAAGTCGACAACGACCCC
GGAGACGGTGCGTTTGGAAGCGGAGCAAAAGGGTAGGCTGGAGATGCATT
ACATACGGGAGGGGGATATACCTCCAACACCGATGGAGGGAGGGTCAGTG
AGGGAACCACAGGAAGACTTCGTGGTGATCACCACGAGCGCGTTTTTGTT
CCCAGTGATGGATGCAGGAGAGAGTATGTCGATATCGCCCATTTCAAGCG
CGATGGGCAGCAGTACGAATGGTAGTGGCGTACTGAGTGCGCTTCCTCAG
TGGGTTCAGGATCGTCTGGCAGCGAATGGGAATGAGCTGTTGCAGCTTTG
TTATTACCCTGGAGGGGGAAGAGGGCTAGACGAGGGGAGGGTACGAGACA
TCACACGCCTTCTAATGGCGGCTGCTGGAGCTGGGCTGGAGGTACATGTG
CAGATAAGATTGTGTAGGGATGTATCGAAGTTTCTACCGTGTCTCCGGCT
GGATGGGAGCTTGGACATGGGGTTGATGGCACGGGCGTTTGCGGATGAGG
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGGGTGGCGAACCTCCT
CGTTATGGTGGGAGAGGAGGAGTGGGAGGACGAGGAGGGGTAAATCCGTC
AATGTTTGAACCCCCGCCACTCGAGCCCAACTACCCTCCCCTTTCTCCTT
CTCTTCCTTCCCGACCTCTTCCTCATGGCGCACCAGCACCAGGAAAGCAC
TATTACCAAGCCCAACACAACCATCAACAGCAGCAGCAGAAGCAACAGCG
GCAGCAGCAGAAACAGTTACAGGAACACGTGCCTCGCTACTGGAAGCCTT
GCAAATATTTCAGTCCCAACAAAGCGGGAAGTTGTCGATTCGGTGACCGG
TGCCAGTTCGTCCATGATGGCGTCAGTGTGCAACGCCGCGATCCACGACA
ACCGGGAGGAAGCGTTTGAGTACAGGCATGGAAGGAGGAAGAGAGGGAGG
CAATCAGGTGGAAGCAAAATTTGGTGTGATTGGGTTTTCAAATGGGAGTA
CATTCATCAAAAATAAAGGCTATGCGATCGTCCGG
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protein sequence of jgi.p|Nanoce1779_2|584881

>mRNA_3192-protein ID=mRNA_3192-protein|Name=jgi.p|Nanoce1779_2|584881|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MHYIREGDIPPTPMEGGSVREPQEDFVVITTSAFLFPVMDAGESMSISPI
SSAMGSSTNGSGVLSALPQWVQDRLAANGNELLQLCYYPGGGRGLDEGRV
RDITRLLMAAAGAGLEVHVQIRLCRDVSKFLPCLRLDGSLDMGLMARAFA
DEEKQQQQQQQQQWGGEPPRYGGRGGVGGRGGVNPSMFEPPPLEPNYPPL
SPSLPSRPLPHGAPAPGKHYYQAQHNHQQQQQKQQRQQQKQLQEHVPRYW
KPCKYFSPNKAGSCRFGDRCQFVHDGVSVQRRDPRQPGGSV*
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mRNA from alignment at scaffold_7:885750..886984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3192 ID=mRNA_3192|Name=jgi.p|Nanoce1779_2|584881|organism=Nannochloropsis oceanica|type=mRNA|length=1235bp|location=Sequence derived from alignment at scaffold_7:885750..886984- (Nannochloropsis oceanica)
CTCGCTCCAGGGGGATGGGGGAAAAGGGGCTTGCTAGGAGGAAAGTCAGG
AAGGAGGGCAGAAGGGAAGGCGAGTCAAGCGGTGTTGGCACCGACGACGG
CTTGGCGAGCTCCTCCGCGGCTAGTCATCCGACGAGAGGACGACGACGAC
CGAGGTGGAGAAGGGAGAGAAGGGGGAAAGGCGAAGTCGACAACGACCCC
GGAGACGGTGCGTTTGGAAGCGGAGCAAAAGGGTAGGCTGGAGATGCATT
ACATACGGGAGGGGGATATACCTCCAACACCGATGGAGGGAGGGTCAGTG
AGGGAACCACAGGAAGACTTCGTGGTGATCACCACGAGCGCGTTTTTGTT
CCCAGTGATGGATGCAGGAGAGAGTATGTCGATATCGCCCATTTCAAGCG
CGATGGGCAGCAGTACGAATGGTAGTGGCGTACTGAGTGCGCTTCCTCAG
TGGGTTCAGGATCGTCTGGCAGCGAATGGGAATGAGCTGTTGCAGCTTTG
TTATTACCCTGGAGGGGGAAGAGGGCTAGACGAGGGGAGGGTACGAGACA
TCACACGCCTTCTAATGGCGGCTGCTGGAGCTGGGCTGGAGGTACATGTG
CAGATAAGATTGTGTAGGGATGTATCGAAGTTTCTACCGTGTCTCCGGCT
GGATGGGAGCTTGGACATGGGGTTGATGGCACGGGCGTTTGCGGATGAGG
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGGGTGGCGAACCTCCT
CGTTATGGTGGGAGAGGAGGAGTGGGAGGACGAGGAGGGGTAAATCCGTC
AATGTTTGAACCCCCGCCACTCGAGCCCAACTACCCTCCCCTTTCTCCTT
CTCTTCCTTCCCGACCTCTTCCTCATGGCGCACCAGCACCAGGAAAGCAC
TATTACCAAGCCCAACACAACCATCAACAGCAGCAGCAGAAGCAACAGCG
GCAGCAGCAGAAACAGTTACAGGAACACGTGCCTCGCTACTGGAAGCCTT
GCAAATATTTCAGTCCCAACAAAGCGGGAAGTTGTCGATTCGGTGACCGG
TGCCAGTTCGTCCATGATGGCGTCAGTGTGCAACGCCGCGATCCACGACA
ACCGGGAGGAAGCGTTTGAGTACAGGCATGGAAGGAGGAAGAGAGGGAGG
CAATCAGGTGGAAGCAAAATTTGGTGTGATTGGGTTTTCAAATGGGAGTA
CATTCATCAAAAATAAAGGCTATGCGATCGTCCGG
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Coding sequence (CDS) from alignment at scaffold_7:885750..886984-

>mRNA_3192 ID=mRNA_3192|Name=jgi.p|Nanoce1779_2|584881|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_7:885750..886984- (Nannochloropsis oceanica)
ATGCATTACATACGGGAGGGGGATATACCTCCAACACCGATGGAGGGAGG
GTCAGTGAGGGAACCACAGGAAGACTTCGTGGTGATCACCACGAGCGCGT
TTTTGTTCCCAGTGATGGATGCAGGAGAGAGTATGTCGATATCGCCCATT
TCAAGCGCGATGGGCAGCAGTACGAATGGTAGTGGCGTACTGAGTGCGCT
TCCTCAGTGGGTTCAGGATCGTCTGGCAGCGAATGGGAATGAGCTGTTGC
AGCTTTGTTATTACCCTGGAGGGGGAAGAGGGCTAGACGAGGGGAGGGTA
CGAGACATCACACGCCTTCTAATGGCGGCTGCTGGAGCTGGGCTGGAGGT
ACATGTGCAGATAAGATTGTGTAGGGATGTATCGAAGTTTCTACCGTGTC
TCCGGCTGGATGGGAGCTTGGACATGGGGTTGATGGCACGGGCGTTTGCG
GATGAGGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGGGTGGCGA
ACCTCCTCGTTATGGTGGGAGAGGAGGAGTGGGAGGACGAGGAGGGGTAA
ATCCGTCAATGTTTGAACCCCCGCCACTCGAGCCCAACTACCCTCCCCTT
TCTCCTTCTCTTCCTTCCCGACCTCTTCCTCATGGCGCACCAGCACCAGG
AAAGCACTATTACCAAGCCCAACACAACCATCAACAGCAGCAGCAGAAGC
AACAGCGGCAGCAGCAGAAACAGTTACAGGAACACGTGCCTCGCTACTGG
AAGCCTTGCAAATATTTCAGTCCCAACAAAGCGGGAAGTTGTCGATTCGG
TGACCGGTGCCAGTTCGTCCATGATGGCGTCAGTGTGCAACGCCGCGATC
CACGACAACCGGGAGGAAGCGTTTGA
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Synonyms
Publications