Properties
| Property Name | Value |
|---|
| TranscriptId | 584965 |
| Track | FilteredModels2 |
| ProteinId | 584879 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:883467..885749 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3191 ID=mRNA_3191|Name=jgi.p|Nanoce1779_2|584879|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp
CCCCCCCCCCCCCCCTCCTGTGCAGCAGCAGCAGCAGCAGCGGCATCAGC
AGCATCCTCACGTCGCCCCCCCCTCTCCCCTCCGTCGGCGAGGGCCCCGG
CAGCTAGAGGGCGAGGGTAACGTTAAAAGTATGGATCCTGTCGAGCTTGA
TAAGACTAACATTCTTCTAATTGGTCCAACGGGGAGTGGGAAAACACTTC
TTGCGAAAACACTTGCGCGGCTTGTAGACGTTCCCATCATCATTGCTGAC
TCAACGGCGCTAACGCAGGCAGGCTATGTGGGGGAAGACGTGGAAAGCAT
TCTCTACAAGCTCTATTTGGAGGCAGGGCAGGATCTGGAAAGGGCACAGA
GGGGGATTGTGTATATAGATGAGATTGATAAGATAAGTCGCAAGGGCGAG
AACGTCAGCATCACCCGTGACGTCTCCGGCGAGGGCGTGCAGCAAGCCCT
GCTCAAGCTTGTCGAAGGATCTGTTGTGAATGTCCCGAAGGAAGGCGGGC
GGAAGAATCCCCGAGGAGATTTTATTCCGTTCGACACGAACGACGTGTTG
TTCATCTGTGGGGGGGCTTTTGCCGGGTTGGAGCACACGATCACTAATCG
GTTGAGTGCGGCGAGCATTGGGTTTGGGGCGACCGTCAGGCATAAGGCTG
CCCTGGAAGGACAGACGGCACAGAGCGAAGCGTATGATAAGGTCGAGCCT
TGTGATTTGGTGCAGTACGGCATCCTCCCTGAATTTGTCGGTCGCTTTCC
AGTGGTTGTTTCCACCTCTGGCCTCTCCCTCGAGCAGCTGGTCCGCGTGC
TGACCGAACCCAAGAATGCGTTGATCAAACAATATCGGTATCTCTTCGCT
TTGCATCACGTTGACTTCCACGTGACTACTGAGGCCTTGGAAGAGATTGC
GGCGTTGGCCCTGGCGAAAAATACCGGCGCCCGTGGCTTGAGGAGCATTC
TTGAGAGGGTTCTTATGCAAGCCATGTTCGACATTCCCGACGATCCAAAT
GTCACCGCCATTGTGGTCGACCGTGAATCCGTTCACTCTCGTCATGTTCA
CCTCTTACACGAGCCTATGACCTTGGAAAAATACCTCGCGGAGATGCAGG
GGGAGCACCCGCATCACTCGATGGCGCCGGTGGAAGAGGAGCATCATCAG
CACCAGCCTATGCTAGGTGGGGTGTAGCGGGTTACGGGAATAGGAAGCAG
GGAAGAAATTAAGTATGTGTATAGCTAAAAAAGGACGGCGAAGAAGAAGG
ATAGTGAAGAACATGCAATGATGAGGAGGAAAGCAGCAGAGTTTCTCTTA
GTGTGTGGTTGTCAAAGTGACAACGAGAAAGCAAACTCGGGGGGGCAGAC
ATAATTTGAGAGAAGGCAGAGGTAGATAGCTCTTGGCTCAATATATTAAA
ACAAAGATCATTTATCTCTGAATTAATTCTATTTTTGTTGAGGATGTGCA
TGCGTCGGGTTTTTGCGTCGGGTTTGGGAATGTCAGAGCAGGAGCAGCAG
AACCAGCGGTAGCAAAAGCAGCAGCAGCAGTAGCAGCTGTAGCAGAGAGA
TGGGAAAAAGAAATCAGAGAGGGAGAGAGAACTAAATAGATGAATTGATG
GCTGGTGATGTATAGAGAGTAGAGGATTGGAGAAGACCGAAGCAGCAAAA
AAGACTGTGAAGAAAAGTGGGAAAAGGAAGGGATTGGAAGACAGTATACA
ACAGGGTAGCTTGCCAATCAA back to topprotein sequence of jgi.p|Nanoce1779_2|584879 >mRNA_3191-protein ID=mRNA_3191-protein|Name=jgi.p|Nanoce1779_2|584879|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYV
GEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSG
EGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGL
EHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILP
EFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTT
EALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRES
VHSRHVHLLHEPMTLEKYLAEMQGEHPHHSMAPVEEEHHQHQPMLGGV* back to topmRNA from alignment at scaffold_7:883467..885749+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3191 ID=mRNA_3191|Name=jgi.p|Nanoce1779_2|584879|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp|location=Sequence derived from alignment at scaffold_7:883467..885749+ (Nannochloropsis oceanica)
CCCCCCCCCCCCCCCTCCTGTGCAGCAGCAGCAGCAGCAGCGGCATCAGC
AGCATCCTCACGTCGCCCCCCCCTCTCCCCTCCGTCGGCGAGGGCCCCGG
CAGCTAGAGGGCGAGGGTAACGTTAAAAGTATGGATCCTGTCGAGCTTGA
TAAGACTAACATTCTTCTAATTGGTCCAACGGGGAGTGGGAAAACACTTC
TTGCGAAAACACTTGCGCGGCTTGTAGACGTTCCCATCATCATTGCTGAC
TCAACGGCGCTAACGCAGGCAGGCTATGTGGGGGAAGACGTGGAAAGCAT
TCTCTACAAGCTCTATTTGGAGGCAGGGCAGGATCTGGAAAGGGCACAGA
GGGGGATTGTGTATATAGATGAGATTGATAAGGTAGGGCTCCAGAGATAG
AGGGAGAGAAGTAGCAAGGTGTTAATAGGGGAGTTTGATTTCTTCTTGTC
TTTTGGTTACCATTGCACTGGCTCCACTTGTGATTTCAAGTGGATGTGCG
ACGTGTGTCTAGGCCTTGGAAACAAGAAATAATAAGTAGGTGGCCTCATC
CTCCCCTCCTCCCTCCCTCCCTCCCTACCTCCCTTGATCCTTTCTAGATA
AGTCGCAAGGGCGAGAACGTCAGCATCACCCGTGACGTCTCCGGCGAGGG
CGTGCAGCAAGCCCTGCTCAAGCTTGTCGAAGGATCTGTTGTGAATGTCC
CGAAGGAAGGCGGGCGGAAGAATCCCCGAGGAGATTTTATTCCGTTCGAC
ACGAACGACGTGTTGTTCATCTGTGGGGGGGCTTTTGCCGGGTTGGAGCA
CACGATCACTAATCGGTTGAGTGCGGCGAGCATTGGGTTTGGGGCGACCG
TCAGGCATAAGGCTGCCCTGGAAGGACAGACGGCACAGAGCGAAGCGTAT
GATAAGGTATGCATAAGGTGGATGTGTGTGAGACAGAGGGATTGTGTATA
TAGATGTGTGATAACCCTCACAGAATGTGTGATTGTGGGAAGCGCAAACT
TTAAGAGGGCTCGCTCCTTCTTCCCCCTCTCTTTTTCTCGCCCCCCTTCC
CCAGTTCTTTCTTCTCACTAATATTCTTATTTTTCCACAACAGGTCGAGC
CTTGTGATTTGGTGCAGTACGGCATCCTCCCTGAATTTGTCGGTCGCTTT
CCAGTGGTTGTTTCCACCTCTGGCCTCTCCCTCGAGCAGCTGGTCCGCGT
GCTGACCGAACCCAAGAATGCGTTGATCAAACAATATCGGTATCTCTTCG
CTTTGCATCACGTTGACTTCCACGTGACTACTGAGGCCTTGGAAGAGATT
GCGGCGTTGGCCCTGGCGAAAAATACCGGCGCCCGTGGCTTGAGGAGCAT
TCTTGAGAGGGTAAGTACAGGAAGGCAAAAAAGGAGGGGAGGGGAGAGGA
AGGGAGTGAGAGAGGGGAGGACGGGAGTGTTGTTACCGCATGTGGAGTTT
AACGTGACCTGGGAGGCCTTAGATTAGGCCTGATCGTAATCGCTCCGTGT
GTCCCTCCTTCCTTCCTTAGGTTCTTATGCAAGCCATGTTCGACATTCCC
GACGATCCAAATGTCACCGCCATTGTGGTCGACCGTGAATCCGTTCACTC
TCGTCATGTTCACCTCTTACACGAGCCTATGACCTTGGAAAAATACCTCG
CGGAGATGCAGGGGGAGCACCCGCATCACTCGATGGCGCCGGTGGAAGAG
GAGCATCATCAGCACCAGCCTATGCTAGGTGGGGTGTAGCGGGTTACGGG
AATAGGAAGCAGGGAAGAAATTAAGTATGTGTATAGCTAAAAAAGGACGG
CGAAGAAGAAGGATAGTGAAGAACATGCAATGATGAGGAGGAAAGCAGCA
GAGTTTCTCTTAGTGTGTGGTTGTCAAAGTGACAACGAGAAAGCAAACTC
GGGGGGGCAGACATAATTTGAGAGAAGGCAGAGGTAGATAGCTCTTGGCT
CAATATATTAAAACAAAGATCATTTATCTCTGAATTAATTCTATTTTTGT
TGAGGATGTGCATGCGTCGGGTTTTTGCGTCGGGTTTGGGAATGTCAGAG
CAGGAGCAGCAGAACCAGCGGTAGCAAAAGCAGCAGCAGCAGTAGCAGCT
GTAGCAGAGAGATGGGAAAAAGAAATCAGAGAGGGAGAGAGAACTAAATA
GATGAATTGATGGCTGGTGATGTATAGAGAGTAGAGGATTGGAGAAGACC
GAAGCAGCAAAAAAGACTGTGAAGAAAAGTGGGAAAAGGAAGGGATTGGA
AGACAGTATACAACAGGGTAGCTTGCCAATCAA back to topCoding sequence (CDS) from alignment at scaffold_7:883467..885749+ >mRNA_3191 ID=mRNA_3191|Name=jgi.p|Nanoce1779_2|584879|organism=Nannochloropsis oceanica|type=CDS|length=4188bp|location=Sequence derived from alignment at scaffold_7:883467..885749+ (Nannochloropsis oceanica)
ATGGATCCTGTCGAGCTTGATAAGACTAACATTCTTCTAATTGGTCCAAC
GGGGAGTGGGAAAACACTTCTTGCGAAAACACTTGCGCGGCTTGTAGACG
TTCCCATCATCATTGCTGACTCAACGGCGCTAACGCAGGCAGGCTATGTG
GGGGAAGACGTGGAAAGCATTCTCTACAAGCTCTATTTGGAGGCAGGGCA
GGATCTGGAAAGGGCACAGAGGGGGATTGTGTATATAGATGAGATTGATA
AGATAAGTCGCAAGGGCGAGAACGTCAGCATCACCCGTGACGTCTCCGGC
GAGGGCGTGCAGCAAGCCCTGCTCAAGCTTGTCGAAGGATCTGTTGTGAA
TGTCCCGAAGGAAGGCGGGCGGAAGAATCCCCGAGGAGATTTTATTCCGT
TCGACACGAACGACGTGTTGTTCATCTGTGGGGGGGCTTTTGCCGGGTTG
GAGCACACGATCACTAATCGGTTGAGTGCGGCGAGCATTGGGTTTGGGGC
GACCGTCAGGCATAAGGCTGCCCTGGAAGGACAGACGGCACAGAGCGAAG
CGTATGATAAGGTCGAGCCTTGTGATTTGGTGCAGTACGGCATCCTCCCT
GAATTTGTCGGTCGCTTTCCAGTGGTTGTTTCCACCTCTGGCCTCTCCCT
CGAGCAGCTGGTCCGCGTGCTGACCGAACCCAAGAATGCGTTGATCAAAC
AATATCGGTATCTCTTCGCTTTGCATCACGTTGACTTCCACGTGACTACT
GAGGCCTTGGAAGAGATTGCGGCGTTGGCCCTGGCGAAAAATACCGGCGC
CCGTGGCTTGAGGAGCATTCTTGAGAGGGTTCTTATGCAAGCCATGTTCG
ACATTCCCGACGATCCAAATGTCACCGCCATTGTGGTCGACCGTGAATCC
GTTCACTCTCGTCATGTTCACCTCTTACACGAGCCTATGACCTTGGAAAA
ATACCTCGCGGAGATGCAGGGGGAGCACCCGCATCACTCGATGGCGCCGG
TGGAAGAGGAGCATCATCAGCACCAGCCTATGCTAGGTGGGGTGTAGATG
GATCCTGTCGAGCTTGATAAGACTAACATTCTTCTAATTGGTCCAACGGG
GAGTGGGAAAACACTTCTTGCGAAAACACTTGCGCGGCTTGTAGACGTTC
CCATCATCATTGCTGACTCAACGGCGCTAACGCAGGCAGGCTATGTGGGG
GAAGACGTGGAAAGCATTCTCTACAAGCTCTATTTGGAGGCAGGGCAGGA
TCTGGAAAGGGCACAGAGGGGGATTGTGTATATAGATGAGATTGATAAGA
TAAGTCGCAAGGGCGAGAACGTCAGCATCACCCGTGACGTCTCCGGCGAG
GGCGTGCAGCAAGCCCTGCTCAAGCTTGTCGAAGGATCTGTTGTGAATGT
CCCGAAGGAAGGCGGGCGGAAGAATCCCCGAGGAGATTTTATTCCGTTCG
ACACGAACGACGTGTTGTTCATCTGTGGGGGGGCTTTTGCCGGGTTGGAG
CACACGATCACTAATCGGTTGAGTGCGGCGAGCATTGGGTTTGGGGCGAC
CGTCAGGCATAAGGCTGCCCTGGAAGGACAGACGGCACAGAGCGAAGCGT
ATGATAAGGTCGAGCCTTGTGATTTGGTGCAGTACGGCATCCTCCCTGAA
TTTGTCGGTCGCTTTCCAGTGGTTGTTTCCACCTCTGGCCTCTCCCTCGA
GCAGCTGGTCCGCGTGCTGACCGAACCCAAGAATGCGTTGATCAAACAAT
ATCGGTATCTCTTCGCTTTGCATCACGTTGACTTCCACGTGACTACTGAG
GCCTTGGAAGAGATTGCGGCGTTGGCCCTGGCGAAAAATACCGGCGCCCG
TGGCTTGAGGAGCATTCTTGAGAGGGTTCTTATGCAAGCCATGTTCGACA
TTCCCGACGATCCAAATGTCACCGCCATTGTGGTCGACCGTGAATCCGTT
CACTCTCGTCATGTTCACCTCTTACACGAGCCTATGACCTTGGAAAAATA
CCTCGCGGAGATGCAGGGGGAGCACCCGCATCACTCGATGGCGCCGGTGG
AAGAGGAGCATCATCAGCACCAGCCTATGCTAGGTGGGGTGTAGATGGAT
CCTGTCGAGCTTGATAAGACTAACATTCTTCTAATTGGTCCAACGGGGAG
TGGGAAAACACTTCTTGCGAAAACACTTGCGCGGCTTGTAGACGTTCCCA
TCATCATTGCTGACTCAACGGCGCTAACGCAGGCAGGCTATGTGGGGGAA
GACGTGGAAAGCATTCTCTACAAGCTCTATTTGGAGGCAGGGCAGGATCT
GGAAAGGGCACAGAGGGGGATTGTGTATATAGATGAGATTGATAAGATAA
GTCGCAAGGGCGAGAACGTCAGCATCACCCGTGACGTCTCCGGCGAGGGC
GTGCAGCAAGCCCTGCTCAAGCTTGTCGAAGGATCTGTTGTGAATGTCCC
GAAGGAAGGCGGGCGGAAGAATCCCCGAGGAGATTTTATTCCGTTCGACA
CGAACGACGTGTTGTTCATCTGTGGGGGGGCTTTTGCCGGGTTGGAGCAC
ACGATCACTAATCGGTTGAGTGCGGCGAGCATTGGGTTTGGGGCGACCGT
CAGGCATAAGGCTGCCCTGGAAGGACAGACGGCACAGAGCGAAGCGTATG
ATAAGGTCGAGCCTTGTGATTTGGTGCAGTACGGCATCCTCCCTGAATTT
GTCGGTCGCTTTCCAGTGGTTGTTTCCACCTCTGGCCTCTCCCTCGAGCA
GCTGGTCCGCGTGCTGACCGAACCCAAGAATGCGTTGATCAAACAATATC
GGTATCTCTTCGCTTTGCATCACGTTGACTTCCACGTGACTACTGAGGCC
TTGGAAGAGATTGCGGCGTTGGCCCTGGCGAAAAATACCGGCGCCCGTGG
CTTGAGGAGCATTCTTGAGAGGGTTCTTATGCAAGCCATGTTCGACATTC
CCGACGATCCAAATGTCACCGCCATTGTGGTCGACCGTGAATCCGTTCAC
TCTCGTCATGTTCACCTCTTACACGAGCCTATGACCTTGGAAAAATACCT
CGCGGAGATGCAGGGGGAGCACCCGCATCACTCGATGGCGCCGGTGGAAG
AGGAGCATCATCAGCACCAGCCTATGCTAGGTGGGGTGTAGATGGATCCT
GTCGAGCTTGATAAGACTAACATTCTTCTAATTGGTCCAACGGGGAGTGG
GAAAACACTTCTTGCGAAAACACTTGCGCGGCTTGTAGACGTTCCCATCA
TCATTGCTGACTCAACGGCGCTAACGCAGGCAGGCTATGTGGGGGAAGAC
GTGGAAAGCATTCTCTACAAGCTCTATTTGGAGGCAGGGCAGGATCTGGA
AAGGGCACAGAGGGGGATTGTGTATATAGATGAGATTGATAAGATAAGTC
GCAAGGGCGAGAACGTCAGCATCACCCGTGACGTCTCCGGCGAGGGCGTG
CAGCAAGCCCTGCTCAAGCTTGTCGAAGGATCTGTTGTGAATGTCCCGAA
GGAAGGCGGGCGGAAGAATCCCCGAGGAGATTTTATTCCGTTCGACACGA
ACGACGTGTTGTTCATCTGTGGGGGGGCTTTTGCCGGGTTGGAGCACACG
ATCACTAATCGGTTGAGTGCGGCGAGCATTGGGTTTGGGGCGACCGTCAG
GCATAAGGCTGCCCTGGAAGGACAGACGGCACAGAGCGAAGCGTATGATA
AGGTCGAGCCTTGTGATTTGGTGCAGTACGGCATCCTCCCTGAATTTGTC
GGTCGCTTTCCAGTGGTTGTTTCCACCTCTGGCCTCTCCCTCGAGCAGCT
GGTCCGCGTGCTGACCGAACCCAAGAATGCGTTGATCAAACAATATCGGT
ATCTCTTCGCTTTGCATCACGTTGACTTCCACGTGACTACTGAGGCCTTG
GAAGAGATTGCGGCGTTGGCCCTGGCGAAAAATACCGGCGCCCGTGGCTT
GAGGAGCATTCTTGAGAGGGTTCTTATGCAAGCCATGTTCGACATTCCCG
ACGATCCAAATGTCACCGCCATTGTGGTCGACCGTGAATCCGTTCACTCT
CGTCATGTTCACCTCTTACACGAGCCTATGACCTTGGAAAAATACCTCGC
GGAGATGCAGGGGGAGCACCCGCATCACTCGATGGCGCCGGTGGAAGAGG
AGCATCATCAGCACCAGCCTATGCTAGGTGGGGTGTAG back to top
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