Properties
| Property Name | Value |
|---|
| TranscriptId | 400336 |
| Track | FilteredModels2 |
| ProteinId | 400250 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:881590..883656 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3190 ID=mRNA_3190|Name=jgi.p|Nanoce1779_2|400250|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp
AAGCCAACGAATAGAACAAGGACGACAACAGCAGGAGCAGCAACAACGGC
AACAACGGCAACCACCAGACGGAGACGGCGCCCCTGTGGATGGAGTGAGA
TGGAGAAAGACAGGGAGGAGCCAGAGCAACATCACGCGAAAATAACACAT
GGTGGAAGAAATCAAAGGCAGAAGAGGGGGAGAAAAATGAAATTTCTCGT
GGCGCTGGGGCTTCACAGTAATATAAGGAGAAGTGAGGCGAGGCGAAGGA
CGATAGGGTGGGATATGTGTACGTACGTGCGTCTGGGTTGGAGCTTACAA
GCGAAGAAAAGAATTGGAAGAAACGCTCTAACATTACAGAGAAGTCAATT
TGCCAGGTCTTGTTGTTACTTCTCTCCATCCGTTTGCTTTTGGGCATTGA
TACAAAATGGAGGCGGGCGTTCAGCGAAGGAGTTTAGGCGATATGCGGTC
AAACGAGTCAAAGTCAGTCAGTCAGGGTGCTTCCTATCTAGTCCAAGAAG
TCCATGCGACACCAAAATCCATGGAAAGATCCTTCTTTCCTTGTGCATGC
GCGTTTTGACCTCTCCTTGCTGGTGGTCTAGTCTCGATCGTGTCCCGGTT
TTGGTAAATAGTCAGGCATCATCAAGCGAGCACGAAAGTAAGCTCAACTT
CCACAGGCACTTGCTTGCCAAGGCCTCACACACTTCCCCCCTCTTTACAC
AGACAATTCACAGGGCTTTGCTAAATCTGCCGCGAGTTTTATTTTGTCGT
GGTCAGAATGCTAAGCTGTGGACGCTCCGCCTCGCGGCTGGTGATATTGC
GGAAGCCTACCAGCACCTTGGTCTTCAGTCGGGCATGGATCTCGAAAAAT
TTGTCCTTGTGGCTGTACAATCTCATGCTTCCGAGGAGCTTGTCAGGCCA
CAGCGTTCCTGCTTTCAGCCCCATCCTCGTCATGACGATGGCGGGTATAC
CGTAGCCGCGGCGACTGCCACATCCGCACCGGCATCAGAGCATGTATCTG
GGGAGTGCTTTCGATGTCCCAAGTGCTCTAATTATTTAGCTCAAGCCGCT
GATGCCACGGGATCCACCGACGGGACTTTCTTCTGTTCCTCCTGCTCCAT
CTGGGTGTCCTCCACCGGTCAACGCGCTTGTCCTTCCTCGCCGTCACAGC
ACCACTACCAGGATTCGGTGCCGCAGTACACGAAAATCCCCACCCCACCC
TCCTCCCCTTCTTCCACTCCTCCCTCCGGCCCTCCTCCGACCCATCCCGG
CGGACCCCTTTTTCCGGCCGCCAAGCCTGGCACGCCCTCCCCAGGCAGCA
TCTATCCTCCCGGCGCCCCAGACGACCCATTCATGACGCAGCATAGCAGC
AGCAACAGCAGCAACATCGTCGGGGTACCTGCACCTGATACCAACGTGCC
TCCTCAGGTGCGGGACTCACCCCCACCGACGTTCCGTCTCTTGACACCGA
AACAGATCTTTCAAGGTCTAGACGAGTACGTCATTGGACAATCCAGTGTC
AAAATCGCCCTGGCCGTCGGAGTCCACAACCATTATAAGCGTCTCGCTGT
CAGCCGCCCCTCCTCCACCGCCCTCCAGCAACAGCAACAGCAACAGCAAG
CAGCCGCCTTCTCTTCCTTGCAGCAAGATCTAGCTGGAGACATTGATCCC
ACTCTACTCGCCACCCCCGACATGCATATCCCCCCCCCCCCCCCCTCCTG
TGCAGCAGCAGCAGCAGCAGCGGCATCAGCAGCATCCTCACGTCGCCCCC
CCCTCTCCCCTCCGTCGGCGAGGGCCCCGGCAGCTAGAGGGCGAGGGTAA
CGTTAAAAGTATGGATCCTGTCGAGCTTGATAAGACTAACATTCTTCTAA
TTGGTCCAACGGGGAGTGGG back to topprotein sequence of jgi.p|Nanoce1779_2|400250 >mRNA_3190-protein ID=mRNA_3190-protein|Name=jgi.p|Nanoce1779_2|400250|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MEKDREEPEQHHAKITHGGRNQRQKRGRKMKFLVALGLHSNIRRSEARRR
TIGWDMCTYVRLGWSLQAKKRIGRNALTLQRSQFARSCCYFSPSVCFWAL
IQNGGGRSAKEFRRYAVKRVKVSQSGCFLSSPRSPCDTKIHGKILLSLCM
RVLTSPCWWSSLDRVPVLVNSQASSSEHESKLNFHRHLLAKASHTSPLFT
QTIHRALLNLPRVLFCRGQNAKLWTLRLAAGDIAEAYQHLGLQSGMDLEK
FVLVAVQSHASEELVRPQRSCFQPHPRHDDGGYTVAAATATSAPASEHVS
GECFRCPKCSNYLAQAADATGSTDGTFFCSSCSIWVSSTGQRACPSSPSQ
HHYQDSVPQYTKIPTPPSSPSSTPPSGPPPTHPGGPLFPAAKPGTPSPGS
IYPPGAPDDPFMTQHSSSNSSNIVGVPAPDTNVPPQVRDSPPPTFRLLTP
KQIFQGLDEYVIGQSSVKIALAVGVHNHYKRLAVSRPSSTALQQQQQQQQ
AAAFSSLQQDLAGDIDPTLLATPDMHIPPPPPSCAAAAAAAASAASSRRP
PLSPPSARAPAARGRG* back to topmRNA from alignment at scaffold_7:881590..883656+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3190 ID=mRNA_3190|Name=jgi.p|Nanoce1779_2|400250|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp|location=Sequence derived from alignment at scaffold_7:881590..883656+ (Nannochloropsis oceanica)
AAGCCAACGAATAGAACAAGGACGACAACAGCAGGAGCAGCAACAACGGC
AACAACGGCAACCACCAGACGGAGACGGCGCCCCTGTGGATGGAGTGAGA
TGGAGAAAGACAGGGAGGAGCCAGAGCAACATCACGCGAAAATAACACAT
GGTGGAAGAAATCAAAGGCAGAAGAGGGGGAGAAAAATGAAATTTCTCGT
GGCGCTGGGGCTTCACAGTAATATAAGGAGAAGTGAGGCGAGGCGAAGGA
CGATAGGGTGGGATATGTGTACGTACGTGCGTCTGGGTTGGAGCTTACAA
GCGAAGAAAAGAATTGGAAGAAACGCTCTAACATTACAGAGAAGTCAATT
TGCCAGGTCTTGTTGTTACTTCTCTCCATCCGTTTGCTTTTGGGCATTGA
TACAAAATGGAGGCGGGCGTTCAGCGAAGGAGTTTAGGCGATATGCGGTC
AAACGAGTCAAAGTCAGTCAGTCAGGGTGCTTCCTATCTAGTCCAAGAAG
TCCATGCGACACCAAAATCCATGGAAAGATCCTTCTTTCCTTGTGCATGC
GCGTTTTGACCTCTCCTTGCTGGTGGTCTAGTCTCGATCGTGTCCCGGTT
TTGGTAAATAGTCAGGCATCATCAAGCGAGCACGAAAGTAAGCTCAACTT
CCACAGGCACTTGCTTGCCAAGGCCTCACACACTTCCCCCCTCTTTACAC
AGACAATTCACAGGGCTTTGCTAAATCTGCCGCGAGTTTTATTTTGTCGT
GGTCAGAATGCTAAGCTGTGGACGCTCCGCCTCGCGGCTGGTGATATTGC
GGAAGGTACGCATGCACTCATGGATCAAAGCTGGCATTTCCCCCCTCCCG
TGCTTCTCCCACACCCTTCCTATCTCTTCTGTATGCCTATGTGAGCCTTA
TCAAACAATTTATTTACTCCCTCGATATACACTTACAGCCTACCAGCACC
TTGGTCTTCAGTCGGGCATGGATCTCGAAAAATTTGTCCTGCGACAGCAG
CAGCAGCGGCATGGCTAGGCCGACCATCAGGAGTCGCTCCCCAACCTCTG
CTGCTGTGGCTGTACAATCTCATGCTTCCGAGGAGCTTGTCAGGCCACAG
CGTTCCTGCTTTCAGCCCCATCCTCGTCATGACGATGGCGGGTATACCGT
AGCCGCGGCGACTGCCACATCCGCACCGGCATCAGAGCATGTATCTGGGG
AGTGCTTTCGATGTCCCAAGTGCTCTAATTATTTAGCTCAAGCCGCTGAT
GCCACGGGATCCACCGACGGGACTTTCTTCTGTTCCTCCTGCTCCATCTG
GGTGTCCTCCACCGGTCAACGCGCTTGTCCTTCCTCGCCGTCACAGCACC
ACTACCAGGATTCGGTGCCGCAGTACACGAAAATCCCCACCCCACCCTCC
TCCCCTTCTTCCACTCCTCCCTCCGGCCCTCCTCCGACCCATCCCGGCGG
ACCCCTTTTTCCGGCCGCCAAGCCTGGCACGCCCTCCCCAGGCAGCATCT
ATCCTCCCGGCGCCCCAGACGACCCATTCATGACGCAGCATAGCAGCAGC
AACAGCAGCAACATCGTCGGGGTACCTGCACCTGATACCAACGTGCCTCC
TCAGGTGCGGGACTCACCCCCACCGACGTTCCGTCTCTTGACACCGAAAC
AGATCTTTCAAGGTCTAGACGAGTACGTCATTGGACAATCCAGTGTCAAA
ATCGCCCTGGCCGTCGGAGTCCACAACCATTATAAGCGTCTCGCTGTCAG
CCGCCCCTCCTCCACCGCCCTCCAGCAACAGCAACAGCAACAGCAAGCAG
CCGCCTTCTCTTCCTTGCAGCAAGATCTAGCTGGAGACATTGATCCCACT
CTACTCGCCACCCCCGACATGCATATCCCCCCCCCCCCCCCCTCCTGTGC
AGCAGCAGCAGCAGCAGCGGCATCAGCAGCATCCTCACGTCGCCCCCCCC
TCTCCCCTCCGTCGGCGAGGGCCCCGGCAGCTAGAGGGCGAGGGTAACGT
TAAAAGTATGGATCCTGTCGAGCTTGATAAGACTAACATTCTTCTAATTG
GTCCAACGGGGAGTGGG back to topCoding sequence (CDS) from alignment at scaffold_7:881590..883656+ >mRNA_3190 ID=mRNA_3190|Name=jgi.p|Nanoce1779_2|400250|organism=Nannochloropsis oceanica|type=CDS|length=5103bp|location=Sequence derived from alignment at scaffold_7:881590..883656+ (Nannochloropsis oceanica)
ATGGAGAAAGACAGGGAGGAGCCAGAGCAACATCACGCGAAAATAACACA
TGGTGGAAGAAATCAAAGGCAGAAGAGGGGGAGAAAAATGAAATTTCTCG
TGGCGCTGGGGCTTCACAGTAATATAAGGAGAAGTGAGGCGAGGCGAAGG
ACGATAGGGTGGGATATGTGTACGTACGTGCGTCTGGGTTGGAGCTTACA
AGCGAAGAAAAGAATTGGAAGAAACGCTCTAACATTACAGAGAAGTCAAT
TTGCCAGGTCTTGTTGTTACTTCTCTCCATCCGTTTGCTTTTGGGCATTG
ATACAAAATGGAGGCGGGCGTTCAGCGAAGGAGTTTAGGCGATATGCGGT
CAAACGAGTCAAAGTCAGTCAGTCAGGGTGCTTCCTATCTAGTCCAAGAA
GTCCATGCGACACCAAAATCCATGGAAAGATCCTTCTTTCCTTGTGCATG
CGCGTTTTGACCTCTCCTTGCTGGTGGTCTAGTCTCGATCGTGTCCCGGT
TTTGGTAAATAGTCAGGCATCATCAAGCGAGCACGAAAGTAAGCTCAACT
TCCACAGGCACTTGCTTGCCAAGGCCTCACACACTTCCCCCCTCTTTACA
CAGACAATTCACAGGGCTTTGCTAAATCTGCCGCGAGTTTTATTTTGTCG
TGGTCAGAATGCTAAGCTGTGGACGCTCCGCCTCGCGGCTGGTGATATTG
CGGAAGCCTACCAGCACCTTGGTCTTCAGTCGGGCATGGATCTCGAAAAA
TTTGTCCTTGTGGCTGTACAATCTCATGCTTCCGAGGAGCTTGTCAGGCC
ACAGCGTTCCTGCTTTCAGCCCCATCCTCGTCATGACGATGGCGGGTATA
CCGTAGCCGCGGCGACTGCCACATCCGCACCGGCATCAGAGCATGTATCT
GGGGAGTGCTTTCGATGTCCCAAGTGCTCTAATTATTTAGCTCAAGCCGC
TGATGCCACGGGATCCACCGACGGGACTTTCTTCTGTTCCTCCTGCTCCA
TCTGGGTGTCCTCCACCGGTCAACGCGCTTGTCCTTCCTCGCCGTCACAG
CACCACTACCAGGATTCGGTGCCGCAGTACACGAAAATCCCCACCCCACC
CTCCTCCCCTTCTTCCACTCCTCCCTCCGGCCCTCCTCCGACCCATCCCG
GCGGACCCCTTTTTCCGGCCGCCAAGCCTGGCACGCCCTCCCCAGGCAGC
ATCTATCCTCCCGGCGCCCCAGACGACCCATTCATGACGCAGCATAGCAG
CAGCAACAGCAGCAACATCGTCGGGGTACCTGCACCTGATACCAACGTGC
CTCCTCAGGTGCGGGACTCACCCCCACCGACGTTCCGTCTCTTGACACCG
AAACAGATCTTTCAAGGTCTAGACGAGTACGTCATTGGACAATCCAGTGT
CAAAATCGCCCTGGCCGTCGGAGTCCACAACCATTATAAGCGTCTCGCTG
TCAGCCGCCCCTCCTCCACCGCCCTCCAGCAACAGCAACAGCAACAGCAA
GCAGCCGCCTTCTCTTCCTTGCAGCAAGATCTAGCTGGAGACATTGATCC
CACTCTACTCGCCACCCCCGACATGCATATCCCCCCCCCCCCCCCCTCCT
GTGCAGCAGCAGCAGCAGCAGCGGCATCAGCAGCATCCTCACGTCGCCCC
CCCCTCTCCCCTCCGTCGGCGAGGGCCCCGGCAGCTAGAGGGCGAGGGTA
AATGGAGAAAGACAGGGAGGAGCCAGAGCAACATCACGCGAAAATAACAC
ATGGTGGAAGAAATCAAAGGCAGAAGAGGGGGAGAAAAATGAAATTTCTC
GTGGCGCTGGGGCTTCACAGTAATATAAGGAGAAGTGAGGCGAGGCGAAG
GACGATAGGGTGGGATATGTGTACGTACGTGCGTCTGGGTTGGAGCTTAC
AAGCGAAGAAAAGAATTGGAAGAAACGCTCTAACATTACAGAGAAGTCAA
TTTGCCAGGTCTTGTTGTTACTTCTCTCCATCCGTTTGCTTTTGGGCATT
GATACAAAATGGAGGCGGGCGTTCAGCGAAGGAGTTTAGGCGATATGCGG
TCAAACGAGTCAAAGTCAGTCAGTCAGGGTGCTTCCTATCTAGTCCAAGA
AGTCCATGCGACACCAAAATCCATGGAAAGATCCTTCTTTCCTTGTGCAT
GCGCGTTTTGACCTCTCCTTGCTGGTGGTCTAGTCTCGATCGTGTCCCGG
TTTTGGTAAATAGTCAGGCATCATCAAGCGAGCACGAAAGTAAGCTCAAC
TTCCACAGGCACTTGCTTGCCAAGGCCTCACACACTTCCCCCCTCTTTAC
ACAGACAATTCACAGGGCTTTGCTAAATCTGCCGCGAGTTTTATTTTGTC
GTGGTCAGAATGCTAAGCTGTGGACGCTCCGCCTCGCGGCTGGTGATATT
GCGGAAGCCTACCAGCACCTTGGTCTTCAGTCGGGCATGGATCTCGAAAA
ATTTGTCCTTGTGGCTGTACAATCTCATGCTTCCGAGGAGCTTGTCAGGC
CACAGCGTTCCTGCTTTCAGCCCCATCCTCGTCATGACGATGGCGGGTAT
ACCGTAGCCGCGGCGACTGCCACATCCGCACCGGCATCAGAGCATGTATC
TGGGGAGTGCTTTCGATGTCCCAAGTGCTCTAATTATTTAGCTCAAGCCG
CTGATGCCACGGGATCCACCGACGGGACTTTCTTCTGTTCCTCCTGCTCC
ATCTGGGTGTCCTCCACCGGTCAACGCGCTTGTCCTTCCTCGCCGTCACA
GCACCACTACCAGGATTCGGTGCCGCAGTACACGAAAATCCCCACCCCAC
CCTCCTCCCCTTCTTCCACTCCTCCCTCCGGCCCTCCTCCGACCCATCCC
GGCGGACCCCTTTTTCCGGCCGCCAAGCCTGGCACGCCCTCCCCAGGCAG
CATCTATCCTCCCGGCGCCCCAGACGACCCATTCATGACGCAGCATAGCA
GCAGCAACAGCAGCAACATCGTCGGGGTACCTGCACCTGATACCAACGTG
CCTCCTCAGGTGCGGGACTCACCCCCACCGACGTTCCGTCTCTTGACACC
GAAACAGATCTTTCAAGGTCTAGACGAGTACGTCATTGGACAATCCAGTG
TCAAAATCGCCCTGGCCGTCGGAGTCCACAACCATTATAAGCGTCTCGCT
GTCAGCCGCCCCTCCTCCACCGCCCTCCAGCAACAGCAACAGCAACAGCA
AGCAGCCGCCTTCTCTTCCTTGCAGCAAGATCTAGCTGGAGACATTGATC
CCACTCTACTCGCCACCCCCGACATGCATATCCCCCCCCCCCCCCCCTCC
TGTGCAGCAGCAGCAGCAGCAGCGGCATCAGCAGCATCCTCACGTCGCCC
CCCCCTCTCCCCTCCGTCGGCGAGGGCCCCGGCAGCTAGAGGGCGAGGGT
AAATGGAGAAAGACAGGGAGGAGCCAGAGCAACATCACGCGAAAATAACA
CATGGTGGAAGAAATCAAAGGCAGAAGAGGGGGAGAAAAATGAAATTTCT
CGTGGCGCTGGGGCTTCACAGTAATATAAGGAGAAGTGAGGCGAGGCGAA
GGACGATAGGGTGGGATATGTGTACGTACGTGCGTCTGGGTTGGAGCTTA
CAAGCGAAGAAAAGAATTGGAAGAAACGCTCTAACATTACAGAGAAGTCA
ATTTGCCAGGTCTTGTTGTTACTTCTCTCCATCCGTTTGCTTTTGGGCAT
TGATACAAAATGGAGGCGGGCGTTCAGCGAAGGAGTTTAGGCGATATGCG
GTCAAACGAGTCAAAGTCAGTCAGTCAGGGTGCTTCCTATCTAGTCCAAG
AAGTCCATGCGACACCAAAATCCATGGAAAGATCCTTCTTTCCTTGTGCA
TGCGCGTTTTGACCTCTCCTTGCTGGTGGTCTAGTCTCGATCGTGTCCCG
GTTTTGGTAAATAGTCAGGCATCATCAAGCGAGCACGAAAGTAAGCTCAA
CTTCCACAGGCACTTGCTTGCCAAGGCCTCACACACTTCCCCCCTCTTTA
CACAGACAATTCACAGGGCTTTGCTAAATCTGCCGCGAGTTTTATTTTGT
CGTGGTCAGAATGCTAAGCTGTGGACGCTCCGCCTCGCGGCTGGTGATAT
TGCGGAAGCCTACCAGCACCTTGGTCTTCAGTCGGGCATGGATCTCGAAA
AATTTGTCCTTGTGGCTGTACAATCTCATGCTTCCGAGGAGCTTGTCAGG
CCACAGCGTTCCTGCTTTCAGCCCCATCCTCGTCATGACGATGGCGGGTA
TACCGTAGCCGCGGCGACTGCCACATCCGCACCGGCATCAGAGCATGTAT
CTGGGGAGTGCTTTCGATGTCCCAAGTGCTCTAATTATTTAGCTCAAGCC
GCTGATGCCACGGGATCCACCGACGGGACTTTCTTCTGTTCCTCCTGCTC
CATCTGGGTGTCCTCCACCGGTCAACGCGCTTGTCCTTCCTCGCCGTCAC
AGCACCACTACCAGGATTCGGTGCCGCAGTACACGAAAATCCCCACCCCA
CCCTCCTCCCCTTCTTCCACTCCTCCCTCCGGCCCTCCTCCGACCCATCC
CGGCGGACCCCTTTTTCCGGCCGCCAAGCCTGGCACGCCCTCCCCAGGCA
GCATCTATCCTCCCGGCGCCCCAGACGACCCATTCATGACGCAGCATAGC
AGCAGCAACAGCAGCAACATCGTCGGGGTACCTGCACCTGATACCAACGT
GCCTCCTCAGGTGCGGGACTCACCCCCACCGACGTTCCGTCTCTTGACAC
CGAAACAGATCTTTCAAGGTCTAGACGAGTACGTCATTGGACAATCCAGT
GTCAAAATCGCCCTGGCCGTCGGAGTCCACAACCATTATAAGCGTCTCGC
TGTCAGCCGCCCCTCCTCCACCGCCCTCCAGCAACAGCAACAGCAACAGC
AAGCAGCCGCCTTCTCTTCCTTGCAGCAAGATCTAGCTGGAGACATTGAT
CCCACTCTACTCGCCACCCCCGACATGCATATCCCCCCCCCCCCCCCCTC
CTGTGCAGCAGCAGCAGCAGCAGCGGCATCAGCAGCATCCTCACGTCGCC
CCCCCCTCTCCCCTCCGTCGGCGAGGGCCCCGGCAGCTAGAGGGCGAGGG
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