jgi.p|Nanoce1779_2|584875, mRNA_3189 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584875
Unique Name	mRNA_3189
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	893
Alignment location	scaffold_7:880268..881926 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584961
Track	FilteredModels2
ProteinId	584875

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:880268..881926 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584875	gene_3189	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584875	mRNA_3189-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3189	CDS_3189	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:880268..881926+
coding sequence from alignment at scaffold_7:880268..881926+

mRNA sequence

>mRNA_3189 ID=mRNA_3189|Name=jgi.p|Nanoce1779_2|584875|organism=Nannochloropsis oceanica|type=mRNA|length=893bp
AAAACCTCAGGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTT
GCAGCACCAGACGCTTAACCCTTCTCTGAGCAGTCGGGAATTTCAAAAAC
AATACCAGCAGTACCTATATCAGACAGCAGCCATGCCCAAGAACAAGGGA
AAGGGCGGCAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAA
GCGCGACCTGCTCTTCAAGGAGGAAGGCCAAGAGTACGGACAAGTACTAC
GTATGTTAGGCAATGGGCGATGCGAGGTGTATTGCTTTGATGGGAAGAAT
CGCCTGGCGCACATTCGAGGGAAGATGCGCAAGAAGGTGTGGGTATCAGC
GGGTGATATTGTACTGCTGGGCATGCGGGACTACCAGGAGGACAAGGTGG
ACATCATTCACAAGTACAACGCGGACGAGGCCCGGAACCTCAAGGCATTC
GGTGAACTCCCAGAGACAGCCAAGATCAATGAGACGGCAATAGACTTGAC
AATGGAAGGCGGCTCCGACTCGGAGGACGAGATTGGCGTGGACTTTGACG
AGATCTAAGCCAACGAATAGAACAAGGACGACAACAGCAGGAGCAGCAAC
AACGGCAACAACGGCAACCACCAGACGGAGACGGCGCCCCTGTGGATGGA
GTGAGATGGAGAAAGACAGGGAGGAGCCAGAGCAACATCACGCGAAAATA
ACACATGGTGGAAGAAATCAAAGGCAGAAGAGGGGGAGAAAAATGAAATT
TCTCGTGGCGCTGGGGCTTCACAGTAATATAAGGAGAAGTGAGGCGAGGC
GAAGGACGATAGGGTGGGATATGTGTACGTACGTGCGTCTGGGTTGGAGC
TTACAAGCGAAGAAAAGAATTGGAAGAAACGCTCTAACATTAC

protein sequence of jgi.p|Nanoce1779_2|584875

>mRNA_3189-protein ID=mRNA_3189-protein|Name=jgi.p|Nanoce1779_2|584875|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVLRMLGNGRCEVY
CFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEA
RNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI*

mRNA from alignment at scaffold_7:880268..881926+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3189 ID=mRNA_3189|Name=jgi.p|Nanoce1779_2|584875|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp|location=Sequence derived from alignment at scaffold_7:880268..881926+ (Nannochloropsis oceanica)
AAAACCTCAGGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTT
GCAGCACCAGACGCTTAACCCTTCTCTGAGCAGGTAAGTCACTTGGTGGA
TGGCACAGCTAGGTGGCTGAGATGTTGTGTCTCGTGTTTCCCCCGTCCTG
CTAGTCACAAGCGATGCGCGTCGTGGACTGTGGCCATCCCTCCCTCACTC
TCTCACCGCTTTCTCCACCCTATCCTTATAATCATACAGTCGGGAATTTC
AAAAACAATACCAGCAGTACCTATATCAGACAGCAGCCATGCCCAAGAAC
AAGGGAAAGGGCGGCAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGA
GACAAAGCGCGACCTGCTCTTCAAGGAGGAAGGCCAAGGTCCGTGGGAGC
GCGCAGTGCTCGCAGACAACAGAGGGGAGACGAAAGGAAAAGGAAAGGGG
AGATAGTGATCACGTGAAAGTAGAATCTGGTTCTGCCCTTGGAATTGTGA
CAGACCCTTCCCGTCCTCTTCCCTCCCCTTCCTTCTCCTCCTTCTCCCGA
AAATAGAGTACGGACAAGTACTACGTATGTTAGGCAATGGGCGATGCGAG
GTGTATTGCTTTGATGGGAAGAATCGCCTGGCGCACATTCGAGGGAAGAT
GCGCAAGAAGGTGTGGGTATCAGCGGTGAGTATTTGGCGGCGTCCTGTTT
GGTTGGAAGGGGTGGAGTGATTGAGGTAGATGGGGGGGAAAGTCAGGGAT
GTTATTGTCAACTCTGCCGGAAGATTTTTTTCTCTCAATATGTCCCTCCG
CCTTTCTGTTGTACTCCTTTGCTGTATCACAGGGTGATATTGTACTGCTG
GGCATGCGGGACTACCAGGAGGACAAGGTGGACATCATTCACAAGTACAA
CGCGGACGAGGCCCGGAACCTCAAGGCATTCGGTGAACTCCCAGAGACAG
GTACGTGTCTTTTATTTTTAATGTCTGGATTGGATTTCTGTGTGTTATCT
TTAGGTGATGGGCAAAGGAAGGCGTGGTTTCAGGCACTCATTACCAGTAC
TCGTCCTCCTTCCTTCCTCTCTCCCTCCCCCCTTCTGCTTTTCTAACAGC
CAAGATCAATGAGACGGCAATAGACTTGACAATGGAAGGCGGCTCCGACT
CGGAGGACGAGATTGGCGTGGACTTTGACGAGGTTCGTTCCATGTCCTTT
TCCCATCCTGTTGAGTTTTTCCCCTACTCTCTTGTTATTGTGGTGACGAA
ACTGGATAAATTTGATTTCGAGAATTTCTCGTTCTTACTGGCTCCATTCT
TTTGTATGAAACGCACAGATCTAAGCCAACGAATAGAACAAGGACGACAA
CAGCAGGAGCAGCAACAACGGCAACAACGGCAACCACCAGACGGAGACGG
CGCCCCTGTGGATGGAGTGAGATGGAGAAAGACAGGGAGGAGCCAGAGCA
ACATCACGCGAAAATAACACATGGTGGAAGAAATCAAAGGCAGAAGAGGG
GGAGAAAAATGAAATTTCTCGTGGCGCTGGGGCTTCACAGTAATATAAGG
AGAAGTGAGGCGAGGCGAAGGACGATAGGGTGGGATATGTGTACGTACGT
GCGTCTGGGTTGGAGCTTACAAGCGAAGAAAAGAATTGGAAGAAACGCTC
TAACATTAC

Coding sequence (CDS) from alignment at scaffold_7:880268..881926+

>mRNA_3189 ID=mRNA_3189|Name=jgi.p|Nanoce1779_2|584875|organism=Nannochloropsis oceanica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_7:880268..881926+ (Nannochloropsis oceanica)
ATGCCCAAGAACAAGGGAAAGGGCGGCAAAAATCGGCGTCGAGGGAAGAA
CGAGAATGAGGAGACAAAGCGCGACCTGCTCTTCAAGGAGGAAGGCCAAG
AGTACGGACAAGTACTACGTATGTTAGGCAATGGGCGATGCGAGGTGTAT
TGCTTTGATGGGAAGAATCGCCTGGCGCACATTCGAGGGAAGATGCGCAA
GAAGGTGTGGGTATCAGCGGGTGATATTGTACTGCTGGGCATGCGGGACT
ACCAGGAGGACAAGGTGGACATCATTCACAAGTACAACGCGGACGAGGCC
CGGAACCTCAAGGCATTCGGTGAACTCCCAGAGACAGCCAAGATCAATGA
GACGGCAATAGACTTGACAATGGAAGGCGGCTCCGACTCGGAGGACGAGA
TTGGCGTGGACTTTGACGAGATCTAAATGCCCAAGAACAAGGGAAAGGGC
GGCAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAGCGCGA
CCTGCTCTTCAAGGAGGAAGGCCAAGAGTACGGACAAGTACTACGTATGT
TAGGCAATGGGCGATGCGAGGTGTATTGCTTTGATGGGAAGAATCGCCTG
GCGCACATTCGAGGGAAGATGCGCAAGAAGGTGTGGGTATCAGCGGGTGA
TATTGTACTGCTGGGCATGCGGGACTACCAGGAGGACAAGGTGGACATCA
TTCACAAGTACAACGCGGACGAGGCCCGGAACCTCAAGGCATTCGGTGAA
CTCCCAGAGACAGCCAAGATCAATGAGACGGCAATAGACTTGACAATGGA
AGGCGGCTCCGACTCGGAGGACGAGATTGGCGTGGACTTTGACGAGATCT
AAATGCCCAAGAACAAGGGAAAGGGCGGCAAAAATCGGCGTCGAGGGAAG
AACGAGAATGAGGAGACAAAGCGCGACCTGCTCTTCAAGGAGGAAGGCCA
AGAGTACGGACAAGTACTACGTATGTTAGGCAATGGGCGATGCGAGGTGT
ATTGCTTTGATGGGAAGAATCGCCTGGCGCACATTCGAGGGAAGATGCGC
AAGAAGGTGTGGGTATCAGCGGGTGATATTGTACTGCTGGGCATGCGGGA
CTACCAGGAGGACAAGGTGGACATCATTCACAAGTACAACGCGGACGAGG
CCCGGAACCTCAAGGCATTCGGTGAACTCCCAGAGACAGCCAAGATCAAT
GAGACGGCAATAGACTTGACAATGGAAGGCGGCTCCGACTCGGAGGACGA
GATTGGCGTGGACTTTGACGAGATCTAAATGCCCAAGAACAAGGGAAAGG
GCGGCAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAGCGC
GACCTGCTCTTCAAGGAGGAAGGCCAAGAGTACGGACAAGTACTACGTAT
GTTAGGCAATGGGCGATGCGAGGTGTATTGCTTTGATGGGAAGAATCGCC
TGGCGCACATTCGAGGGAAGATGCGCAAGAAGGTGTGGGTATCAGCGGGT
GATATTGTACTGCTGGGCATGCGGGACTACCAGGAGGACAAGGTGGACAT
CATTCACAAGTACAACGCGGACGAGGCCCGGAACCTCAAGGCATTCGGTG
AACTCCCAGAGACAGCCAAGATCAATGAGACGGCAATAGACTTGACAATG
GAAGGCGGCTCCGACTCGGAGGACGAGATTGGCGTGGACTTTGACGAGAT
CTAAATGCCCAAGAACAAGGGAAAGGGCGGCAAAAATCGGCGTCGAGGGA
AGAACGAGAATGAGGAGACAAAGCGCGACCTGCTCTTCAAGGAGGAAGGC
CAAGAGTACGGACAAGTACTACGTATGTTAGGCAATGGGCGATGCGAGGT
GTATTGCTTTGATGGGAAGAATCGCCTGGCGCACATTCGAGGGAAGATGC
GCAAGAAGGTGTGGGTATCAGCGGGTGATATTGTACTGCTGGGCATGCGG
GACTACCAGGAGGACAAGGTGGACATCATTCACAAGTACAACGCGGACGA
GGCCCGGAACCTCAAGGCATTCGGTGAACTCCCAGAGACAGCCAAGATCA
ATGAGACGGCAATAGACTTGACAATGGAAGGCGGCTCCGACTCGGAGGAC
GAGATTGGCGTGGACTTTGACGAGATCTAA

Synonyms

Publications