jgi.p|Nanoce1779_2|584873, mRNA_3188 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584873
Unique NamemRNA_3188
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length789
Alignment locationscaffold_7:879060..879968 -

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Properties
Property NameValue
TranscriptId584959
TrackFilteredModels2
ProteinId584873
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:879060..879968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584873gene_3188Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584873mRNA_3188-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3188CDS_3188Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3188 ID=mRNA_3188|Name=jgi.p|Nanoce1779_2|584873|organism=Nannochloropsis oceanica|type=mRNA|length=789bp
ACAGGCCGTAGGTCGTCATGCTCTTGAGACGGCTTGTTCAACGAGGGACG
AGTGCTGTCTCGTCGTCCTCGTCTAGCACAAGGGCCGCTATGTCGACTTC
AGCCCTCGCGCTATCTTCTTGCGGCTGGCGAAGCATCACCACGGCATCAT
CCCCGCCACCACAACCACAACAATCACGATCCGTGCCCCGCCGTTCCTTT
TCCTTCTCTGTCGCCGACTCCACTGCCACCGCTGCAACCAGCATGCCAAG
AACCTCTCCTCCCGCGTCCATGGACCAGGCACCGCCGGCAGGGCCTGTTC
ACACCCGCGTTCTTCATCCGACGGGCAAAGGGGAAGGCGAGGCATATGGT
CGTCTCCCTGTCGACGTTGAAGCGCTGGCAGCGGAGGGGCTAGAAGCTAG
GTTTGTGGTGATTGACCTGAAAGGCAAGCAGTACAAGGTGACAAAAGATG
ACGTAATTGTCTCCGATAAGATCGAGGGGTTGGAGCCGGGTTATATTTTT
GAGTGTGCGGAAGTGCATTTGGTGGGGACGCCAGAGTACACAATTGTTGG
TCGGCCGTATGTGCAGAATGCGCGTGTAAGACTACAGGTGGAGGAGCAAG
CGAAGGATGCCAAAATCATCGTTTTTAAGAAAAAGCGGAGGAAAAACTAT
AGGCGGAAGCAGGGGTTTAGAAGGGAGGTGACCATTTTGAGGGTTTTGGA
AATTGAGGAGTAGTGGGGAGGAAGGAGGGAGGGAGAGAGGGAGGGAGGGA
GGAGAGGGGCACTGAGAGGGGTGGGTGTCTTAACAAGAG
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protein sequence of jgi.p|Nanoce1779_2|584873

>mRNA_3188-protein ID=mRNA_3188-protein|Name=jgi.p|Nanoce1779_2|584873|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MLLRRLVQRGTSAVSSSSSSTRAAMSTSALALSSCGWRSITTASSPPPQP
QQSRSVPRRSFSFSVADSTATAATSMPRTSPPASMDQAPPAGPVHTRVLH
PTGKGEGEAYGRLPVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSD
KIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKI
IVFKKKRRKNYRRKQGFRREVTILRVLEIEE*
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mRNA from alignment at scaffold_7:879060..879968-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3188 ID=mRNA_3188|Name=jgi.p|Nanoce1779_2|584873|organism=Nannochloropsis oceanica|type=mRNA|length=909bp|location=Sequence derived from alignment at scaffold_7:879060..879968- (Nannochloropsis oceanica)
ACAGGCCGTAGGTCGTCATGCTCTTGAGACGGCTTGTTCAACGAGGGACG
AGTGCTGTCTCGTCGTCCTCGTCTAGCACAAGGGCCGCTATGTCGACTTC
AGCCCTCGCGCTATCTTCTTGCGGCTGGCGAAGCATCACCACGGCATCAT
CCCCGCCACCACAACCACAACAATCACGATCCGTGCCCCGCCGTTCCTTT
TCCTTCTCTGTCGCCGACTCCACTGCCACCGCTGCAACCAGCATGCCAAG
AACCTCTCCTCCCGCGTCCATGGACCAGGCACCGCCGGCAGGGGTATGTG
TGATGAAGGGCAAATGAGTGCATTATGTACTGAAACTGCCTTTTTATGTT
CTCTCCATCCTCCCTCTCAGATATTTATCACAAAACACTCTCTCCATCGA
TCTCTTTTCACAGCCTGTTCACACCCGCGTTCTTCATCCGACGGGCAAAG
GGGAAGGCGAGGCATATGGTCGTCTCCCTGTCGACGTTGAAGCGCTGGCA
GCGGAGGGGCTAGAAGCTAGGTTTGTGGTGATTGACCTGAAAGGCAAGCA
GTACAAGGTGACAAAAGATGACGTAATTGTCTCCGATAAGATCGAGGGGT
TGGAGCCGGGTTATATTTTTGAGTGTGCGGAAGTGCATTTGGTGGGGACG
CCAGAGTACACAATTGTTGGTCGGCCGTATGTGCAGAATGCGCGTGTAAG
ACTACAGGTGGAGGAGCAAGCGAAGGATGCCAAAATCATCGTTTTTAAGA
AAAAGCGGAGGAAAAACTATAGGCGGAAGCAGGGGTTTAGAAGGGAGGTG
ACCATTTTGAGGGTTTTGGAAATTGAGGAGTAGTGGGGAGGAAGGAGGGA
GGGAGAGAGGGAGGGAGGGAGGAGAGGGGCACTGAGAGGGGTGGGTGTCT
TAACAAGAG
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Coding sequence (CDS) from alignment at scaffold_7:879060..879968-

>mRNA_3188 ID=mRNA_3188|Name=jgi.p|Nanoce1779_2|584873|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_7:879060..879968- (Nannochloropsis oceanica)
CCTGTTCACACCCGCGTTCTTCATCCGACGGGCAAAGGGGAAGGCGAGGC
ATATGGTCGTCTCCCTGTCGACGTTGAAGCGCTGGCAGCGGAGGGGCTAG
AAGCTAGGTTTGTGGTGATTGACCTGAAAGGCAAGCAGTACAAGGTGACA
AAAGATGACGTAATTGTCTCCGATAAGATCGAGGGGTTGGAGCCGGGTTA
TATTTTTGAGTGTGCGGAAGTGCATTTGGTGGGGACGCCAGAGTACACAA
TTGTTGGTCGGCCGTATGTGCAGAATGCGCGTGTAAGACTACAGGTGGAG
GAGCAAGCGAAGGATGCCAAAATCATCGTTTTTAAGAAAAAGCGGAGGAA
AAACTATAGGCGGAAGCAGGGGTTTAGAAGGGAGGTGACCATTTTGAGGG
TTTTGGAAATTGAGGAGTAGATGCTCTTGAGACGGCTTGTTCAACGAGGG
ACGAGTGCTGTCTCGTCGTCCTCGTCTAGCACAAGGGCCGCTATGTCGAC
TTCAGCCCTCGCGCTATCTTCTTGCGGCTGGCGAAGCATCACCACGGCAT
CATCCCCGCCACCACAACCACAACAATCACGATCCGTGCCCCGCCGTTCC
TTTTCCTTCTCTGTCGCCGACTCCACTGCCACCGCTGCAACCAGCATGCC
AAGAACCTCTCCTCCCGCGTCCATGGACCAGGCACCGCCGGCAGGGCCTG
TTCACACCCGCGTTCTTCATCCGACGGGCAAAGGGGAAGGCGAGGCATAT
GGTCGTCTCCCTGTCGACGTTGAAGCGCTGGCAGCGGAGGGGCTAGAAGC
TAGGTTTGTGGTGATTGACCTGAAAGGCAAGCAGTACAAGGTGACAAAAG
ATGACGTAATTGTCTCCGATAAGATCGAGGGGTTGGAGCCGGGTTATATT
TTTGAGTGTGCGGAAGTGCATTTGGTGGGGACGCCAGAGTACACAATTGT
TGGTCGGCCGTATGTGCAGAATGCGCGTGTAAGACTACAGGTGGAGGAGC
AAGCGAAGGATGCCAAAATCATCGTTTTTAAGAAAAAGCGGAGGAAAAAC
TATAGGCGGAAGCAGGGGTTTAGAAGGGAGGTGACCATTTTGAGGGTTTT
GGAAATTGAGGAGTAGATGCTCTTGAGACGGCTTGTTCAACGAGGGACGA
GTGCTGTCTCGTCGTCCTCGTCTAGCACAAGGGCCGCTATGTCGACTTCA
GCCCTCGCGCTATCTTCTTGCGGCTGGCGAAGCATCACCACGGCATCATC
CCCGCCACCACAACCACAACAATCACGATCCGTGCCCCGCCGTTCCTTTT
CCTTCTCTGTCGCCGACTCCACTGCCACCGCTGCAACCAGCATGCCAAGA
ACCTCTCCTCCCGCGTCCATGGACCAGGCACCGCCGGCAGGG
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Synonyms
Publications