Properties
| Property Name | Value |
|---|
| TranscriptId | 638393 |
| Track | FilteredModels2 |
| ProteinId | 638307 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:875141..877226 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3186 ID=mRNA_3186|Name=jgi.p|Nanoce1779_2|638307|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
ATGCACGCGGCGTCTGCGGGCAAGCAGAACGGTCCTCCTACGTCGGCCTC
TTCCTCGGAGCGGGCGATGATCCGCTTTTTTCAAATTAAAGTCGAGTCGG
GATGTTTCTCAGTGCTAGCCATGGTATCAGGCTTCCTCTCCCAGACGCCC
ACCGGGTCCACCGTCGCCTACGCTGCCGCTGCCGCCGAGGACAGAAACAT
GGACGCGTTGCTCGGCCGCCTCCTGACGCCGCTCATTTCGAAAAAACGAG
GTCAGCAGGCAAGAAATGATGGGCAGGAGTATGATGATGACGACGACGAC
CGTTCGGACGAGATTTATTCGGCATGGTTTGCAGGGCTGTTGGTTTTACC
CGTCGGCGTCCTCTACTCGGTCGTGCTCCTATTTCTCGGCACGTACAGCC
ACTGGTTTGTCGCCTGTCGGCGGCATATCAGACGTTTTACAAGCCATCTT
CTTTCCTGGTGGCAGGCCTTTCGTGTCTTGGCTTTTTCTAGCAACCAGGA
TGGTCTGGAGCTCCCGCCATTTCTGCCGCGTGAGACCTCTATCGGCGCAA
ACAGCAAGGCCGGCCTGTATTGGTGCGGGTTGGGGGATGTGTGCGAACGC
GACGACCACGTGTTCTCTTCATCACTCTTTGACTCCAGCAAGCCGACCGT
AATTTATGTGCATGGATATCAACCAAGGACGATAATAAGAAACTTTCGTG
AGTCACTCAATTGGAACGACAATGATGACGAGTACGGCTTGGACATGAAC
GCTGCAGATCACTGGCTGAAGGCTGGTTGGAACGTAGGCGTATTTTATTG
GGCAAGTTATGCAGATGAGGACTATGTGCATGATGCAGAAGCAAAGATTT
GGTCGAATGCCACCCGAGTTGGAATGCGCTATCGTCTGTTGACTCAATGT
GGCACGAGGGTTAAGTGGCGTTACGTCTCTTCATCAGTTCCCTGCGCGTC
TGAACAGCTGGCAGCAGTGTTACAGCGGAGATTTTCGCCAGGTACAGCGA
GTTACCGGTTGGTTGGGCATAGTTTAGGGGCGCAAGTGGTAATTCACACG
GCAACGTTGTTGGCGCAGGCAAAGCGGAAGGGACTGGAGAAATACGGAAC
GGCTGAAGAGATAAAAGGGAGTGAGATTGATGGCAATTCTGCGCAAGACA
ATTCCATGGCGGTTGACTTTATCTCTAGCACCAGCAGCAGTAATCCTGCC
TGCTCCTCGTCGTCGTCGTCCCCCTCCCCTCCCACCACACTCCAAGCCTC
CTCCATGCTCCCCTCTCGCATTGCCCTCCTCGATGCCTTCTTCACTTTGG
AACCCAAAAGCTATCTTGGCTGGCGTTCCCTCGCCAGTGTTCTGAAGGAA
GAAATCACAGCTTTGGCTCAGGAGGAGGACGTGGTGTTTGAACAGTACCA
GACGTCTCTCCTCTCATTTGCAGCAAGCTTGCACCTGAAGCCTCTGACGG
CATTTTTCGATGTAGATCCCAAGCATATCCCGTGGTGGAAGCTGCGGGCT
CGGCATGTGTGTGCGCCATATCTGTATTTTCATTCGATGGCCTCGCAGGA
GGTGGGAAGAAGGGTGGTGAAAGAGGTGGGGGGTGCGTGGACGGATTTCT
GGGGGGAGGTCCTTAGCCAGGATGTGTTGGAGGACGAGGATTCGTTTCGT
GGAATGGCGAAGACCCCGGACGCGCACTTGCGTCTGTTGATACAGGCGTG
TGGAAGTGGGGGGTTGTGGGAGCATATGTATGTGCATGTAACTTGCCGGT
TGTTGATGTGGCGGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|638307 >mRNA_3186-protein ID=mRNA_3186-protein|Name=jgi.p|Nanoce1779_2|638307|organism=Nannochloropsis oceanica|type=polypeptide|length=589bp
MHAASAGKQNGPPTSASSSERAMIRFFQIKVESGCFSVLAMVSGFLSQTP
TGSTVAYAAAAAEDRNMDALLGRLLTPLISKKRGQQARNDGQEYDDDDDD
RSDEIYSAWFAGLLVLPVGVLYSVVLLFLGTYSHWFVACRRHIRRFTSHL
LSWWQAFRVLAFSSNQDGLELPPFLPRETSIGANSKAGLYWCGLGDVCER
DDHVFSSSLFDSSKPTVIYVHGYQPRTIIRNFRESLNWNDNDDEYGLDMN
AADHWLKAGWNVGVFYWASYADEDYVHDAEAKIWSNATRVGMRYRLLTQC
GTRVKWRYVSSSVPCASEQLAAVLQRRFSPGTASYRLVGHSLGAQVVIHT
ATLLAQAKRKGLEKYGTAEEIKGSEIDGNSAQDNSMAVDFISSTSSSNPA
CSSSSSSPSPPTTLQASSMLPSRIALLDAFFTLEPKSYLGWRSLASVLKE
EITALAQEEDVVFEQYQTSLLSFAASLHLKPLTAFFDVDPKHIPWWKLRA
RHVCAPYLYFHSMASQEVGRRVVKEVGGAWTDFWGEVLSQDVLEDEDSFR
GMAKTPDAHLRLLIQACGSGGLWEHMYVHVTCRLLMWR* back to topmRNA from alignment at scaffold_7:875141..877226- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3186 ID=mRNA_3186|Name=jgi.p|Nanoce1779_2|638307|organism=Nannochloropsis oceanica|type=mRNA|length=2086bp|location=Sequence derived from alignment at scaffold_7:875141..877226- (Nannochloropsis oceanica)
ATGCACGCGGCGTCTGCGGGCAAGCAGAACGGTCCTCCTACGTCGGCCTC
TTCCTCGGAGCGGGCGATGATCCGCTTTTTTCAAATTAAAGTCGAGTCGG
GATGTTTCTCGTACACGCGAGAACTCAGGAACGTTCTTCGCATGGCGGCG
TCTGCTGCAGTTTGTACTCGTTGGGCTCATATTTGCGCTGCTTGTATTTC
TTGGTGGGTGGTCTTGCTTACCAGCTCGTCAGAGTGCTGGCGTAAAGGCT
AGTATTTTGACACTGATGGCCTTGGTCGGGCATGAAGTCGTGATTGCACA
CGACATTTACGCAGGCACACTCTCTCCTCGATCTTAGTGTGGAATGTAGT
ATGCTGGCCTCCCAAACATTAACCAAAGCGCTTTCTATCCTCACACCCTT
CCCGCTCCCAACTCCAACACACACTACAGAGTGCTAGCCATGGTATCAGG
CTTCCTCTCCCAGACGCCCACCGGGTCCACCGTCGCCTACGCTGCCGCTG
CCGCCGAGGACAGAAACATGGACGCGTTGCTCGGCCGCCTCCTGACGCCG
CTCATTTCGAAAAAACGAGGTCAGCAGGCAAGAAATGATGGGCAGGAGTA
TGATGATGACGACGACGACCGTTCGGACGAGATTTATTCGGCATGGTTTG
CAGGGCTGTTGGTTTTACCCGTCGGCGTCCTCTACTCGGTCGTGCTCCTA
TTTCTCGGCACGTACAGCCACTGGTTTGTCGCCTGTCGGCGGCATATCAG
ACGTTTTACAAGCCATCTTCTTTCCTGGTGGCAGGCCTTTCGTGTCTTGG
CTTTTTCTAGCAACCAGGATGGTCTGGAGCTCCCGCCATTTCTGCCGCGT
GAGACCTCTATCGGCGCAAACAGCAAGGCCGGCCTGTATTGGTGCGGGTT
GGGGGATGTGTGCGAACGCGACGACCACGTGTTCTCTTCATCACTCTTTG
ACTCCAGCAAGCCGACCGTAATTTATGTGCATGGATATCAACCAAGGACG
ATAATAAGAAACTTTCGTGAGTCACTCAATTGGAACGACAATGATGACGA
GTACGGCTTGGACATGAACGCTGCAGATCACTGGCTGAAGGCTGGTTGGA
ACGTAGGCGTATTTTATTGGGCAAGTTATGCAGATGAGGACTATGTGCAT
GATGCAGAAGCAAAGATTTGGTCGAATGCCACCCGAGTTGGAATGCGCTA
TCGTCTGTTGACTCAATGTGGCACGAGGGTTAAGTGGCGTTACGTCTCTT
CATCAGTTCCCTGCGCGTCTGAACAGCTGGCAGCAGTGTTACAGCGGAGA
TTTTCGCCAGGTACAGCGAGTTACCGGTTGGTTGGGCATAGTTTAGGGGC
GCAAGTGGTAATTCACACGGCAACGTTGTTGGCGCAGGCAAAGCGGAAGG
GACTGGAGAAATACGGAACGGCTGAAGAGATAAAAGGGAGTGAGATTGAT
GGCAATTCTGCGCAAGACAATTCCATGGCGGTTGACTTTATCTCTAGCAC
CAGCAGCAGTAATCCTGCCTGCTCCTCGTCGTCGTCGTCCCCCTCCCCTC
CCACCACACTCCAAGCCTCCTCCATGCTCCCCTCTCGCATTGCCCTCCTC
GATGCCTTCTTCACTTTGGAACCCAAAAGCTATCTTGGCTGGCGTTCCCT
CGCCAGTGTTCTGAAGGAAGAAATCACAGCTTTGGCTCAGGAGGAGGACG
TGGTGTTTGAACAGTACCAGACGTCTCTCCTCTCATTTGCAGCAAGCTTG
CACCTGAAGCCTCTGACGGCATTTTTCGATGTAGATCCCAAGCATATCCC
GTGGTGGAAGCTGCGGGCTCGGCATGTGTGTGCGCCATATCTGTATTTTC
ATTCGATGGCCTCGCAGGAGGTGGGAAGAAGGGTGGTGAAAGAGGTGGGG
GGTGCGTGGACGGATTTCTGGGGGGAGGTCCTTAGCCAGGATGTGTTGGA
GGACGAGGATTCGTTTCGTGGAATGGCGAAGACCCCGGACGCGCACTTGC
GTCTGTTGATACAGGCGTGTGGAAGTGGGGGGTTGTGGGAGCATATGTAT
GTGCATGTAACTTGCCGGTTGTTGATGTGGCGGTGA back to topCoding sequence (CDS) from alignment at scaffold_7:875141..877226- >mRNA_3186 ID=mRNA_3186|Name=jgi.p|Nanoce1779_2|638307|organism=Nannochloropsis oceanica|type=CDS|length=3534bp|location=Sequence derived from alignment at scaffold_7:875141..877226- (Nannochloropsis oceanica)
AGTGCTAGCCATGGTATCAGGCTTCCTCTCCCAGACGCCCACCGGGTCCA
CCGTCGCCTACGCTGCCGCTGCCGCCGAGGACAGAAACATGGACGCGTTG
CTCGGCCGCCTCCTGACGCCGCTCATTTCGAAAAAACGAGGTCAGCAGGC
AAGAAATGATGGGCAGGAGTATGATGATGACGACGACGACCGTTCGGACG
AGATTTATTCGGCATGGTTTGCAGGGCTGTTGGTTTTACCCGTCGGCGTC
CTCTACTCGGTCGTGCTCCTATTTCTCGGCACGTACAGCCACTGGTTTGT
CGCCTGTCGGCGGCATATCAGACGTTTTACAAGCCATCTTCTTTCCTGGT
GGCAGGCCTTTCGTGTCTTGGCTTTTTCTAGCAACCAGGATGGTCTGGAG
CTCCCGCCATTTCTGCCGCGTGAGACCTCTATCGGCGCAAACAGCAAGGC
CGGCCTGTATTGGTGCGGGTTGGGGGATGTGTGCGAACGCGACGACCACG
TGTTCTCTTCATCACTCTTTGACTCCAGCAAGCCGACCGTAATTTATGTG
CATGGATATCAACCAAGGACGATAATAAGAAACTTTCGTGAGTCACTCAA
TTGGAACGACAATGATGACGAGTACGGCTTGGACATGAACGCTGCAGATC
ACTGGCTGAAGGCTGGTTGGAACGTAGGCGTATTTTATTGGGCAAGTTAT
GCAGATGAGGACTATGTGCATGATGCAGAAGCAAAGATTTGGTCGAATGC
CACCCGAGTTGGAATGCGCTATCGTCTGTTGACTCAATGTGGCACGAGGG
TTAAGTGGCGTTACGTCTCTTCATCAGTTCCCTGCGCGTCTGAACAGCTG
GCAGCAGTGTTACAGCGGAGATTTTCGCCAGGTACAGCGAGTTACCGGTT
GGTTGGGCATAGTTTAGGGGCGCAAGTGGTAATTCACACGGCAACGTTGT
TGGCGCAGGCAAAGCGGAAGGGACTGGAGAAATACGGAACGGCTGAAGAG
ATAAAAGGGAGTGAGATTGATGGCAATTCTGCGCAAGACAATTCCATGGC
GGTTGACTTTATCTCTAGCACCAGCAGCAGTAATCCTGCCTGCTCCTCGT
CGTCGTCGTCCCCCTCCCCTCCCACCACACTCCAAGCCTCCTCCATGCTC
CCCTCTCGCATTGCCCTCCTCGATGCCTTCTTCACTTTGGAACCCAAAAG
CTATCTTGGCTGGCGTTCCCTCGCCAGTGTTCTGAAGGAAGAAATCACAG
CTTTGGCTCAGGAGGAGGACGTGGTGTTTGAACAGTACCAGACGTCTCTC
CTCTCATTTGCAGCAAGCTTGCACCTGAAGCCTCTGACGGCATTTTTCGA
TGTAGATCCCAAGCATATCCCGTGGTGGAAGCTGCGGGCTCGGCATGTGT
GTGCGCCATATCTGTATTTTCATTCGATGGCCTCGCAGGAGGTGGGAAGA
AGGGTGGTGAAAGAGGTGGGGGGTGCGTGGACGGATTTCTGGGGGGAGGT
CCTTAGCCAGGATGTGTTGGAGGACGAGGATTCGTTTCGTGGAATGGCGA
AGACCCCGGACGCGCACTTGCGTCTGTTGATACAGGCGTGTGGAAGTGGG
GGGTTGTGGGAGCATATGTATGTGCATGTAACTTGCCGGTTGTTGATGTG
GCGGTGAATGCACGCGGCGTCTGCGGGCAAGCAGAACGGTCCTCCTACGT
CGGCCTCTTCCTCGGAGCGGGCGATGATCCGCTTTTTTCAAATTAAAGTC
GAGTCGGGATGTTTCTCAGTGCTAGCCATGGTATCAGGCTTCCTCTCCCA
GACGCCCACCGGGTCCACCGTCGCCTACGCTGCCGCTGCCGCCGAGGACA
GAAACATGGACGCGTTGCTCGGCCGCCTCCTGACGCCGCTCATTTCGAAA
AAACGAGGTCAGCAGGCAAGAAATGATGGGCAGGAGTATGATGATGACGA
CGACGACCGTTCGGACGAGATTTATTCGGCATGGTTTGCAGGGCTGTTGG
TTTTACCCGTCGGCGTCCTCTACTCGGTCGTGCTCCTATTTCTCGGCACG
TACAGCCACTGGTTTGTCGCCTGTCGGCGGCATATCAGACGTTTTACAAG
CCATCTTCTTTCCTGGTGGCAGGCCTTTCGTGTCTTGGCTTTTTCTAGCA
ACCAGGATGGTCTGGAGCTCCCGCCATTTCTGCCGCGTGAGACCTCTATC
GGCGCAAACAGCAAGGCCGGCCTGTATTGGTGCGGGTTGGGGGATGTGTG
CGAACGCGACGACCACGTGTTCTCTTCATCACTCTTTGACTCCAGCAAGC
CGACCGTAATTTATGTGCATGGATATCAACCAAGGACGATAATAAGAAAC
TTTCGTGAGTCACTCAATTGGAACGACAATGATGACGAGTACGGCTTGGA
CATGAACGCTGCAGATCACTGGCTGAAGGCTGGTTGGAACGTAGGCGTAT
TTTATTGGGCAAGTTATGCAGATGAGGACTATGTGCATGATGCAGAAGCA
AAGATTTGGTCGAATGCCACCCGAGTTGGAATGCGCTATCGTCTGTTGAC
TCAATGTGGCACGAGGGTTAAGTGGCGTTACGTCTCTTCATCAGTTCCCT
GCGCGTCTGAACAGCTGGCAGCAGTGTTACAGCGGAGATTTTCGCCAGGT
ACAGCGAGTTACCGGTTGGTTGGGCATAGTTTAGGGGCGCAAGTGGTAAT
TCACACGGCAACGTTGTTGGCGCAGGCAAAGCGGAAGGGACTGGAGAAAT
ACGGAACGGCTGAAGAGATAAAAGGGAGTGAGATTGATGGCAATTCTGCG
CAAGACAATTCCATGGCGGTTGACTTTATCTCTAGCACCAGCAGCAGTAA
TCCTGCCTGCTCCTCGTCGTCGTCGTCCCCCTCCCCTCCCACCACACTCC
AAGCCTCCTCCATGCTCCCCTCTCGCATTGCCCTCCTCGATGCCTTCTTC
ACTTTGGAACCCAAAAGCTATCTTGGCTGGCGTTCCCTCGCCAGTGTTCT
GAAGGAAGAAATCACAGCTTTGGCTCAGGAGGAGGACGTGGTGTTTGAAC
AGTACCAGACGTCTCTCCTCTCATTTGCAGCAAGCTTGCACCTGAAGCCT
CTGACGGCATTTTTCGATGTAGATCCCAAGCATATCCCGTGGTGGAAGCT
GCGGGCTCGGCATGTGTGTGCGCCATATCTGTATTTTCATTCGATGGCCT
CGCAGGAGGTGGGAAGAAGGGTGGTGAAAGAGGTGGGGGGTGCGTGGACG
GATTTCTGGGGGGAGGTCCTTAGCCAGGATGTGTTGGAGGACGAGGATTC
GTTTCGTGGAATGGCGAAGACCCCGGACGCGCACTTGCGTCTGTTGATAC
AGGCGTGTGGAAGTGGGGGGTTGTGGGAGCATATGTATGTGCATGTAACT
TGCCGGTTGTTGATGTGGCGGTGAATGCACGCGGCGTCTGCGGGCAAGCA
GAACGGTCCTCCTACGTCGGCCTCTTCCTCGGAGCGGGCGATGATCCGCT
TTTTTCAAATTAAAGTCGAGTCGGGATGTTTCTC back to top
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