jgi.p|Nanoce1779_2|526320, mRNA_3185 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|526320
Unique Name	mRNA_3185
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1905
Alignment location	scaffold_7:872335..874239 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	526406
Track	FilteredModels2
ProteinId	526320

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:872335..874239 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526320	gene_3185	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526320	mRNA_3185-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3185	CDS_3185	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:872335..874239+
coding sequence from alignment at scaffold_7:872335..874239+

mRNA sequence

>mRNA_3185 ID=mRNA_3185|Name=jgi.p|Nanoce1779_2|526320|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
ATGCCCTCGCAACTGGCTCGCGAATCTCTTTGTCGTGCGACTCGTCCACT
CACTTGCCTATCTTCCCGTTCCTACCTCCCCCCTCCCTCTCCCCTCCAAA
AGGACCTAGAGGAGGCAGCCGGTCACTACTCGGAGGAATCTTACGACGCC
CGTCGGGACAAGCACCATCACTACCTTACCCAATACCAGCTACAACAACA
ACTGCCCCAACAAGGGTCCACTAGCAGCCGTACCAGCAGTGTTAGCAGCT
GCTCCACAGCGCTTCTCGCCGACACGGACCACATCTGTCTTGAAGCAGAA
GCAAGCGAGGAGGAAGGATCCAGCGGTGGGGACAGGTTTGAGAGCGGAGC
GGCACCGCGGGTGGTGATTTTTACCGCTGCTTATTACGTGTGTGATGGCG
TGAGTCTCACAATACGGAAACTCCGGGGGCACCTTCAATCGAAAGGGATC
GCATCCCGCGTCGTATCGTGTGGGCCTGCGGGCTGGAGCGAACCAGATGT
ATTTACGGTCCCTTCAATTCCGTTGCCGATTATTAATGCAGATGATAACT
TTGGGTATTCTCTAGGGCTCAAACTGACGGAACGTTGCAAGGCGCAGATC
AAGAGTTTTAAGCCTTCGGTCATTCACTTCACTGTGCCGGATTTTTTGGC
TTTGGATGCCCTGAGGTGGGCGAAGGCGGAGCATATCCCAGTGATGGGCA
CATGGCACAGCAATTATTCCGATTATCTGAAGTTTTATCATTTGAATATA
ATTCGATTGCCCGTGGAGAGGTACATTAGGTCGTTTTACGTTAACATGCC
CATCTACGTTCCCACGCCGTTTATTCGCAAGCGGTTGTTGGATAGTGGGT
TTCCGACAGAACGAGTGGGGATATGGGGGAGGGGGGTCGATTTCAATATG
TTCAAGCCGTCGAATCGATCGATGGCATTCAGGCGGGAGAGGGGGATTGA
GGATGATGAGGTCGTCATATTGTGGGTGGGGCGTCTGGTTAAGGAAAAGA
GTCCTGATATATGGGCGGAGGTAATACGGAGATTGGAAAGAGAGGGGTTA
AGATTTCGAGCTCTGGTGGTGGGGAGCGGGAGTTGGGAGGAGAATATGAA
AAAATTGCCAAGGACAGAGCATTTGGGGTGGTTGAGTGGGGAGGCGTTGG
CGCGGGTGTATGCGAGTGTGGACGTGTTTTTATTCCCGAGCGAGGTGGAG
ACGTTTGGTAATGTCACGTTGGAGGCCTTGGCAAGCGGCGTGCCGTGTGT
GGCGTCAGCGGGATGCAGTGGACATCTGGTAAGTCATGGGATCAATGGTT
TTGTGGTGGGAAAGGCGGATGTGGAGGAGTATTATATGTTGACGAGGCGT
TTGGTGGTGGACAAGGGATTGAGGGAGCGATTTGCGGCGAAAGCAAGGGG
CAGCATCAAGGAACTGGAGCATGATAGAGTGATGGATATGATGGTCACGA
ATTATGAGGGGGTAATGCATGCTTATCATCAGGTTGGGGGGGACGGCTGC
GCGAGTCGGAGTAATGGCTGGGGGGATGTCTGGATAGCGATGATATTTCA
CTTTTTTTCGTTTTTACTTTGGTTGGGGACACCGTTGATGAAGGGATATG
TGGCTGTCGCGAGTGGGGTGGGGGCATGCTGGAGGCGGCCGTTTTGGGGG
GGATTGCCGGATCGGATGCTGATGGGCTTTGCACGGTGTTTTTCTTGTTT
GATACGACGGCAGCAGCTGCAGCTGCCTCGAGTAGGGGGGGGAAGGGGAG
GTGGAGAAAGGGAAGGAGGGAGGCCGGTATTTCGAGAGCGGGTGAAGATG
TTGGCGATCTGTGTGTGGTTGTCTGCAATTGTGATAGTATATCACACGTA
TACGAGCATGGACTGGAAAGCAACGGTTGGAGGTTGGGGAGGGGAGGAGA
GGTAG

protein sequence of jgi.p|Nanoce1779_2|526320

>mRNA_3185-protein ID=mRNA_3185-protein|Name=jgi.p|Nanoce1779_2|526320|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MPSQLARESLCRATRPLTCLSSRSYLPPPSPLQKDLEEAAGHYSEESYDA
RRDKHHHYLTQYQLQQQLPQQGSTSSRTSSVSSCSTALLADTDHICLEAE
ASEEEGSSGGDRFESGAAPRVVIFTAAYYVCDGVSLTIRKLRGHLQSKGI
ASRVVSCGPAGWSEPDVFTVPSIPLPIINADDNFGYSLGLKLTERCKAQI
KSFKPSVIHFTVPDFLALDALRWAKAEHIPVMGTWHSNYSDYLKFYHLNI
IRLPVERYIRSFYVNMPIYVPTPFIRKRLLDSGFPTERVGIWGRGVDFNM
FKPSNRSMAFRRERGIEDDEVVILWVGRLVKEKSPDIWAEVIRRLEREGL
RFRALVVGSGSWEENMKKLPRTEHLGWLSGEALARVYASVDVFLFPSEVE
TFGNVTLEALASGVPCVASAGCSGHLVSHGINGFVVGKADVEEYYMLTRR
LVVDKGLRERFAAKARGSIKELEHDRVMDMMVTNYEGVMHAYHQVGGDGC
ASRSNGWGDVWIAMIFHFFSFLLWLGTPLMKGYVAVASGVGACWRRPFWG
GLPDRMLMGFARCFSCLIRRQQLQLPRVGGGRGGGEREGGRPVFRERVKM
LAICVWLSAIVIVYHTYTSMDWKATVGGWGGEER*

mRNA from alignment at scaffold_7:872335..874239+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3185 ID=mRNA_3185|Name=jgi.p|Nanoce1779_2|526320|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp|location=Sequence derived from alignment at scaffold_7:872335..874239+ (Nannochloropsis oceanica)
ATGCCCTCGCAACTGGCTCGCGAATCTCTTTGTCGTGCGACTCGTCCACT
CACTTGCCTATCTTCCCGTTCCTACCTCCCCCCTCCCTCTCCCCTCCAAA
AGGACCTAGAGGAGGCAGCCGGTCACTACTCGGAGGAATCTTACGACGCC
CGTCGGGACAAGCACCATCACTACCTTACCCAATACCAGCTACAACAACA
ACTGCCCCAACAAGGGTCCACTAGCAGCCGTACCAGCAGTGTTAGCAGCT
GCTCCACAGCGCTTCTCGCCGACACGGACCACATCTGTCTTGAAGCAGAA
GCAAGCGAGGAGGAAGGATCCAGCGGTGGGGACAGGTTTGAGAGCGGAGC
GGCACCGCGGGTGGTGATTTTTACCGCTGCTTATTACGTGTGTGATGGCG
TGAGTCTCACAATACGGAAACTCCGGGGGCACCTTCAATCGAAAGGGATC
GCATCCCGCGTCGTATCGTGTGGGCCTGCGGGCTGGAGCGAACCAGATGT
ATTTACGGTCCCTTCAATTCCGTTGCCGATTATTAATGCAGATGATAACT
TTGGGTATTCTCTAGGGCTCAAACTGACGGAACGTTGCAAGGCGCAGATC
AAGAGTTTTAAGCCTTCGGTCATTCACTTCACTGTGCCGGATTTTTTGGC
TTTGGATGCCCTGAGGTGGGCGAAGGCGGAGCATATCCCAGTGATGGGCA
CATGGCACAGCAATTATTCCGATTATCTGAAGTTTTATCATTTGAATATA
ATTCGATTGCCCGTGGAGAGGTACATTAGGTCGTTTTACGTTAACATGCC
CATCTACGTTCCCACGCCGTTTATTCGCAAGCGGTTGTTGGATAGTGGGT
TTCCGACAGAACGAGTGGGGATATGGGGGAGGGGGGTCGATTTCAATATG
TTCAAGCCGTCGAATCGATCGATGGCATTCAGGCGGGAGAGGGGGATTGA
GGATGATGAGGTCGTCATATTGTGGGTGGGGCGTCTGGTTAAGGAAAAGA
GTCCTGATATATGGGCGGAGGTAATACGGAGATTGGAAAGAGAGGGGTTA
AGATTTCGAGCTCTGGTGGTGGGGAGCGGGAGTTGGGAGGAGAATATGAA
AAAATTGCCAAGGACAGAGCATTTGGGGTGGTTGAGTGGGGAGGCGTTGG
CGCGGGTGTATGCGAGTGTGGACGTGTTTTTATTCCCGAGCGAGGTGGAG
ACGTTTGGTAATGTCACGTTGGAGGCCTTGGCAAGCGGCGTGCCGTGTGT
GGCGTCAGCGGGATGCAGTGGACATCTGGTAAGTCATGGGATCAATGGTT
TTGTGGTGGGAAAGGCGGATGTGGAGGAGTATTATATGTTGACGAGGCGT
TTGGTGGTGGACAAGGGATTGAGGGAGCGATTTGCGGCGAAAGCAAGGGG
CAGCATCAAGGAACTGGAGCATGATAGAGTGATGGATATGATGGTCACGA
ATTATGAGGGGGTAATGCATGCTTATCATCAGGTTGGGGGGGACGGCTGC
GCGAGTCGGAGTAATGGCTGGGGGGATGTCTGGATAGCGATGATATTTCA
CTTTTTTTCGTTTTTACTTTGGTTGGGGACACCGTTGATGAAGGGATATG
TGGCTGTCGCGAGTGGGGTGGGGGCATGCTGGAGGCGGCCGTTTTGGGGG
GGATTGCCGGATCGGATGCTGATGGGCTTTGCACGGTGTTTTTCTTGTTT
GATACGACGGCAGCAGCTGCAGCTGCCTCGAGTAGGGGGGGGAAGGGGAG
GTGGAGAAAGGGAAGGAGGGAGGCCGGTATTTCGAGAGCGGGTGAAGATG
TTGGCGATCTGTGTGTGGTTGTCTGCAATTGTGATAGTATATCACACGTA
TACGAGCATGGACTGGAAAGCAACGGTTGGAGGTTGGGGAGGGGAGGAGA
GGTAG

Coding sequence (CDS) from alignment at scaffold_7:872335..874239+

>mRNA_3185 ID=mRNA_3185|Name=jgi.p|Nanoce1779_2|526320|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at scaffold_7:872335..874239+ (Nannochloropsis oceanica)
ATGCCCTCGCAACTGGCTCGCGAATCTCTTTGTCGTGCGACTCGTCCACT
CACTTGCCTATCTTCCCGTTCCTACCTCCCCCCTCCCTCTCCCCTCCAAA
AGGACCTAGAGGAGGCAGCCGGTCACTACTCGGAGGAATCTTACGACGCC
CGTCGGGACAAGCACCATCACTACCTTACCCAATACCAGCTACAACAACA
ACTGCCCCAACAAGGGTCCACTAGCAGCCGTACCAGCAGTGTTAGCAGCT
GCTCCACAGCGCTTCTCGCCGACACGGACCACATCTGTCTTGAAGCAGAA
GCAAGCGAGGAGGAAGGATCCAGCGGTGGGGACAGGTTTGAGAGCGGAGC
GGCACCGCGGGTGGTGATTTTTACCGCTGCTTATTACGTGTGTGATGGCG
TGAGTCTCACAATACGGAAACTCCGGGGGCACCTTCAATCGAAAGGGATC
GCATCCCGCGTCGTATCGTGTGGGCCTGCGGGCTGGAGCGAACCAGATGT
ATTTACGGTCCCTTCAATTCCGTTGCCGATTATTAATGCAGATGATAACT
TTGGGTATTCTCTAGGGCTCAAACTGACGGAACGTTGCAAGGCGCAGATC
AAGAGTTTTAAGCCTTCGGTCATTCACTTCACTGTGCCGGATTTTTTGGC
TTTGGATGCCCTGAGGTGGGCGAAGGCGGAGCATATCCCAGTGATGGGCA
CATGGCACAGCAATTATTCCGATTATCTGAAGTTTTATCATTTGAATATA
ATTCGATTGCCCGTGGAGAGGTACATTAGGTCGTTTTACGTTAACATGCC
CATCTACGTTCCCACGCCGTTTATTCGCAAGCGGTTGTTGGATAGTGGGT
TTCCGACAGAACGAGTGGGGATATGGGGGAGGGGGGTCGATTTCAATATG
TTCAAGCCGTCGAATCGATCGATGGCATTCAGGCGGGAGAGGGGGATTGA
GGATGATGAGGTCGTCATATTGTGGGTGGGGCGTCTGGTTAAGGAAAAGA
GTCCTGATATATGGGCGGAGGTAATACGGAGATTGGAAAGAGAGGGGTTA
AGATTTCGAGCTCTGGTGGTGGGGAGCGGGAGTTGGGAGGAGAATATGAA
AAAATTGCCAAGGACAGAGCATTTGGGGTGGTTGAGTGGGGAGGCGTTGG
CGCGGGTGTATGCGAGTGTGGACGTGTTTTTATTCCCGAGCGAGGTGGAG
ACGTTTGGTAATGTCACGTTGGAGGCCTTGGCAAGCGGCGTGCCGTGTGT
GGCGTCAGCGGGATGCAGTGGACATCTGGTAAGTCATGGGATCAATGGTT
TTGTGGTGGGAAAGGCGGATGTGGAGGAGTATTATATGTTGACGAGGCGT
TTGGTGGTGGACAAGGGATTGAGGGAGCGATTTGCGGCGAAAGCAAGGGG
CAGCATCAAGGAACTGGAGCATGATAGAGTGATGGATATGATGGTCACGA
ATTATGAGGGGGTAATGCATGCTTATCATCAGGTTGGGGGGGACGGCTGC
GCGAGTCGGAGTAATGGCTGGGGGGATGTCTGGATAGCGATGATATTTCA
CTTTTTTTCGTTTTTACTTTGGTTGGGGACACCGTTGATGAAGGGATATG
TGGCTGTCGCGAGTGGGGTGGGGGCATGCTGGAGGCGGCCGTTTTGGGGG
GGATTGCCGGATCGGATGCTGATGGGCTTTGCACGGTGTTTTTCTTGTTT
GATACGACGGCAGCAGCTGCAGCTGCCTCGAGTAGGGGGGGGAAGGGGAG
GTGGAGAAAGGGAAGGAGGGAGGCCGGTATTTCGAGAGCGGGTGAAGATG
TTGGCGATCTGTGTGTGGTTGTCTGCAATTGTGATAGTATATCACACGTA
TACGAGCATGGACTGGAAAGCAACGGTTGGAGGTTGGGGAGGGGAGGAGA
GGTAG

Synonyms

Publications