jgi.p|Nanoce1779_2|584865, mRNA_3184 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584865
Unique Name	mRNA_3184
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1500
Alignment location	scaffold_7:869265..871042 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584951
Track	FilteredModels2
ProteinId	584865

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:869265..871042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584865	gene_3184	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584865	mRNA_3184-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3184	CDS_3184	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:869265..871042+
coding sequence from alignment at scaffold_7:869265..871042+

mRNA sequence

>mRNA_3184 ID=mRNA_3184|Name=jgi.p|Nanoce1779_2|584865|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
AACAGCATTTATGGACGACGAAAATGGAAATGTGGTGGTGGCGGCTAGCC
AGCACCATGGCCGTGGCTTGTTTGGAACGCGAGCATTCACGCCTAACGAG
ATCATCCTGCATGAGCGGCCACTGGTCGCCTTGCAAAGTTTGGAGAACCG
GCAGTACTTTCCGACGTGCGGATCGTGTTTGCACGTTATTGGCACATGCC
GGCAGCATCTTGTGCTGCTGGCCGAGCAAGGAGATCGCAGTCAGCTGGTT
CGGGAGGACGAGGCAAGACACCTGCAGGAAGAGGCCACAATCTTTCCGGC
AGCTGTGATGGCGTCGCTTGTGCCGTGCGCGATGGGCTGTGGTGAGTTGT
ATTGCACGCCTGAGTGCCGAGAAGAGCATTGGAATCGAGGGCATCGGTTG
TTGTGCGTGGGACACATCTCGGAGAGCGAGGCAGCTACGCACCCCCTGGT
GCTGTACAAAATGCACGCTTTGCGAACCAATGAGATATTTTTGCTCGTTG
CCGATGTCGTAGCATTGGTGCTCACGCGCTTTGATGCTAATGGCGGAGAT
ATAGCCGCGGCCTTGTTGCCGTTCAGTGATTTTGTGCAGCTCCCGTGGTG
GGAAGTAGCGACAAACCCCGACTCGAGTAGTGATCCCGTTGCATTTCAAG
ATATGCTTCGGAGCCTCGTCCAAGAAGCGGCTGATCTGTTGGCGAAAGCG
TTATTAACCAGACCTGGGGCGCCGCTTGCGGCATATCGGGGTGTGGTAGA
TGGGCTGTTCACGTCTGAATTCATGGCGTCGATGATTGGGATGTTTGAAC
AAAATAATGTAGGTATCCGTCGGCAGTCACCCTTGCCTTCTTTTTTGGCC
GAGCAGCTTGTACCGCGTTGTCACGAGCCCTCGGTGCTGGTTTATTTGCA
GTTGCTGGGAAAGATTTTGGAGGATTGGACGGATGCAGCGGAGGAGGAGG
ATGATGAAGAGGATGAAGAGGAGGCCAAAAACGAGGAGGGTGCCATGCAG
GTGGACAATGCAGAGGATGTAGGGGGTTCGTGTCGCGGCGGAGATGATCA
TGTCCATGACCATCAGCACAAAAGGATAGCCTCATCTTATTCGTCTGCGG
TGTCGTCATTGTCACCACCAGAGCTACTGGAGGCCTGTTTGACAAAGAGC
AAGACGTCAGATATCTTCTCTGCGCTGGACGGTACGGCATTGCTCTCCCT
CATATGTTGCATGAATCATTCATGCCAACCCAATTGTGAAGTGCGGTGGG
TAGGGGGTTTAGAGCCTAATTCGCCTTTGGTCGCAGAGTTGGTGGCCCTG
GAATCTATTCCAGCAGGAGGTGAGCTGTTTCAAAGTTACGTAACAGTGGA
AAATACGACGGTGGAGGAAAGGAGGAAGAAATTAAAGGAATATGGCTTTT
TGTGTCAGTGCCCGTTGTGTGCGAATGGGGACAAGCACTAGGAATATTTG
ATGCGAACAGTTCTTTTGGCGGAAAGAAGAAGACGTCAGAAAGTACGAGA

protein sequence of jgi.p|Nanoce1779_2|584865

>mRNA_3184-protein ID=mRNA_3184-protein|Name=jgi.p|Nanoce1779_2|584865|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MDDENGNVVVAASQHHGRGLFGTRAFTPNEIILHERPLVALQSLENRQYF
PTCGSCLHVIGTCRQHLVLLAEQGDRSQLVREDEARHLQEEATIFPAAVM
ASLVPCAMGCGELYCTPECREEHWNRGHRLLCVGHISESEAATHPLVLYK
MHALRTNEIFLLVADVVALVLTRFDANGGDIAAALLPFSDFVQLPWWEVA
TNPDSSSDPVAFQDMLRSLVQEAADLLAKALLTRPGAPLAAYRGVVDGLF
TSEFMASMIGMFEQNNVGIRRQSPLPSFLAEQLVPRCHEPSVLVYLQLLG
KILEDWTDAAEEEDDEEDEEEAKNEEGAMQVDNAEDVGGSCRGGDDHVHD
HQHKRIASSYSSAVSSLSPPELLEACLTKSKTSDIFSALDGTALLSLICC
MNHSCQPNCEVRWVGGLEPNSPLVAELVALESIPAGGELFQSYVTVENTT
VEERRKKLKEYGFLCQCPLCANGDKH*

mRNA from alignment at scaffold_7:869265..871042+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3184 ID=mRNA_3184|Name=jgi.p|Nanoce1779_2|584865|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp|location=Sequence derived from alignment at scaffold_7:869265..871042+ (Nannochloropsis oceanica)
AACAGCATTTATGGACGACGAAAATGGAAATGTGGTGGTGGCGGCTAGCC
AGCACCATGGCCGTGGCTTGTTTGGAACGCGAGCATTCACGCCTAACGAG
GTAAGCGATGCGGGGTGGTGAAGGAGAGGATGTCGGAGGGTGAGGTTACG
AACGCAGTTTGTCCTGTCCTTGCAAATAATTGTGGCTTTGATGCAGTATT
ACCAGAATCTTTGAGTAAGATGTGTGTCGATATCAAGGGATGTGCTTGAA
AAGGCGCATTTTAACCAAGGAGAATGAGAGCGGAGGAGGGAGGAAGGACG
GGTAGAGCCCCGATTCAAGTAAAGGTGTCTACTCACTTCCCACTGTTCGA
TCAACACCTTCACCCTCTTGGCCCCTAGATCATCCTGCATGAGCGGCCAC
TGGTCGCCTTGCAAAGTTTGGAGAACCGGCAGTACTTTCCGACGTGCGGA
TCGTGTTTGCACGTTATTGGCACATGCCGGCAGCATCTTGTGCTGCTGGC
CGAGCAAGGAGATCGCAGTCAGCTGGTTCGGGAGGACGAGGCAAGACACC
TGCAGGAAGAGGCCACAATCTTTCCGGCAGCTGTGATGGCGTCGCTTGTG
CCGTGCGCGATGGGCTGTGGTGAGTTGTATTGCACGCCTGAGTGCCGAGA
AGAGCATTGGAATCGAGGGCATCGGTTGTTGTGCGTGGGACACATCTCGG
AGAGCGAGGCAGCTACGCACCCCCTGGTGCTGTACAAAATGCACGCTTTG
CGAACCAATGAGATATTTTTGCTCGTTGCCGATGTCGTAGCATTGGTGCT
CACGCGCTTTGATGCTAATGGCGGAGATATAGCCGCGGCCTTGTTGCCGT
TCAGTGATTTTGTGCAGCTCCCGTGGTGGGAAGTAGCGACAAACCCCGAC
TCGAGTAGTGATCCCGTTGCATTTCAAGATATGCTTCGGAGCCTCGTCCA
AGAAGCGGCTGATCTGTTGGCGAAAGCGTTATTAACCAGACCTGGGGCGC
CGCTTGCGGCATATCGGGGTGTGGTAGATGGGCTGTTCACGTCTGAATTC
ATGGCGTCGATGATTGGGATGTTTGAACAAAATAATGTAGGTATCCGTCG
GCAGTCACCCTTGCCTTCTTTTTTGGCCGAGCAGCTTGTACCGCGTTGTC
ACGAGCCCTCGGTGCTGGTTTATTTGCAGTTGCTGGGAAAGATTTTGGAG
GATTGGACGGATGCAGCGGAGGAGGAGGATGATGAAGAGGATGAAGAGGA
GGCCAAAAACGAGGAGGGTGCCATGCAGGTGGACAATGCAGAGGATGTAG
GGGGTTCGTGTCGCGGCGGAGATGATCATGTCCATGACCATCAGCACAAA
AGGATAGCCTCATCTTATTCGTCTGCGGTGTCGTCATTGTCACCACCAGA
GCTACTGGAGGCCTGTTTGACAAAGAGCAAGACGTCAGATATCTTCTCTG
CGCTGGACGGTACGGCATTGCTCTCCCTCATATGTTGCATGAATCATTCA
TGCCAACCCAATTGTGAAGTGCGGTGGGTAGGGGGTTTAGAGCCTAATTC
GCCTTTGGTCGCAGAGTTGGTGGCCCTGGAATCTATTCCAGCAGGAGGTG
AGCTGTTTCAAAGTTACGTAACAGTGGAAAATACGACGGTGGAGGAAAGG
AGGAAGAAATTAAAGGAATATGGCTTTTTGTGTCAGTGCCCGTTGTGTGC
GAATGGGGACAAGCACTAGGAATATTTGATGCGAACAGTTCTTTTGGCGG
AAAGAAGAAGACGTCAGAAAGTACGAGA

Coding sequence (CDS) from alignment at scaffold_7:869265..871042+

>mRNA_3184 ID=mRNA_3184|Name=jgi.p|Nanoce1779_2|584865|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_7:869265..871042+ (Nannochloropsis oceanica)
ATGGACGACGAAAATGGAAATGTGGTGGTGGCGGCTAGCCAGCACCATGG
CCGTGGCTTGTTTGGAACGCGAGCATTCACGCCTAACGAGATCATCCTGC
ATGAGCGGCCACTGGTCGCCTTGCAAAGTTTGGAGAACCGGCAGTACTTT
CCGACGTGCGGATCGTGTTTGCACGTTATTGGCACATGCCGGCAGCATCT
TGTGCTGCTGGCCGAGCAAGGAGATCGCAGTCAGCTGGTTCGGGAGGACG
AGGCAAGACACCTGCAGGAAGAGGCCACAATCTTTCCGGCAGCTGTGATG
GCGTCGCTTGTGCCGTGCGCGATGGGCTGTGGTGAGTTGTATTGCACGCC
TGAGTGCCGAGAAGAGCATTGGAATCGAGGGCATCGGTTGTTGTGCGTGG
GACACATCTCGGAGAGCGAGGCAGCTACGCACCCCCTGGTGCTGTACAAA
ATGCACGCTTTGCGAACCAATGAGATATTTTTGCTCGTTGCCGATGTCGT
AGCATTGGTGCTCACGCGCTTTGATGCTAATGGCGGAGATATAGCCGCGG
CCTTGTTGCCGTTCAGTGATTTTGTGCAGCTCCCGTGGTGGGAAGTAGCG
ACAAACCCCGACTCGAGTAGTGATCCCGTTGCATTTCAAGATATGCTTCG
GAGCCTCGTCCAAGAAGCGGCTGATCTGTTGGCGAAAGCGTTATTAACCA
GACCTGGGGCGCCGCTTGCGGCATATCGGGGTGTGGTAGATGGGCTGTTC
ACGTCTGAATTCATGGCGTCGATGATTGGGATGTTTGAACAAAATAATGT
AGGTATCCGTCGGCAGTCACCCTTGCCTTCTTTTTTGGCCGAGCAGCTTG
TACCGCGTTGTCACGAGCCCTCGGTGCTGGTTTATTTGCAGTTGCTGGGA
AAGATTTTGGAGGATTGGACGGATGCAGCGGAGGAGGAGGATGATGAAGA
GGATGAAGAGGAGGCCAAAAACGAGGAGGGTGCCATGCAGGTGGACAATG
CAGAGGATGTAGGGGGTTCGTGTCGCGGCGGAGATGATCATGTCCATGAC
CATCAGCACAAAAGGATAGCCTCATCTTATTCGTCTGCGGTGTCGTCATT
GTCACCACCAGAGCTACTGGAGGCCTGTTTGACAAAGAGCAAGACGTCAG
ATATCTTCTCTGCGCTGGACGGTACGGCATTGCTCTCCCTCATATGTTGC
ATGAATCATTCATGCCAACCCAATTGTGAAGTGCGGTGGGTAGGGGGTTT
AGAGCCTAATTCGCCTTTGGTCGCAGAGTTGGTGGCCCTGGAATCTATTC
CAGCAGGAGGTGAGCTGTTTCAAAGTTACGTAACAGTGGAAAATACGACG
GTGGAGGAAAGGAGGAAGAAATTAAAGGAATATGGCTTTTTGTGTCAGTG
CCCGTTGTGTGCGAATGGGGACAAGCACTAGATGGACGACGAAAATGGAA
ATGTGGTGGTGGCGGCTAGCCAGCACCATGGCCGTGGCTTGTTTGGAACG
CGAGCATTCACGCCTAACGAGATCATCCTGCATGAGCGGCCACTGGTCGC
CTTGCAAAGTTTGGAGAACCGGCAGTACTTTCCGACGTGCGGATCGTGTT
TGCACGTTATTGGCACATGCCGGCAGCATCTTGTGCTGCTGGCCGAGCAA
GGAGATCGCAGTCAGCTGGTTCGGGAGGACGAGGCAAGACACCTGCAGGA
AGAGGCCACAATCTTTCCGGCAGCTGTGATGGCGTCGCTTGTGCCGTGCG
CGATGGGCTGTGGTGAGTTGTATTGCACGCCTGAGTGCCGAGAAGAGCAT
TGGAATCGAGGGCATCGGTTGTTGTGCGTGGGACACATCTCGGAGAGCGA
GGCAGCTACGCACCCCCTGGTGCTGTACAAAATGCACGCTTTGCGAACCA
ATGAGATATTTTTGCTCGTTGCCGATGTCGTAGCATTGGTGCTCACGCGC
TTTGATGCTAATGGCGGAGATATAGCCGCGGCCTTGTTGCCGTTCAGTGA
TTTTGTGCAGCTCCCGTGGTGGGAAGTAGCGACAAACCCCGACTCGAGTA
GTGATCCCGTTGCATTTCAAGATATGCTTCGGAGCCTCGTCCAAGAAGCG
GCTGATCTGTTGGCGAAAGCGTTATTAACCAGACCTGGGGCGCCGCTTGC
GGCATATCGGGGTGTGGTAGATGGGCTGTTCACGTCTGAATTCATGGCGT
CGATGATTGGGATGTTTGAACAAAATAATGTAGGTATCCGTCGGCAGTCA
CCCTTGCCTTCTTTTTTGGCCGAGCAGCTTGTACCGCGTTGTCACGAGCC
CTCGGTGCTGGTTTATTTGCAGTTGCTGGGAAAGATTTTGGAGGATTGGA
CGGATGCAGCGGAGGAGGAGGATGATGAAGAGGATGAAGAGGAGGCCAAA
AACGAGGAGGGTGCCATGCAGGTGGACAATGCAGAGGATGTAGGGGGTTC
GTGTCGCGGCGGAGATGATCATGTCCATGACCATCAGCACAAAAGGATAG
CCTCATCTTATTCGTCTGCGGTGTCGTCATTGTCACCACCAGAGCTACTG
GAGGCCTGTTTGACAAAGAGCAAGACGTCAGATATCTTCTCTGCGCTGGA
CGGTACGGCATTGCTCTCCCTCATATGTTGCATGAATCATTCATGCCAAC
CCAATTGTGAAGTGCGGTGGGTAGGGGGTTTAGAGCCTAATTCGCCTTTG
GTCGCAGAGTTGGTGGCCCTGGAATCTATTCCAGCAGGAGGTGAGCTGTT
TCAAAGTTACGTAACAGTGGAAAATACGACGGTGGAGGAAAGGAGGAAGA
AATTAAAGGAATATGGCTTTTTGTGTCAGTGCCCGTTGTGTGCGAATGGG
GACAAGCACTAG

Synonyms

Publications