jgi.p|Nanoce1779_2|584859, mRNA_3183 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584859
Unique Name	mRNA_3183
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2471
Alignment location	scaffold_7:865567..868037 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584945
Track	FilteredModels2
ProteinId	584859

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:865567..868037 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584859	gene_3183	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584859	mRNA_3183-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3183	CDS_3183	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:865567..868037-
coding sequence from alignment at scaffold_7:865567..868037-

mRNA sequence

>mRNA_3183 ID=mRNA_3183|Name=jgi.p|Nanoce1779_2|584859|organism=Nannochloropsis oceanica|type=mRNA|length=2471bp
CAGCGACTGGCTTCCGTCCTCCTCCTCCTCGATCATCCTCCCCATCAGCA
GCACCAGTAGCAACAATTACAGCCACAGCAGCAGCAGCAGCATCAGCAAC
AGCAGCAGCAGCAGGAGAAGGAGCTGGAGGCAAACAATCGCCAGCCCGTC
CTCCTCCTACCCCTCAAGATTTACAGGGTCAAGTCGCACAAGTAGAAGAC
GTTCCAATAGACATCTGGGTCTGCCCCGTTTGCCTCCAGAACTTCGACGA
ACCATGTCGACTTCCCTCCTGCGCGCATGTCTTCTGCAAAACCTGCATTC
AAGGTATCGTTCGCAACATCCTCACCGCTCAGCAGCAGCAGCAGGAGCAG
CAGCAGTCGCCTGTCCCTCAACTCGCCCAGCATTGTCACTGCCCCCTGTG
TCGTTCAGAATTTGTCCCCTCAGAAGTGCGACGTCACGATGCCCTCCTCC
TCGAGATGGCCGTTGCCCGTATCCGTTGCCCCAACGTCCGTTGTGGTACC
GTTTTGTCCCCCCTTGAGAGCAAGCGTCACCAGGACGAGTGCCTGTACAG
CAACGTTCAATGCCCCCACCAGCCCCACGGGTGCAGCTTCCGTACCGCTC
GGAAAGACCTCCGAGCCCACTTGACTATATGCCCCTACGAGCAAATTAAG
GGGCTGTACCCCAAGATCCGCCAATCCAACGAACATGTCACTGCCGCCAT
GCGGGGATGGGAGAACGCTTTCCTTTCCCAACAGCAGATGCTCGCCTCCC
ACACCGCTTCCATACGTATGCTCGATCGTCGATCCCCTTCCAACCCCTTG
CACCACCTGCAGCTCCTCGCCCTCTTTTTTTGGAAACCTTTCCTGTGGCT
CCCGCAACTTGACCGGTGGACCCGTACTGGCTTTTCGCCCCGCCTGACTG
TAATGGCCATGTACCTTGCCCCGCTCCTCCTCGTCCTCCTTAAGGTCTCT
GCTCGTGGCAGCCCTGATTACTCCTCGGCTGAGAGAGGGAGAGAAGAGGG
ATGGTACCTATTCTATCCCCCCGCAGCTGGCTACCCCGCACCAATAATTG
GTATTGACTGCTTCCCTCCTCCCAAGATGGCCGATTACTCTTCCTCCCTC
CTTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCGTCTCCTCTTCCTT
CTCCTCTTTTGTCTTCTCCACCCTCTTTTCCTCTATTGTATCCTTCTTCA
CCTCCTTCTTCGAAGCATCGCAGGAGCAGCAAGGGCAGCGGCATCAGCAG
GTGGAGGTAGTGTGTGCTGGAGGTGTTTCTCCTGAATGGACCTGGCTGTT
CTTCATTCTTGTCGTTTTCATTGCGGTTTTCGAAATGCAAGATGAAGCGC
ATTGGGTCTTTCGGAAAGAGGATCGCATCCGTCTTTGGCCTTCCCCCCCC
CTACTCTCCTCCCCTTCCTCCACCTCTCCTTCCACTTCCGCCGATTCAAC
AAGCGGTCCAGCTCCTCCTCTTCCTCCCTCTTCATCTCCTTCTTCCTTCT
CCTCCTCCCCCCCGCAAGCAGCAACTGGCACCACCACCGTCAGCGCCTCG
TCCTCCCCTTCTTTCCCCCTCTCCTTTCCTACCGAGCTGCCCATTTCCTT
GTACTACGGCGAGTACCTCCTCCAAGTCGCTGCCGCATGGGGCTGCTACT
CCCTGGGGGGTGGTTATTCCCACCCCTCCTCCCTTCTCTCCCTTCCTCCC
TTCCTGCGAGGCTCGGCACTAGTGCGGTACGGCTCCTTGTTTTTGAGTTT
GATTCCAGCAACGGCGTTGCAAATGGTAGCTCCACGGTGTAAATTGGAGA
AGCCCGTTGTGCAGGGTATAGTGTTGGGGTTGTGCATGTACTTGGTGGAA
TGGCGCGCCTTGGCCGCATCAATTATTTTAGAATCCTTTCTAAATCGAGC
ATTTTTTTATATTTGTGGGTCCGTGATTTTGGAGGCGTTGGCTGAGGGGA
GGACAAGGCTGATGAAGAGGTACACGGACAGACCAGGAGCGAAATTGAGA
GGGGTTGGTTTTTTGTGCTTGGCCTTGGGAATGCTTTCGATAGGAAGGAG
CTGGGAGCTGATGAAAGGGATTGCATTTAGAACCGTGGGGACTTCCATAG
CTTATATCTTTCGAGTTGCGCTCGCGAGGTTTATGGAGAAAGCACAGAAC
ATGCCAAGGCCGCCTGTGAACGCGGCGACGGCACGGGTGCTGGAGTCGCA
ACTGGATCGGCCCTTCCCGGGGAAGTATCTGTTGACGACGACGCGAATGC
TCTTGGTCTCATCGGTGTTGGGCATGACGTTGTTGGCATTTTATTGATTT
TCATGACTTGTGTGTAGGTGGATGTGGAGATGGCGTTTTCAGGGCGAGAG
ACCCAGAGAGGGAATGTACTTGGACGACAGTTGAAATACAAATTGACAAT
AAGTCCCTCGACTTGTCCATATATTCAAGGCGGTCCATTTGTAATAAAGA
ATCAAACTTTCATTCGAAGAA

protein sequence of jgi.p|Nanoce1779_2|584859

>mRNA_3183-protein ID=mRNA_3183-protein|Name=jgi.p|Nanoce1779_2|584859|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MAVARIRCPNVRCGTVLSPLESKRHQDECLYSNVQCPHQPHGCSFRTARK
DLRAHLTICPYEQIKGLYPKIRQSNEHVTAAMRGWENAFLSQQQMLASHT
ASIRMLDRRSPSNPLHHLQLLALFFWKPFLWLPQLDRWTRTGFSPRLTVM
AMYLAPLLLVLLKVSARGSPDYSSAERGREEGWYLFYPPAAGYPAPIIGI
DCFPPPKMADYSSSLLSSSSSSSSSSSVSSSFSSFVFSTLFSSIVSFFTS
FFEASQEQQGQRHQQVEVVCAGGVSPEWTWLFFILVVFIAVFEMQDEAHW
VFRKEDRIRLWPSPPLLSSPSSTSPSTSADSTSGPAPPLPPSSSPSSFSS
SPPQAATGTTTVSASSSPSFPLSFPTELPISLYYGEYLLQVAAAWGCYSL
GGGYSHPSSLLSLPPFLRGSALVRYGSLFLSLIPATALQMVAPRCKLEKP
VVQGIVLGLCMYLVEWRALAASIILESFLNRAFFYICGSVILEALAEGRT
RLMKRYTDRPGAKLRGVGFLCLALGMLSIGRSWELMKGIAFRTVGTSIAY
IFRVALARFMEKAQNMPRPPVNAATARVLESQLDRPFPGKYLLTTTRMLL
VSSVLGMTLLAFY*

mRNA from alignment at scaffold_7:865567..868037-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3183 ID=mRNA_3183|Name=jgi.p|Nanoce1779_2|584859|organism=Nannochloropsis oceanica|type=mRNA|length=2471bp|location=Sequence derived from alignment at scaffold_7:865567..868037- (Nannochloropsis oceanica)
CAGCGACTGGCTTCCGTCCTCCTCCTCCTCGATCATCCTCCCCATCAGCA
GCACCAGTAGCAACAATTACAGCCACAGCAGCAGCAGCAGCATCAGCAAC
AGCAGCAGCAGCAGGAGAAGGAGCTGGAGGCAAACAATCGCCAGCCCGTC
CTCCTCCTACCCCTCAAGATTTACAGGGTCAAGTCGCACAAGTAGAAGAC
GTTCCAATAGACATCTGGGTCTGCCCCGTTTGCCTCCAGAACTTCGACGA
ACCATGTCGACTTCCCTCCTGCGCGCATGTCTTCTGCAAAACCTGCATTC
AAGGTATCGTTCGCAACATCCTCACCGCTCAGCAGCAGCAGCAGGAGCAG
CAGCAGTCGCCTGTCCCTCAACTCGCCCAGCATTGTCACTGCCCCCTGTG
TCGTTCAGAATTTGTCCCCTCAGAAGTGCGACGTCACGATGCCCTCCTCC
TCGAGATGGCCGTTGCCCGTATCCGTTGCCCCAACGTCCGTTGTGGTACC
GTTTTGTCCCCCCTTGAGAGCAAGCGTCACCAGGACGAGTGCCTGTACAG
CAACGTTCAATGCCCCCACCAGCCCCACGGGTGCAGCTTCCGTACCGCTC
GGAAAGACCTCCGAGCCCACTTGACTATATGCCCCTACGAGCAAATTAAG
GGGCTGTACCCCAAGATCCGCCAATCCAACGAACATGTCACTGCCGCCAT
GCGGGGATGGGAGAACGCTTTCCTTTCCCAACAGCAGATGCTCGCCTCCC
ACACCGCTTCCATACGTATGCTCGATCGTCGATCCCCTTCCAACCCCTTG
CACCACCTGCAGCTCCTCGCCCTCTTTTTTTGGAAACCTTTCCTGTGGCT
CCCGCAACTTGACCGGTGGACCCGTACTGGCTTTTCGCCCCGCCTGACTG
TAATGGCCATGTACCTTGCCCCGCTCCTCCTCGTCCTCCTTAAGGTCTCT
GCTCGTGGCAGCCCTGATTACTCCTCGGCTGAGAGAGGGAGAGAAGAGGG
ATGGTACCTATTCTATCCCCCCGCAGCTGGCTACCCCGCACCAATAATTG
GTATTGACTGCTTCCCTCCTCCCAAGATGGCCGATTACTCTTCCTCCCTC
CTTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCGTCTCCTCTTCCTT
CTCCTCTTTTGTCTTCTCCACCCTCTTTTCCTCTATTGTATCCTTCTTCA
CCTCCTTCTTCGAAGCATCGCAGGAGCAGCAAGGGCAGCGGCATCAGCAG
GTGGAGGTAGTGTGTGCTGGAGGTGTTTCTCCTGAATGGACCTGGCTGTT
CTTCATTCTTGTCGTTTTCATTGCGGTTTTCGAAATGCAAGATGAAGCGC
ATTGGGTCTTTCGGAAAGAGGATCGCATCCGTCTTTGGCCTTCCCCCCCC
CTACTCTCCTCCCCTTCCTCCACCTCTCCTTCCACTTCCGCCGATTCAAC
AAGCGGTCCAGCTCCTCCTCTTCCTCCCTCTTCATCTCCTTCTTCCTTCT
CCTCCTCCCCCCCGCAAGCAGCAACTGGCACCACCACCGTCAGCGCCTCG
TCCTCCCCTTCTTTCCCCCTCTCCTTTCCTACCGAGCTGCCCATTTCCTT
GTACTACGGCGAGTACCTCCTCCAAGTCGCTGCCGCATGGGGCTGCTACT
CCCTGGGGGGTGGTTATTCCCACCCCTCCTCCCTTCTCTCCCTTCCTCCC
TTCCTGCGAGGCTCGGCACTAGTGCGGTACGGCTCCTTGTTTTTGAGTTT
GATTCCAGCAACGGCGTTGCAAATGGTAGCTCCACGGTGTAAATTGGAGA
AGCCCGTTGTGCAGGGTATAGTGTTGGGGTTGTGCATGTACTTGGTGGAA
TGGCGCGCCTTGGCCGCATCAATTATTTTAGAATCCTTTCTAAATCGAGC
ATTTTTTTATATTTGTGGGTCCGTGATTTTGGAGGCGTTGGCTGAGGGGA
GGACAAGGCTGATGAAGAGGTACACGGACAGACCAGGAGCGAAATTGAGA
GGGGTTGGTTTTTTGTGCTTGGCCTTGGGAATGCTTTCGATAGGAAGGAG
CTGGGAGCTGATGAAAGGGATTGCATTTAGAACCGTGGGGACTTCCATAG
CTTATATCTTTCGAGTTGCGCTCGCGAGGTTTATGGAGAAAGCACAGAAC
ATGCCAAGGCCGCCTGTGAACGCGGCGACGGCACGGGTGCTGGAGTCGCA
ACTGGATCGGCCCTTCCCGGGGAAGTATCTGTTGACGACGACGCGAATGC
TCTTGGTCTCATCGGTGTTGGGCATGACGTTGTTGGCATTTTATTGATTT
TCATGACTTGTGTGTAGGTGGATGTGGAGATGGCGTTTTCAGGGCGAGAG
ACCCAGAGAGGGAATGTACTTGGACGACAGTTGAAATACAAATTGACAAT
AAGTCCCTCGACTTGTCCATATATTCAAGGCGGTCCATTTGTAATAAAGA
ATCAAACTTTCATTCGAAGAA

Coding sequence (CDS) from alignment at scaffold_7:865567..868037-

>mRNA_3183 ID=mRNA_3183|Name=jgi.p|Nanoce1779_2|584859|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at scaffold_7:865567..868037- (Nannochloropsis oceanica)
ATGGCCGTTGCCCGTATCCGTTGCCCCAACGTCCGTTGTGGTACCGTTTT
GTCCCCCCTTGAGAGCAAGCGTCACCAGGACGAGTGCCTGTACAGCAACG
TTCAATGCCCCCACCAGCCCCACGGGTGCAGCTTCCGTACCGCTCGGAAA
GACCTCCGAGCCCACTTGACTATATGCCCCTACGAGCAAATTAAGGGGCT
GTACCCCAAGATCCGCCAATCCAACGAACATGTCACTGCCGCCATGCGGG
GATGGGAGAACGCTTTCCTTTCCCAACAGCAGATGCTCGCCTCCCACACC
GCTTCCATACGTATGCTCGATCGTCGATCCCCTTCCAACCCCTTGCACCA
CCTGCAGCTCCTCGCCCTCTTTTTTTGGAAACCTTTCCTGTGGCTCCCGC
AACTTGACCGGTGGACCCGTACTGGCTTTTCGCCCCGCCTGACTGTAATG
GCCATGTACCTTGCCCCGCTCCTCCTCGTCCTCCTTAAGGTCTCTGCTCG
TGGCAGCCCTGATTACTCCTCGGCTGAGAGAGGGAGAGAAGAGGGATGGT
ACCTATTCTATCCCCCCGCAGCTGGCTACCCCGCACCAATAATTGGTATT
GACTGCTTCCCTCCTCCCAAGATGGCCGATTACTCTTCCTCCCTCCTTTC
CTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCGTCTCCTCTTCCTTCTCCT
CTTTTGTCTTCTCCACCCTCTTTTCCTCTATTGTATCCTTCTTCACCTCC
TTCTTCGAAGCATCGCAGGAGCAGCAAGGGCAGCGGCATCAGCAGGTGGA
GGTAGTGTGTGCTGGAGGTGTTTCTCCTGAATGGACCTGGCTGTTCTTCA
TTCTTGTCGTTTTCATTGCGGTTTTCGAAATGCAAGATGAAGCGCATTGG
GTCTTTCGGAAAGAGGATCGCATCCGTCTTTGGCCTTCCCCCCCCCTACT
CTCCTCCCCTTCCTCCACCTCTCCTTCCACTTCCGCCGATTCAACAAGCG
GTCCAGCTCCTCCTCTTCCTCCCTCTTCATCTCCTTCTTCCTTCTCCTCC
TCCCCCCCGCAAGCAGCAACTGGCACCACCACCGTCAGCGCCTCGTCCTC
CCCTTCTTTCCCCCTCTCCTTTCCTACCGAGCTGCCCATTTCCTTGTACT
ACGGCGAGTACCTCCTCCAAGTCGCTGCCGCATGGGGCTGCTACTCCCTG
GGGGGTGGTTATTCCCACCCCTCCTCCCTTCTCTCCCTTCCTCCCTTCCT
GCGAGGCTCGGCACTAGTGCGGTACGGCTCCTTGTTTTTGAGTTTGATTC
CAGCAACGGCGTTGCAAATGGTAGCTCCACGGTGTAAATTGGAGAAGCCC
GTTGTGCAGGGTATAGTGTTGGGGTTGTGCATGTACTTGGTGGAATGGCG
CGCCTTGGCCGCATCAATTATTTTAGAATCCTTTCTAAATCGAGCATTTT
TTTATATTTGTGGGTCCGTGATTTTGGAGGCGTTGGCTGAGGGGAGGACA
AGGCTGATGAAGAGGTACACGGACAGACCAGGAGCGAAATTGAGAGGGGT
TGGTTTTTTGTGCTTGGCCTTGGGAATGCTTTCGATAGGAAGGAGCTGGG
AGCTGATGAAAGGGATTGCATTTAGAACCGTGGGGACTTCCATAGCTTAT
ATCTTTCGAGTTGCGCTCGCGAGGTTTATGGAGAAAGCACAGAACATGCC
AAGGCCGCCTGTGAACGCGGCGACGGCACGGGTGCTGGAGTCGCAACTGG
ATCGGCCCTTCCCGGGGAAGTATCTGTTGACGACGACGCGAATGCTCTTG
GTCTCATCGGTGTTGGGCATGACGTTGTTGGCATTTTATTGA

Synonyms

Publications