jgi.p|Nanoce1779_2|669959, mRNA_3181 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669959
Unique Name	mRNA_3181
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2011
Alignment location	scaffold_7:862074..864084 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670045
Track	FilteredModels2
ProteinId	669959

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:862074..864084 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669959	gene_3181	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669959	mRNA_3181-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3181	CDS_3181	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:862074..864084+
coding sequence from alignment at scaffold_7:862074..864084+

mRNA sequence

>mRNA_3181 ID=mRNA_3181|Name=jgi.p|Nanoce1779_2|669959|organism=Nannochloropsis oceanica|type=mRNA|length=2011bp
GGTCCGACCTTCCCCCTGCCACCTATTCCTCACTCCGCCACCTCGCACGA
CGTTATATACACACGACACAGGACACGCACATCTCCACGACGCCGAAACA
TGCGGATGGCTTCCTGTGTATTCGTGGTAGTAGCTGTGGCGGTTCTGCTG
CCCTCGGCGTCCCAAGCCTTCCTTGTCCGCCCAATCTCCTCCACTGCACC
ATCAGCCCCTACTACAACTACAAGGCGGCACGCCGCAACGGTGGACCCAC
CCTCAAACCCAGCCGCGGCCGTGGATAAACTCCAATTGACATTTTCGGCT
GATGAGGAAGAGGCGGTGTTTTCCTTTGAGCGTCGTCTCAAGGACTCGGG
CGTGGTCGCGGAGGGGTTGGAGCACGCCCTCTTCTGGCCTGTGGATGACG
CAGCCCCATGCCGCGGTCTCAAGACTCAAGTCGACGCCCCCCCAAATAAA
GCGCTGATTGAGCTACCAAAAGGCCAAGCTATCTGTCTAGATGAAGGAGA
GGGCACGCCATTTCCTCAATGGGTCCCGGCCAAGCAATGGAAAAAAATGC
CTTGGTACGCTCAACTCGGGCTCAAGCTTGTGTACGAACGCAAGACCTCC
ACCAGTGCCCTCAAGACTGGCTACGCACAGCTTTTGCCACCCCCAAAGGC
CTTGCCAACCCCCTTTCATTGGTCTGACTTGGATCTCAATGCGCTCCGAA
GTGTTTACCCCGCACTTGCCAACAAAGTGGACAGACAACGAACAGTTTGG
GCCGGGCTTTATGACACCCTGGGGAAGACCCGGGCGGTCCGCGAGGATAT
GGACGAAGACACCTTTGTGTGGGCCATGGAAAGTGTGCTTTCTCGCGCGT
TCAAGGGGACGTTCGGTACGGGTTTTAATAGCTTAGCGCCTTCCTTATTG
TTGATGGGCATCTTTGCCGGGATTTACTATATTGACCAAGAAACGATTCA
ACTCGTCAGCTACGCCTTGGAAGAATATCCGTATCTCGCAGCGATTCCAG
CGGGGTTGACGCTGTTGCCTTCTGTATTGGAGTTCTTCAAGTCTAAAGGC
ACGTATGTACTGGCGCCCATGATAGATAGTTTGAATCATCGGTCAACTGT
CCCCACGGACTTGGACTACGATTCGATTCGGCAGCGGTTCAGGTTGAGTC
TGGGGGTGGGGTATCGGGCGGGGGATCAGGTGTTCATGTCATACGGGAGT
AAGACTAATGATGACTTACTGTTGCATTATGGCTTTGTTGAAGTGGACGC
CCCAAGCGACGTGTTTGAGTTCGGGGATCTGTTGACTTGGTTGGTGGAGA
AGAGGGCGGGGATCGTGAACGATGACAGGGTTCAGACATTGTTTTCAAAG
GGACTACAGGATAATGTGCGGGGGTGTAAGGTAGGCAGAAAAGGGAAGAT
TGTGGATGAGAAGGCCTTGGAGGGGTTGCGGATACTACTGGCTTCGGATG
ATGAATTAAGGGCAGAAAATGCGATTACGGAGAGTATCATTCAAACGCCA
ATGTTCCTGACCATGGACGAATTTCAGGACTCTGTATTTAAAAGGGAACT
GCAAAGTCCGACGGAGTTGGCGGTGTATGAAGCGTTATTGGAGGCCTGTC
TGGAGCAGCGGCAGTTGTTGTCGTTGACAAGGGAGGAGGAGGAGGAGATG
AGAGTGGCGAAGGCGAATCGAACCCAGGTTGGGGGAGGGAACGAAAATAC
GGAGAAAGCGCCTCGATTGCTGACACTGATGTTTAGATTGGAGAAGTTAC
GGCTGTTGGATGAGGCGATAACGAGGTTTCGAAAGTTAACGGGGAATGAG
AAACAGCTGCTGTTACCTTCGCCCACGAGTAGCAACAGTAGTAGTGTGAG
TGGTGATACTGCAGCATCAGCAGTAAGAGCAGTGGCAGCATCGAAAGAGG
CATAGATAGGAGAGAGAGAAAGAGAGGACGCGGAGGATTGGGAGTATGAC
AAGCGCATGCATCGGATACAGCGAAGATAAAAATGTAACAAATCTACCTT
AAGCGACCGAG

protein sequence of jgi.p|Nanoce1779_2|669959

>mRNA_3181-protein ID=mRNA_3181-protein|Name=jgi.p|Nanoce1779_2|669959|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MRMASCVFVVVAVAVLLPSASQAFLVRPISSTAPSAPTTTTRRHAATVDP
PSNPAAAVDKLQLTFSADEEEAVFSFERRLKDSGVVAEGLEHALFWPVDD
AAPCRGLKTQVDAPPNKALIELPKGQAICLDEGEGTPFPQWVPAKQWKKM
PWYAQLGLKLVYERKTSTSALKTGYAQLLPPPKALPTPFHWSDLDLNALR
SVYPALANKVDRQRTVWAGLYDTLGKTRAVREDMDEDTFVWAMESVLSRA
FKGTFGTGFNSLAPSLLLMGIFAGIYYIDQETIQLVSYALEEYPYLAAIP
AGLTLLPSVLEFFKSKGTYVLAPMIDSLNHRSTVPTDLDYDSIRQRFRLS
LGVGYRAGDQVFMSYGSKTNDDLLLHYGFVEVDAPSDVFEFGDLLTWLVE
KRAGIVNDDRVQTLFSKGLQDNVRGCKVGRKGKIVDEKALEGLRILLASD
DELRAENAITESIIQTPMFLTMDEFQDSVFKRELQSPTELAVYEALLEAC
LEQRQLLSLTREEEEEMRVAKANRTQVGGGNENTEKAPRLLTLMFRLEKL
RLLDEAITRFRKLTGNEKQLLLPSPTSSNSSSVSGDTAASAVRAVAASKE
A*

mRNA from alignment at scaffold_7:862074..864084+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3181 ID=mRNA_3181|Name=jgi.p|Nanoce1779_2|669959|organism=Nannochloropsis oceanica|type=mRNA|length=2011bp|location=Sequence derived from alignment at scaffold_7:862074..864084+ (Nannochloropsis oceanica)
GGTCCGACCTTCCCCCTGCCACCTATTCCTCACTCCGCCACCTCGCACGA
CGTTATATACACACGACACAGGACACGCACATCTCCACGACGCCGAAACA
TGCGGATGGCTTCCTGTGTATTCGTGGTAGTAGCTGTGGCGGTTCTGCTG
CCCTCGGCGTCCCAAGCCTTCCTTGTCCGCCCAATCTCCTCCACTGCACC
ATCAGCCCCTACTACAACTACAAGGCGGCACGCCGCAACGGTGGACCCAC
CCTCAAACCCAGCCGCGGCCGTGGATAAACTCCAATTGACATTTTCGGCT
GATGAGGAAGAGGCGGTGTTTTCCTTTGAGCGTCGTCTCAAGGACTCGGG
CGTGGTCGCGGAGGGGTTGGAGCACGCCCTCTTCTGGCCTGTGGATGACG
CAGCCCCATGCCGCGGTCTCAAGACTCAAGTCGACGCCCCCCCAAATAAA
GCGCTGATTGAGCTACCAAAAGGCCAAGCTATCTGTCTAGATGAAGGAGA
GGGCACGCCATTTCCTCAATGGGTCCCGGCCAAGCAATGGAAAAAAATGC
CTTGGTACGCTCAACTCGGGCTCAAGCTTGTGTACGAACGCAAGACCTCC
ACCAGTGCCCTCAAGACTGGCTACGCACAGCTTTTGCCACCCCCAAAGGC
CTTGCCAACCCCCTTTCATTGGTCTGACTTGGATCTCAATGCGCTCCGAA
GTGTTTACCCCGCACTTGCCAACAAAGTGGACAGACAACGAACAGTTTGG
GCCGGGCTTTATGACACCCTGGGGAAGACCCGGGCGGTCCGCGAGGATAT
GGACGAAGACACCTTTGTGTGGGCCATGGAAAGTGTGCTTTCTCGCGCGT
TCAAGGGGACGTTCGGTACGGGTTTTAATAGCTTAGCGCCTTCCTTATTG
TTGATGGGCATCTTTGCCGGGATTTACTATATTGACCAAGAAACGATTCA
ACTCGTCAGCTACGCCTTGGAAGAATATCCGTATCTCGCAGCGATTCCAG
CGGGGTTGACGCTGTTGCCTTCTGTATTGGAGTTCTTCAAGTCTAAAGGC
ACGTATGTACTGGCGCCCATGATAGATAGTTTGAATCATCGGTCAACTGT
CCCCACGGACTTGGACTACGATTCGATTCGGCAGCGGTTCAGGTTGAGTC
TGGGGGTGGGGTATCGGGCGGGGGATCAGGTGTTCATGTCATACGGGAGT
AAGACTAATGATGACTTACTGTTGCATTATGGCTTTGTTGAAGTGGACGC
CCCAAGCGACGTGTTTGAGTTCGGGGATCTGTTGACTTGGTTGGTGGAGA
AGAGGGCGGGGATCGTGAACGATGACAGGGTTCAGACATTGTTTTCAAAG
GGACTACAGGATAATGTGCGGGGGTGTAAGGTAGGCAGAAAAGGGAAGAT
TGTGGATGAGAAGGCCTTGGAGGGGTTGCGGATACTACTGGCTTCGGATG
ATGAATTAAGGGCAGAAAATGCGATTACGGAGAGTATCATTCAAACGCCA
ATGTTCCTGACCATGGACGAATTTCAGGACTCTGTATTTAAAAGGGAACT
GCAAAGTCCGACGGAGTTGGCGGTGTATGAAGCGTTATTGGAGGCCTGTC
TGGAGCAGCGGCAGTTGTTGTCGTTGACAAGGGAGGAGGAGGAGGAGATG
AGAGTGGCGAAGGCGAATCGAACCCAGGTTGGGGGAGGGAACGAAAATAC
GGAGAAAGCGCCTCGATTGCTGACACTGATGTTTAGATTGGAGAAGTTAC
GGCTGTTGGATGAGGCGATAACGAGGTTTCGAAAGTTAACGGGGAATGAG
AAACAGCTGCTGTTACCTTCGCCCACGAGTAGCAACAGTAGTAGTGTGAG
TGGTGATACTGCAGCATCAGCAGTAAGAGCAGTGGCAGCATCGAAAGAGG
CATAGATAGGAGAGAGAGAAAGAGAGGACGCGGAGGATTGGGAGTATGAC
AAGCGCATGCATCGGATACAGCGAAGATAAAAATGTAACAAATCTACCTT
AAGCGACCGAG

Coding sequence (CDS) from alignment at scaffold_7:862074..864084+

>mRNA_3181 ID=mRNA_3181|Name=jgi.p|Nanoce1779_2|669959|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_7:862074..864084+ (Nannochloropsis oceanica)
ATGCGGATGGCTTCCTGTGTATTCGTGGTAGTAGCTGTGGCGGTTCTGCT
GCCCTCGGCGTCCCAAGCCTTCCTTGTCCGCCCAATCTCCTCCACTGCAC
CATCAGCCCCTACTACAACTACAAGGCGGCACGCCGCAACGGTGGACCCA
CCCTCAAACCCAGCCGCGGCCGTGGATAAACTCCAATTGACATTTTCGGC
TGATGAGGAAGAGGCGGTGTTTTCCTTTGAGCGTCGTCTCAAGGACTCGG
GCGTGGTCGCGGAGGGGTTGGAGCACGCCCTCTTCTGGCCTGTGGATGAC
GCAGCCCCATGCCGCGGTCTCAAGACTCAAGTCGACGCCCCCCCAAATAA
AGCGCTGATTGAGCTACCAAAAGGCCAAGCTATCTGTCTAGATGAAGGAG
AGGGCACGCCATTTCCTCAATGGGTCCCGGCCAAGCAATGGAAAAAAATG
CCTTGGTACGCTCAACTCGGGCTCAAGCTTGTGTACGAACGCAAGACCTC
CACCAGTGCCCTCAAGACTGGCTACGCACAGCTTTTGCCACCCCCAAAGG
CCTTGCCAACCCCCTTTCATTGGTCTGACTTGGATCTCAATGCGCTCCGA
AGTGTTTACCCCGCACTTGCCAACAAAGTGGACAGACAACGAACAGTTTG
GGCCGGGCTTTATGACACCCTGGGGAAGACCCGGGCGGTCCGCGAGGATA
TGGACGAAGACACCTTTGTGTGGGCCATGGAAAGTGTGCTTTCTCGCGCG
TTCAAGGGGACGTTCGGTACGGGTTTTAATAGCTTAGCGCCTTCCTTATT
GTTGATGGGCATCTTTGCCGGGATTTACTATATTGACCAAGAAACGATTC
AACTCGTCAGCTACGCCTTGGAAGAATATCCGTATCTCGCAGCGATTCCA
GCGGGGTTGACGCTGTTGCCTTCTGTATTGGAGTTCTTCAAGTCTAAAGG
CACGTATGTACTGGCGCCCATGATAGATAGTTTGAATCATCGGTCAACTG
TCCCCACGGACTTGGACTACGATTCGATTCGGCAGCGGTTCAGGTTGAGT
CTGGGGGTGGGGTATCGGGCGGGGGATCAGGTGTTCATGTCATACGGGAG
TAAGACTAATGATGACTTACTGTTGCATTATGGCTTTGTTGAAGTGGACG
CCCCAAGCGACGTGTTTGAGTTCGGGGATCTGTTGACTTGGTTGGTGGAG
AAGAGGGCGGGGATCGTGAACGATGACAGGGTTCAGACATTGTTTTCAAA
GGGACTACAGGATAATGTGCGGGGGTGTAAGGTAGGCAGAAAAGGGAAGA
TTGTGGATGAGAAGGCCTTGGAGGGGTTGCGGATACTACTGGCTTCGGAT
GATGAATTAAGGGCAGAAAATGCGATTACGGAGAGTATCATTCAAACGCC
AATGTTCCTGACCATGGACGAATTTCAGGACTCTGTATTTAAAAGGGAAC
TGCAAAGTCCGACGGAGTTGGCGGTGTATGAAGCGTTATTGGAGGCCTGT
CTGGAGCAGCGGCAGTTGTTGTCGTTGACAAGGGAGGAGGAGGAGGAGAT
GAGAGTGGCGAAGGCGAATCGAACCCAGGTTGGGGGAGGGAACGAAAATA
CGGAGAAAGCGCCTCGATTGCTGACACTGATGTTTAGATTGGAGAAGTTA
CGGCTGTTGGATGAGGCGATAACGAGGTTTCGAAAGTTAACGGGGAATGA
GAAACAGCTGCTGTTACCTTCGCCCACGAGTAGCAACAGTAGTAGTGTGA
GTGGTGATACTGCAGCATCAGCAGTAAGAGCAGTGGCAGCATCGAAAGAG
GCATAG

Synonyms

Publications