jgi.p|Nanoce1779_2|553756, mRNA_3180 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553756
Unique Name	mRNA_3180
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1992
Alignment location	scaffold_7:860052..862097 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553842
Track	FilteredModels2
ProteinId	553756

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:860052..862097 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553756	gene_3180	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553756	mRNA_3180-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3180	CDS_3180	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:860052..862097-
coding sequence from alignment at scaffold_7:860052..862097-

mRNA sequence

>mRNA_3180 ID=mRNA_3180|Name=jgi.p|Nanoce1779_2|553756|organism=Nannochloropsis oceanica|type=mRNA|length=1992bp
AGGTGGCAGGGGGAAGGTCGGACCGAATAATGACTCATGATGCATTGCGT
AAGCCAAGCTCACAAGCTATCAGCCGGTGCTTTTCCGCACATTTCTCTTC
ATTCTGCTCTCAACTTCAGGTATCCGCAGCCACAGGGGAAGAGTGTGGCA
TTCCAAAATAGATACAAGGGCGGCCGCCGGCTGCACTGCAACCCTCGCTA
AGAGCCATGTTCTTCAGGGCTCTTCTTTTCCTGTTTGCCGCCTCAACCAT
GGGTTTGGGACAAAGGGTCGCCATTGTCGGAGCCGGTATTGGCGGTGCGG
CCTCGGCGTATTATATGCGGGAGGTGTTGGGTGAGCGCGCAAGCGTAGTC
ATCATTGAGAAGAGCTTGCGAGTAGGAGGCCGGGTTGAAAATGTCATATA
CACCAATGCCACGGGAGCAACATCCCCGCTGGAAATCGGGGCATCTATCC
TTTACAGCGGCAACCTGAATCTGATGACGGCTATCGGCAACCTTAAACTG
CATGCGGGACCGCCCATCTTTGACATTGACGACGGCACGACGGGCATATG
GGATGGACACTGTCTCTTGTTCCAAAGCTCGCCTTGGAACTTCGTCACTG
CCTTCCGGGTGCTGTGGCGCTATGGGTGGGGCGTCTTCAAGCTACGACGT
ATAGTCACAACAATCTTGAGCAATTTTATGAAAATATATGCCCTACAAAA
TGGTACGGTGAGTGGCAGCCGCAGCGGCGGGCTTGCTTTCGAGACGCCGG
AAGCGCTATGGGAGGCCTTGGGCCTCTTCGACCTGACACAAATCAGTCTT
CGAGATTATTTGGCGGCGCAGGGTGTGGGAGCCCCCAATTCAAAACTTAT
AACTGAGTTTGTCGGTTCTATTCAAAGAGTCAACTACAATTCGAATAACG
ACATCAATGCCTTAGCGGGACTTGTCTCCCTTTGTCCGGCCGTGACTGGT
GAGGTGGTGAGTGTGGAGGAAGGGAACGTTGCCATGGCCGTTGCAATGAT
CCAGGATGCGAAAGCAGTTTTGAAATTAAATGTCACAGTGGGGACTGTAC
AGGTTATGGGTGGTGGCGGGAGGGAAAAGAAGAGCTATAGGTTGCTACGG
GAAAACGGGCAGCCTGTAATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GTTCGATGCTGTAATTATTGCCACTCCATTTGTTTTTTCGAAGCTTGCTG
TCGTAGGGTTGGAGATCGACCAACCCGTTATCACTGACCTGCCGCCGAAT
AAATACACGACGACTCATGCCACCTTCATTCAAGGCCGTATCCGCCCGGA
CATCTTCGGTTTCTCCACTCTTGAACAAGATCGCATACCCACCTCAGTTT
ACATCAAGGAGGACGCGAGCGTACCCATCTCATCCCTTTCACTTCACATC
ACGCTTAATGCCACGGATGGTACGGGCATATATAAATTGTTTAGCTCAGG
TTTGCTCGAGTCCTCTTTTATCGACACAGTCTTCTTTTCTGGATGGGAAG
AGCTCCACCACCGCAAGTGGCAGGCCTATCCCTCTTATCAACCTCCTGAA
AAAATGACCCCCTTTCTGATACAGCCGGGGGAAAGAATCTGCTATGTAAA
CGCACTGGAAACAGGTGTGAGTGCGATGGAAATCTCTGCTATAGGTGCAA
AAAACTGCGCACTTCTCCTGGCAGAAAGCTTCCGAAGAGAAATGGACAGA
GGAATCGGGACGACAGCAATGGAGGGACATGAAACGGAGAAAGAGGAATT
GTAGTTTTGAAGGCGAAGGAGCCTGCTTAATGCAGCTATGTACAGGGTTG
CTGTGGTAGTGATACAACATGTAGCTTGCTAAAACAATGACTGTGTGACA
AATAAATCAATGCAAAAAAAAAATCTCAACTCAATACTTAATACCTCATC
GGTTTTCCCTCCCTCTTCGGGATCCTCGCGTCTCATTTTAGAGACATACA
CAGATGGGCCGGAACGTGAGTCACGCCCAGGTCCGTGTGCTT

protein sequence of jgi.p|Nanoce1779_2|553756

>mRNA_3180-protein ID=mRNA_3180-protein|Name=jgi.p|Nanoce1779_2|553756|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MFFRALLFLFAASTMGLGQRVAIVGAGIGGAASAYYMREVLGERASVVII
EKSLRVGGRVENVIYTNATGATSPLEIGASILYSGNLNLMTAIGNLKLHA
GPPIFDIDDGTTGIWDGHCLLFQSSPWNFVTAFRVLWRYGWGVFKLRRIV
TTILSNFMKIYALQNGTVSGSRSGGLAFETPEALWEALGLFDLTQISLRD
YLAAQGVGAPNSKLITEFVGSIQRVNYNSNNDINALAGLVSLCPAVTGEV
VSVEEGNVAMAVAMIQDAKAVLKLNVTVGTVQVMGGGGREKKSYRLLREN
GQPVMEEEEEEEEEEFDAVIIATPFVFSKLAVVGLEIDQPVITDLPPNKY
TTTHATFIQGRIRPDIFGFSTLEQDRIPTSVYIKEDASVPISSLSLHITL
NATDGTGIYKLFSSGLLESSFIDTVFFSGWEELHHRKWQAYPSYQPPEKM
TPFLIQPGERICYVNALETGVSAMEISAIGAKNCALLLAESFRREMDRGI
GTTAMEGHETEKEEL*

mRNA from alignment at scaffold_7:860052..862097-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3180 ID=mRNA_3180|Name=jgi.p|Nanoce1779_2|553756|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp|location=Sequence derived from alignment at scaffold_7:860052..862097- (Nannochloropsis oceanica)
AGGTGGCAGGGGGAAGGTCGGACCGAATAATGACTCATGATGCATTGCGT
AAGCCAAGCTCACAAGCTATCAGCCGGTGCTTTTCCGCACATTTCTCTTC
ATTCTGCTCTCAACTTCAGGTATCCGCAGCCACAGGGGAAGAGTGTGGCA
TTCCAAAATAGATACAAGGGCGGCCGCCGGCTGCACTGCAACCCTCGCTA
AGAGCCATGTTCTTCAGGGCTCTTCTTTTCCTGTTTGCCGCCTCAACCAT
GGGTTTGGGACAAAGGGTCGCCATTGTCGGAGCCGGTATTGGCGGTGCGG
CCTCGGCGTATTATATGCGGGAGGTGTTGGGTGAGCGCGCAAGCGTAGTC
ATCATTGAGAAGAGCTTGCGAGTAGGAGGCCGGGTTGAAAATGTCATATA
CACCAATGCCACGGGAGCAACATCCCCGCTGGAAATCGGGGCATCTATCC
TTTACAGCGGCAACCTGAATCTGATGACGGCTATCGGCAACCTTAAACTG
CATGCGGGACCGCCCATCTTTGACATTGACGACGGCACGACGGGCATATG
GGATGGACACTGTCTCTTGTTCCAAAGCTCGCCTTGGAACTTCGTCACTG
CCTTCCGGGTGCTGTGGCGCTATGGGTGGGGCGTCTTCAAGCTACGACGT
ATAGTCACAACAATCTTGAGCAATTTTATGAAAATATATGCCCTACAAAA
TGGTACGGTGAGTGGCAGCCGCAGCGGCGGGCTTGCTTTCGAGACGCCGG
AAGCGCTATGGGAGGCCTTGGGCCTCTTCGACCTGACACAAATCAGTCTT
CGAGATTATTTGGCGGCGCAGGGTGTGGGAGCCCCCAATTCAAAACTTAT
AACTGAGTTTGTCGGTTCTATTCAAAGAGTCAACTACAATTCGAATAACG
ACATCAATGCCTTAGCGGGACTTGTCTCCCTTTGTCCGGCCGTGACTGGT
GAGGTGGTGAGTGTGGAGGAAGGGAACGTTGCCATGGCCGTTGCAATGAT
CCAGGATGCGAAAGCAGTTTTGAAATTAAATGTCACAGTGGGGACTGTAC
AGGTTATGGGTGGTGGCGGGAGGGAAAAGAAGAGCTATAGGTTGCTACGG
GAAAACGGGCAGCCTGTAATGGTAAGGCATAAAGGAGAGAAGAAGAAGAA
GAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGTTCGATGCTGTAATTATTGCCACTCCATTTGTTTTTTCGAAGCTT
GCTGTCGTAGGGTTGGAGATCGACCAACCCGTTATCACTGACCTGCCGCC
GAATAAATACACGACGACTCATGCCACCTTCATTCAAGGCCGTATCCGCC
CGGACATCTTCGGTTTCTCCACTCTTGAACAAGATCGCATACCCACCTCA
GTTTACATCAAGGAGGACGCGAGCGTACCCATCTCATCCCTTTCACTTCA
CATCACGCTTAATGCCACGGATGGTACGGGCATATATAAATTGTTTAGCT
CAGGTTTGCTCGAGTCCTCTTTTATCGACACAGTCTTCTTTTCTGGATGG
GAAGAGCTCCACCACCGCAAGTGGCAGGCCTATCCCTCTTATCAACCTCC
TGAAAAAATGACCCCCTTTCTGATACAGCCGGGGGAAAGAATCTGCTATG
TAAACGCACTGGAAACAGGTGTGAGTGCGATGGAAATCTCTGCTATAGGT
GCAAAAAACTGCGCACTTCTCCTGGCAGAAAGCTTCCGAAGAGAAATGGA
CAGAGGAATCGGGACGACAGCAATGGAGGGACATGAAACGGAGAAAGAGG
AATTGTAGTTTTGAAGGCGAAGGAGCCTGCTTAATGCAGCTATGTACAGG
GTTGCTGTGGTAGTGATACAACATGTAGCTTGCTAAAACAATGACTGTGT
GACAAATAAATCAATGCAAAAAAAAAATCTCAACTCAATACTTAATACCT
CATCGGTTTTCCCTCCCTCTTCGGGATCCTCGCGTCTCATTTTAGAGACA
TACACAGATGGGCCGGAACGTGAGTCACGCCCAGGTCCGTGTGCTT

Coding sequence (CDS) from alignment at scaffold_7:860052..862097-

>mRNA_3180 ID=mRNA_3180|Name=jgi.p|Nanoce1779_2|553756|organism=Nannochloropsis oceanica|type=CDS|length=3096bp|location=Sequence derived from alignment at scaffold_7:860052..862097- (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTCGATGCTGTAATTATTGC
CACTCCATTTGTTTTTTCGAAGCTTGCTGTCGTAGGGTTGGAGATCGACC
AACCCGTTATCACTGACCTGCCGCCGAATAAATACACGACGACTCATGCC
ACCTTCATTCAAGGCCGTATCCGCCCGGACATCTTCGGTTTCTCCACTCT
TGAACAAGATCGCATACCCACCTCAGTTTACATCAAGGAGGACGCGAGCG
TACCCATCTCATCCCTTTCACTTCACATCACGCTTAATGCCACGGATGGT
ACGGGCATATATAAATTGTTTAGCTCAGGTTTGCTCGAGTCCTCTTTTAT
CGACACAGTCTTCTTTTCTGGATGGGAAGAGCTCCACCACCGCAAGTGGC
AGGCCTATCCCTCTTATCAACCTCCTGAAAAAATGACCCCCTTTCTGATA
CAGCCGGGGGAAAGAATCTGCTATGTAAACGCACTGGAAACAGGTGTGAG
TGCGATGGAAATCTCTGCTATAGGTGCAAAAAACTGCGCACTTCTCCTGG
CAGAAAGCTTCCGAAGAGAAATGGACAGAGGAATCGGGACGACAGCAATG
GAGGGACATGAAACGGAGAAAGAGGAATTGTAGATGTTCTTCAGGGCTCT
TCTTTTCCTGTTTGCCGCCTCAACCATGGGTTTGGGACAAAGGGTCGCCA
TTGTCGGAGCCGGTATTGGCGGTGCGGCCTCGGCGTATTATATGCGGGAG
GTGTTGGGTGAGCGCGCAAGCGTAGTCATCATTGAGAAGAGCTTGCGAGT
AGGAGGCCGGGTTGAAAATGTCATATACACCAATGCCACGGGAGCAACAT
CCCCGCTGGAAATCGGGGCATCTATCCTTTACAGCGGCAACCTGAATCTG
ATGACGGCTATCGGCAACCTTAAACTGCATGCGGGACCGCCCATCTTTGA
CATTGACGACGGCACGACGGGCATATGGGATGGACACTGTCTCTTGTTCC
AAAGCTCGCCTTGGAACTTCGTCACTGCCTTCCGGGTGCTGTGGCGCTAT
GGGTGGGGCGTCTTCAAGCTACGACGTATAGTCACAACAATCTTGAGCAA
TTTTATGAAAATATATGCCCTACAAAATGGTACGGTGAGTGGCAGCCGCA
GCGGCGGGCTTGCTTTCGAGACGCCGGAAGCGCTATGGGAGGCCTTGGGC
CTCTTCGACCTGACACAAATCAGTCTTCGAGATTATTTGGCGGCGCAGGG
TGTGGGAGCCCCCAATTCAAAACTTATAACTGAGTTTGTCGGTTCTATTC
AAAGAGTCAACTACAATTCGAATAACGACATCAATGCCTTAGCGGGACTT
GTCTCCCTTTGTCCGGCCGTGACTGGTGAGGTGGTGAGTGTGGAGGAAGG
GAACGTTGCCATGGCCGTTGCAATGATCCAGGATGCGAAAGCAGTTTTGA
AATTAAATGTCACAGTGGGGACTGTACAGGTTATGGGTGGTGGCGGGAGG
GAAAAGAAGAGCTATAGGTTGCTACGGGAAAACGGGCAGCCTGTAATGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGTTCGATGCTGTAATTATTGCCA
CTCCATTTGTTTTTTCGAAGCTTGCTGTCGTAGGGTTGGAGATCGACCAA
CCCGTTATCACTGACCTGCCGCCGAATAAATACACGACGACTCATGCCAC
CTTCATTCAAGGCCGTATCCGCCCGGACATCTTCGGTTTCTCCACTCTTG
AACAAGATCGCATACCCACCTCAGTTTACATCAAGGAGGACGCGAGCGTA
CCCATCTCATCCCTTTCACTTCACATCACGCTTAATGCCACGGATGGTAC
GGGCATATATAAATTGTTTAGCTCAGGTTTGCTCGAGTCCTCTTTTATCG
ACACAGTCTTCTTTTCTGGATGGGAAGAGCTCCACCACCGCAAGTGGCAG
GCCTATCCCTCTTATCAACCTCCTGAAAAAATGACCCCCTTTCTGATACA
GCCGGGGGAAAGAATCTGCTATGTAAACGCACTGGAAACAGGTGTGAGTG
CGATGGAAATCTCTGCTATAGGTGCAAAAAACTGCGCACTTCTCCTGGCA
GAAAGCTTCCGAAGAGAAATGGACAGAGGAATCGGGACGACAGCAATGGA
GGGACATGAAACGGAGAAAGAGGAATTGTAGATGTTCTTCAGGGCTCTTC
TTTTCCTGTTTGCCGCCTCAACCATGGGTTTGGGACAAAGGGTCGCCATT
GTCGGAGCCGGTATTGGCGGTGCGGCCTCGGCGTATTATATGCGGGAGGT
GTTGGGTGAGCGCGCAAGCGTAGTCATCATTGAGAAGAGCTTGCGAGTAG
GAGGCCGGGTTGAAAATGTCATATACACCAATGCCACGGGAGCAACATCC
CCGCTGGAAATCGGGGCATCTATCCTTTACAGCGGCAACCTGAATCTGAT
GACGGCTATCGGCAACCTTAAACTGCATGCGGGACCGCCCATCTTTGACA
TTGACGACGGCACGACGGGCATATGGGATGGACACTGTCTCTTGTTCCAA
AGCTCGCCTTGGAACTTCGTCACTGCCTTCCGGGTGCTGTGGCGCTATGG
GTGGGGCGTCTTCAAGCTACGACGTATAGTCACAACAATCTTGAGCAATT
TTATGAAAATATATGCCCTACAAAATGGTACGGTGAGTGGCAGCCGCAGC
GGCGGGCTTGCTTTCGAGACGCCGGAAGCGCTATGGGAGGCCTTGGGCCT
CTTCGACCTGACACAAATCAGTCTTCGAGATTATTTGGCGGCGCAGGGTG
TGGGAGCCCCCAATTCAAAACTTATAACTGAGTTTGTCGGTTCTATTCAA
AGAGTCAACTACAATTCGAATAACGACATCAATGCCTTAGCGGGACTTGT
CTCCCTTTGTCCGGCCGTGACTGGTGAGGTGGTGAGTGTGGAGGAAGGGA
ACGTTGCCATGGCCGTTGCAATGATCCAGGATGCGAAAGCAGTTTTGAAA
TTAAATGTCACAGTGGGGACTGTACAGGTTATGGGTGGTGGCGGGAGGGA
AAAGAAGAGCTATAGGTTGCTACGGGAAAACGGGCAGCCTGTAATG

Synonyms

Publications