jgi.p|Nanoce1779_2|576938, mRNA_318 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576938
Unique NamemRNA_318
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1596
Alignment locationscaffold_3:788426..790211 -

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Properties
Property NameValue
TranscriptId577024
TrackFilteredModels2
ProteinId576938
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:788426..790211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576938gene_318Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576938mRNA_318-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_318CDS_318Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_318 ID=mRNA_318|Name=jgi.p|Nanoce1779_2|576938|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp
ACAGCGTATAGCCATGAAGGTCTTGTCTTCTTTAATTCTGACCTCCGTGG
TCGTCTCCTGCTCCGCTTTTGTCTCCCTGAACCCCAAGGTACGTCGCTAC
ACTCACTCTCTCTGTGCTCCCTCCATCTTGCCCTGCTAACGCCGCAGCCT
TCCTTCGTGCCCACACCGTCTGCTTTCCACCGAAGCTCAACAGCATCCCC
CTCAAGACCCGCGCTCGTCATGCGGCCTTGAACATGGTCAGCCGTGCGGA
GAAGGAGAACCCATATATGGAGGAGCTAAAGGCCAATGCCAAGAAGATCG
GGGGGCGAGGCCGAGGTATTCTGGCCAGTGACGAGAGTAACGCCACTACG
GGCATCCGTTTGGGGTCCATTGGCGTGGAGAACACGGAAGAGAATCGCCG
CAAGTGGCGTGAGCTTTTGTACACGGCCCCCGGTTTGGGTGAATATATTT
CGGGGGCAATCATGTTTGACGAGACACTCTACCAAAAAACCTCGGAGGGC
AAGCCGTTCGTGGACGTGCTCCGCGAGCAGAACATCCTTCCGGGCATCAA
GGTAGATACGGGCCTGCAAAATATGTTTGGCACGGATGGGGAGACGGCGA
CGCAGGGATTAGATGGTCTTGGTGATCGATGCAAGGCCTACTACAAGCAG
GGCGCTCGTTTCGCCAAGTGGCGTGCCGTCCTCAAGTGCGACGAGAAGGA
CTTACCCAGCGAGAAGGCCATCTGGGAGAATGCCCATGCCTTGGCCAGGT
ACGCCGCCATCGCACAAGAAAACGGCCTGGTCCCCATTGTCGAGCCCGAG
GTCACCTTGGGCCCCGGCACTTACTCCATTGAGCGCACTGCCTTTATCTC
CGAGCGTGTCAACTCCATCACCATGAACTGGCTCAACCGTTACGACGTGG
TCTTGGATGCGATCCTTCTGAAACCGAACATGATTCTGCCTGGTCTTGAT
GCCCCGATGGCAAGCAAGGAGGAAGTTGCAAAGTACACCGTGCAGGTAAT
GAAGCGCACCATTCCCCCCGCCGTCCCCTCCATCCATTTCCTCTCCGGAG
GCATGGGCGAGGAAGAGGCCACCCTGAATCTGCAGCAACTGCAGAAGGAG
TACCCTGACGCGCCTTGGAGCTTGACCTTTTCCTATGGCCGTGCTTTGCA
GTCAAGCACGCTCAAGACCTGGGGTGGAAAGCCGGAGAACTGGAAGGCGG
CACAGGATATTCTTGTGAAGCTCGCGCAGGCCAACAGCCAGGCTCAGCTT
GGAAAGTTTGTCGAGGGGACTCACCCTGCCCCTGGTGGGGGGCGTATTCT
GCAGGCCCTACGTTTGGGAGGGGCAGGGAAGTAAGTGGTGAATGACGGTG
AGTTCGAAGTAAGGAGGGAGATTAGAGAGTTCATGTGCGTGACGAATGGT
GTGGGTCATCAATACAATCAAAACATGAGCGGAGAAGAAGAGTCAAGGAT
ATGTAGTGCTTTTTTACGAAACAGCAGCGGCAGGAGTGGCAGCAGTAGCA
GCAGTAATAGTCACCTTGAACCGGTCCCGACGAGTGAGTAGAGTGGGAGC
GTCCGTAAGAAGCAAACAAAAAGAAAAAAGGCAAGGGAAGAAATGA
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protein sequence of jgi.p|Nanoce1779_2|576938

>mRNA_318-protein ID=mRNA_318-protein|Name=jgi.p|Nanoce1779_2|576938|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MVSRAEKENPYMEELKANAKKIGGRGRGILASDESNATTGIRLGSIGVEN
TEENRRKWRELLYTAPGLGEYISGAIMFDETLYQKTSEGKPFVDVLREQN
ILPGIKVDTGLQNMFGTDGETATQGLDGLGDRCKAYYKQGARFAKWRAVL
KCDEKDLPSEKAIWENAHALARYAAIAQENGLVPIVEPEVTLGPGTYSIE
RTAFISERVNSITMNWLNRYDVVLDAILLKPNMILPGLDAPMASKEEVAK
YTVQVMKRTIPPAVPSIHFLSGGMGEEEATLNLQQLQKEYPDAPWSLTFS
YGRALQSSTLKTWGGKPENWKAAQDILVKLAQANSQAQLGKFVEGTHPAP
GGGRILQALRLGGAGK*
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mRNA from alignment at scaffold_3:788426..790211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_318 ID=mRNA_318|Name=jgi.p|Nanoce1779_2|576938|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp|location=Sequence derived from alignment at scaffold_3:788426..790211- (Nannochloropsis oceanica)
ACAGCGTATAGCCATGAAGGTCTTGTCTTCTTTAATTCTGACCTCCGTGG
TCGTCTCCTGCTCCGCTTTTGTCTCCCTGAACCCCAAGGTACGTCGCTAC
ACTCACTCTCTCTGTGCTCCCTCCATCTTGCCCTGCTAACGCCGCAGCCT
TCCTTCGTGCCCACACCGTCTGCTTTCCACCGAAGCTCAACAGCATCCCC
CTCAAGACCCGCGCTCGTCATGCGGCCTTGAACATGGTCAGCCGTGCGGA
GAAGGAGAACCCATATATGGAGGAGCTAAAGGCCAATGCCAAGAAGATCG
GGGGGCGAGGCCGAGGTATTCTGGCCAGTGACGAGAGTAACGCCACTACG
GGCATCCGTTTGGGGTCCATTGGCGTGGAGAACACGGAAGAGAATCGCCG
CAAGTGGCGTGAGCTTTTGTACACGGCCCCCGGTTTGGGTGAATATATTT
CGGGGGCAATCATGTTTGACGAGACACTCTACCAAAAAACCTCGGAGGGC
AAGCCGTTCGTGGACGTGCTCCGCGAGCAGAACATCCTTCCGGGCATCAA
GGTAGATACGGGCCTGCAAAATATGTTTGGCACGGATGGGGAGACGGCGA
CGCAGGGATTAGATGGTCTTGGTGATCGATGCAAGGCCTACTACAAGCAG
GGCGCTCGTTTCGGTACGTCAAGTAAAGAGGGTAAACTGAAAGGTTGAGC
TCATGGTGGTGAAAAAGCTTCTGATCTGGTAGAACAATCATCATTGTCGT
GATTTCTAGATGCCCTTTATGTGCTCTGAACACGCGTGCCTGTTACTCTT
TTCTCGCCCAACACACCTCTTCTCTCCAACCTCCAACCACCAAAACCAAA
CAGCCAAGTGGCGTGCCGTCCTCAAGTGCGACGAGAAGGACTTACCCAGC
GAGAAGGCCATCTGGGAGAATGCCCATGCCTTGGCCAGGTACGCCGCCAT
CGCACAAGAAAACGGCCTGGTCCCCATTGTCGAGCCCGAGGTCACCTTGG
GCCCCGGCACTTACTCCATTGAGCGCACTGCCTTTATCTCCGAGCGTGTC
AACTCCATCACCATGAACTGGCTCAACCGTTACGACGTGGTCTTGGATGC
GATCCTTCTGAAACCGAACATGATTCTGCCTGGTCTTGATGCCCCGATGG
CAAGCAAGGAGGAAGTTGCAAAGTACACCGTGCAGGTAATGAAGCGCACC
ATTCCCCCCGCCGTCCCCTCCATCCATTTCCTCTCCGGAGGCATGGGCGA
GGAAGAGGCCACCCTGAATCTGCAGCAACTGCAGAAGGAGTACCCTGACG
CGCCTTGGAGCTTGACCTTTTCCTATGGCCGTGCTTTGCAGTCAAGCACG
CTCAAGACCTGGGGTGGAAAGCCGGAGAACTGGAAGGCGGCACAGGATAT
TCTTGTGAAGCTCGCGCAGGCCAACAGCCAGGCTCAGCTTGGAAAGTTTG
TCGAGGGGACTCACCCTGCCCCTGGTGGGGGGCGTATTCTGCAGGCCCTA
CGTTTGGGAGGGGCAGGGAAGTAAGTGGTGAATGACGGTGAGTTCGAAGT
AAGGAGGGAGATTAGAGAGTTCATGTGCGTGACGAATGGTGTGGGTCATC
AATACAATCAAAACATGAGCGGAGAAGAAGAGTCAAGGATATGTAGTGCT
TTTTTACGAAACAGCAGCGGCAGGAGTGGCAGCAGTAGCAGCAGTAATAG
TCACCTTGAACCGGTCCCGACGAGTGAGTAGAGTGGGAGCGTCCGTAAGA
AGCAAACAAAAAGAAAAAAGGCAAGGGAAGAAATGA
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Coding sequence (CDS) from alignment at scaffold_3:788426..790211-

>mRNA_318 ID=mRNA_318|Name=jgi.p|Nanoce1779_2|576938|organism=Nannochloropsis oceanica|type=CDS|length=2202bp|location=Sequence derived from alignment at scaffold_3:788426..790211- (Nannochloropsis oceanica)
CCAAGTGGCGTGCCGTCCTCAAGTGCGACGAGAAGGACTTACCCAGCGAG
AAGGCCATCTGGGAGAATGCCCATGCCTTGGCCAGGTACGCCGCCATCGC
ACAAGAAAACGGCCTGGTCCCCATTGTCGAGCCCGAGGTCACCTTGGGCC
CCGGCACTTACTCCATTGAGCGCACTGCCTTTATCTCCGAGCGTGTCAAC
TCCATCACCATGAACTGGCTCAACCGTTACGACGTGGTCTTGGATGCGAT
CCTTCTGAAACCGAACATGATTCTGCCTGGTCTTGATGCCCCGATGGCAA
GCAAGGAGGAAGTTGCAAAGTACACCGTGCAGGTAATGAAGCGCACCATT
CCCCCCGCCGTCCCCTCCATCCATTTCCTCTCCGGAGGCATGGGCGAGGA
AGAGGCCACCCTGAATCTGCAGCAACTGCAGAAGGAGTACCCTGACGCGC
CTTGGAGCTTGACCTTTTCCTATGGCCGTGCTTTGCAGTCAAGCACGCTC
AAGACCTGGGGTGGAAAGCCGGAGAACTGGAAGGCGGCACAGGATATTCT
TGTGAAGCTCGCGCAGGCCAACAGCCAGGCTCAGCTTGGAAAGTTTGTCG
AGGGGACTCACCCTGCCCCTGGTGGGGGGCGTATTCTGCAGGCCCTACGT
TTGGGAGGGGCAGGGAAGTAAATGGTCAGCCGTGCGGAGAAGGAGAACCC
ATATATGGAGGAGCTAAAGGCCAATGCCAAGAAGATCGGGGGGCGAGGCC
GAGGTATTCTGGCCAGTGACGAGAGTAACGCCACTACGGGCATCCGTTTG
GGGTCCATTGGCGTGGAGAACACGGAAGAGAATCGCCGCAAGTGGCGTGA
GCTTTTGTACACGGCCCCCGGTTTGGGTGAATATATTTCGGGGGCAATCA
TGTTTGACGAGACACTCTACCAAAAAACCTCGGAGGGCAAGCCGTTCGTG
GACGTGCTCCGCGAGCAGAACATCCTTCCGGGCATCAAGGTAGATACGGG
CCTGCAAAATATGTTTGGCACGGATGGGGAGACGGCGACGCAGGGATTAG
ATGGTCTTGGTGATCGATGCAAGGCCTACTACAAGCAGGGCGCTCGTTTC
GCCAAGTGGCGTGCCGTCCTCAAGTGCGACGAGAAGGACTTACCCAGCGA
GAAGGCCATCTGGGAGAATGCCCATGCCTTGGCCAGGTACGCCGCCATCG
CACAAGAAAACGGCCTGGTCCCCATTGTCGAGCCCGAGGTCACCTTGGGC
CCCGGCACTTACTCCATTGAGCGCACTGCCTTTATCTCCGAGCGTGTCAA
CTCCATCACCATGAACTGGCTCAACCGTTACGACGTGGTCTTGGATGCGA
TCCTTCTGAAACCGAACATGATTCTGCCTGGTCTTGATGCCCCGATGGCA
AGCAAGGAGGAAGTTGCAAAGTACACCGTGCAGGTAATGAAGCGCACCAT
TCCCCCCGCCGTCCCCTCCATCCATTTCCTCTCCGGAGGCATGGGCGAGG
AAGAGGCCACCCTGAATCTGCAGCAACTGCAGAAGGAGTACCCTGACGCG
CCTTGGAGCTTGACCTTTTCCTATGGCCGTGCTTTGCAGTCAAGCACGCT
CAAGACCTGGGGTGGAAAGCCGGAGAACTGGAAGGCGGCACAGGATATTC
TTGTGAAGCTCGCGCAGGCCAACAGCCAGGCTCAGCTTGGAAAGTTTGTC
GAGGGGACTCACCCTGCCCCTGGTGGGGGGCGTATTCTGCAGGCCCTACG
TTTGGGAGGGGCAGGGAAGTAAATGGTCAGCCGTGCGGAGAAGGAGAACC
CATATATGGAGGAGCTAAAGGCCAATGCCAAGAAGATCGGGGGGCGAGGC
CGAGGTATTCTGGCCAGTGACGAGAGTAACGCCACTACGGGCATCCGTTT
GGGGTCCATTGGCGTGGAGAACACGGAAGAGAATCGCCGCAAGTGGCGTG
AGCTTTTGTACACGGCCCCCGGTTTGGGTGAATATATTTCGGGGGCAATC
ATGTTTGACGAGACACTCTACCAAAAAACCTCGGAGGGCAAGCCGTTCGT
GGACGTGCTCCGCGAGCAGAACATCCTTCCGGGCATCAAGGTAGATACGG
GCCTGCAAAATATGTTTGGCACGGATGGGGAGACGGCGACGCAGGGATTA
GATGGTCTTGGTGATCGATGCAAGGCCTACTACAAGCAGGGCGCTCGTTT
CG
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Synonyms
Publications