jgi.p|Nanoce1779_2|526499, mRNA_3178 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526499
Unique NamemRNA_3178
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length591
Alignment locationscaffold_7:858591..859288 -

Link to JBrowse

Properties
Property NameValue
TranscriptId526585
TrackFilteredModels2
ProteinId526499
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:858591..859288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526499gene_3178Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526499mRNA_3178-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3178CDS_3178Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3178 ID=mRNA_3178|Name=jgi.p|Nanoce1779_2|526499|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
ATGAAAAGCTTCTTTCAATCGCTTCGAAGCTGGACATCCTTCAAGCTTTA
CTGTTGTGGTGTGCGGGATCTGATTTTTATCGCGCGGCCCCTTGAAACTT
TTCTCTTGCGCACGGGCACGATTCACGATAGGGATTTGAGTCGCTTTATT
GCTCGTGCCATTGCCTTGGTGGCTTTTACCATGATTATCACCTCTATTTT
GGGCACGCTGGGTCTCGACACGAAGCCCATCATTGCTGGTCTGGGAGTTT
CGGGATTTATCGTCGGTTTTGCTCTCAAAGAGATTGCCACCAATGTCCTT
TCTGGGATCCTGCTTGTCTTCCAACGGCCCTTTCGCACAGGGTGGAAAAT
CAAGGTCGGTTCCTACCAAGGCACTGTCCTGTCGGTCGACTCGCGCTATG
TCCGTTTACTCACGGACGAGGACGCGATGATTCTCGTGCCAGCGTATCAG
GTCTACACGCAGGCAATCACTGTTTTGGAGCGAAAGGATAAGTCTGGGAG
GGTCATCCACACATCGGGCACGACGGCCGGAGCGGCAGCGACGACGGCTG
CGGCTGCCGGGAAGGTTGCCAGCACGCCGCCATCGAGATAA
back to top

protein sequence of jgi.p|Nanoce1779_2|526499

>mRNA_3178-protein ID=mRNA_3178-protein|Name=jgi.p|Nanoce1779_2|526499|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MKSFFQSLRSWTSFKLYCCGVRDLIFIARPLETFLLRTGTIHDRDLSRFI
ARAIALVAFTMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVL
SGILLVFQRPFRTGWKIKVGSYQGTVLSVDSRYVRLLTDEDAMILVPAYQ
VYTQAITVLERKDKSGRVIHTSGTTAGAAATTAAAAGKVASTPPSR*
back to top

mRNA from alignment at scaffold_7:858591..859288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3178 ID=mRNA_3178|Name=jgi.p|Nanoce1779_2|526499|organism=Nannochloropsis oceanica|type=mRNA|length=698bp|location=Sequence derived from alignment at scaffold_7:858591..859288- (Nannochloropsis oceanica)
ATGAAAAGCTTCTTTCAATCGCTTCGAAGCTGGACATCCTTCAAGCTTTA
CTGTTGTGGTGTGCGGGATCTGATTTTTATCGCGCGGCCCCTTGAAACTT
TTCTCTTGCGCACGGGCACGATTCACGATAGGGATTTGAGTCGCTTTATT
GCTCGTGCCATTGCCTTGGTGGCTTTTACCATGATTATCACCTCTATTTT
GGGCACGCTGGGTCTCGACACGAAGCCCATCATTGCTGGTCTGGGAGTTT
CGGGATTTATCGGTACGCTTCGCATTGTTGAGTTAGGCCCATGGATTTTT
AATATTTTCCCACAAGCTTAGTTTCTCTTCTTTCTACCCTCCTACATCCG
TCCTTTCTCTCACAAACAGTCGGTTTTGCTCTCAAAGAGATTGCCACCAA
TGTCCTTTCTGGGATCCTGCTTGTCTTCCAACGGCCCTTTCGCACAGGGT
GGAAAATCAAGGTCGGTTCCTACCAAGGCACTGTCCTGTCGGTCGACTCG
CGCTATGTCCGTTTACTCACGGACGAGGACGCGATGATTCTCGTGCCAGC
GTATCAGGTCTACACGCAGGCAATCACTGTTTTGGAGCGAAAGGATAAGT
CTGGGAGGGTCATCCACACATCGGGCACGACGGCCGGAGCGGCAGCGACG
ACGGCTGCGGCTGCCGGGAAGGTTGCCAGCACGCCGCCATCGAGATAA
back to top

Coding sequence (CDS) from alignment at scaffold_7:858591..859288-

>mRNA_3178 ID=mRNA_3178|Name=jgi.p|Nanoce1779_2|526499|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_7:858591..859288- (Nannochloropsis oceanica)
TCGGTTTTGCTCTCAAAGAGATTGCCACCAATGTCCTTTCTGGGATCCTG
CTTGTCTTCCAACGGCCCTTTCGCACAGGGTGGAAAATCAAGGTCGGTTC
CTACCAAGGCACTGTCCTGTCGGTCGACTCGCGCTATGTCCGTTTACTCA
CGGACGAGGACGCGATGATTCTCGTGCCAGCGTATCAGGTCTACACGCAG
GCAATCACTGTTTTGGAGCGAAAGGATAAGTCTGGGAGGGTCATCCACAC
ATCGGGCACGACGGCCGGAGCGGCAGCGACGACGGCTGCGGCTGCCGGGA
AGGTTGCCAGCACGCCGCCATCGAGATAAATGAAAAGCTTCTTTCAATCG
CTTCGAAGCTGGACATCCTTCAAGCTTTACTGTTGTGGTGTGCGGGATCT
GATTTTTATCGCGCGGCCCCTTGAAACTTTTCTCTTGCGCACGGGCACGA
TTCACGATAGGGATTTGAGTCGCTTTATTGCTCGTGCCATTGCCTTGGTG
GCTTTTACCATGATTATCACCTCTATTTTGGGCACGCTGGGTCTCGACAC
GAAGCCCATCATTGCTGGTCTGGGAGTTTCGGGATTTATCGTCGGTTTTG
CTCTCAAAGAGATTGCCACCAATGTCCTTTCTGGGATCCTGCTTGTCTTC
CAACGGCCCTTTCGCACAGGGTGGAAAATCAAGGTCGGTTCCTACCAAGG
CACTGTCCTGTCGGTCGACTCGCGCTATGTCCGTTTACTCACGGACGAGG
ACGCGATGATTCTCGTGCCAGCGTATCAGGTCTACACGCAGGCAATCACT
GTTTTGGAGCGAAAGGATAAGTCTGGGAGGGTCATCCACACATCGGGCAC
GACGGCCGGAGCGGCAGCGACGACGGCTGCGGCTGCCGGGAAGGTTGCCA
GCACGCCGCCATCGAGATAAATGAAAAGCTTCTTTCAATCGCTTCGAAGC
TGGACATCCTTCAAGCTTTACTGTTGTGGTGTGCGGGATCTGATTTTTAT
CGCGCGGCCCCTTGAAACTTTTCTCTTGCGCACGGGCACGATTCACGATA
GGGATTTGAGTCGCTTTATTGCTCGTGCCATTGCCTTGGTGGCTTTTACC
ATGATTATCACCTCTATTTTGGGCACGCTGGGTCTCGACACGAAGCCCAT
CATTGCTGGTCTGGGAGTTTCGGGATTTATCG
back to top
Synonyms
Publications