jgi.p|Nanoce1779_2|622982, mRNA_3176 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622982
Unique Name	mRNA_3176
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	759
Alignment location	scaffold_7:854864..856175 +

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Properties


Property Name	Value
TranscriptId	623068
Track	FilteredModels2
ProteinId	622982

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:854864..856175 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622982	gene_3176	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622982	mRNA_3176-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3176	CDS_3176	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:854864..856175+
coding sequence from alignment at scaffold_7:854864..856175+

mRNA sequence

>mRNA_3176 ID=mRNA_3176|Name=jgi.p|Nanoce1779_2|622982|organism=Nannochloropsis oceanica|type=mRNA|length=759bp
ATGTACGAGCAGCTCTTGCTAGGAATCATCCGCCCTCCACGGCTGGGTTA
TGAATTCCCTCATGCCTTGGGACCTGTCACGCTCTCCTTCTCTGATGGCA
CAGTGTGTCACAGAACCGACTTTGATGTGGAGAATGGTCGAAATCAAAAA
TTGGGATGTAGTTTGTGGCAACCGGCAGGGGCGGAGACGCAGGACGGATG
GCCCTGCGTCATTTTTTTGCACGGAAATTCGAGCAGTCGCGTGGAGGCGG
TGAAAACAAATGTGTTGAAATCCGTGATGGCAAGCGGCTCAGCCCTCGTT
GGCTTTGACTTTACTGGGTGTGGCAACGCCGACGGAGAATATATCTCCTT
AGGTTGGTTCGAGGTACACGACACACGCCAGGTGATAGACGAGCTCCGAC
GAAGAGGCTGTGGCCGCATAGTCCTCCATGGGCGTTCCATGGGCGCTGTG
ACGGCTTTACAGTACACCATTCAAGCATTCCTCGACTCGCCATTTTCAGG
GTTCAAAAAGCTTGCCTACGATCTCACCAGCAAGGGCATGGTCCACATCC
CTCATTTCGCCACCGCCGCCGTCCTGTCCCTCCTGCGTCGCTCCGTCCGT
TCTCGTGCCGGCTTTGATTTATTTAAGCTCAAGCCTATTAAGCATGTACA
CCACTGCACAACTGTCCCAGCTCTTTTCCTAGTAGCAGAAGACGATGAGT
TAATTCCTCCCTGGCACGCCGAGGGTCTGCGAAAGCAGGACGTCTCAAAC
GCATCATAA

protein sequence of jgi.p|Nanoce1779_2|622982

>mRNA_3176-protein ID=mRNA_3176-protein|Name=jgi.p|Nanoce1779_2|622982|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MYEQLLLGIIRPPRLGYEFPHALGPVTLSFSDGTVCHRTDFDVENGRNQK
LGCSLWQPAGAETQDGWPCVIFLHGNSSSRVEAVKTNVLKSVMASGSALV
GFDFTGCGNADGEYISLGWFEVHDTRQVIDELRRRGCGRIVLHGRSMGAV
TALQYTIQAFLDSPFSGFKKLAYDLTSKGMVHIPHFATAAVLSLLRRSVR
SRAGFDLFKLKPIKHVHHCTTVPALFLVAEDDELIPPWHAEGLRKQDVSN
AS*

mRNA from alignment at scaffold_7:854864..856175+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3176 ID=mRNA_3176|Name=jgi.p|Nanoce1779_2|622982|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp|location=Sequence derived from alignment at scaffold_7:854864..856175+ (Nannochloropsis oceanica)
ATGTACGAGCAGCTCTTGCTAGGAATCATCCGCCCTCCACGGCTGGGTTA
TGAATTCCCTCATGCCTTGGGACCTGTCACGCTCTCCTTCTCTGATGGCA
CAGTGTGTCACAGAACCGACTTTGATGTGGAGAATGGTCGAAATCAAAAA
TTGGGATGTAGTTTGTGGCAACCGGCAGGGGCGGAGACGCAGGACGGATG
GCCCTGCGTCATTTTTTTGCACGGAAATTCGAGCAGTCGCGTGGAGGCGG
TGAAAACAAATGTGTTGAAATCCGTGATGGCAAGCGGCTCAGCCCTCGTT
GGCTTTGACTTTACTGGGTGTGGCAACGCCGACGGAGAATATATCTCCTT
AGGTTGGTTCGAGGTACACGACACACGCCAGGTGATAGACGAGCTCCGAC
GAAGAGGCTGTGGCCGCATAGTCCTCCATGGGCGTTCCATGGGCGCTGTG
ACGGCTTTACAGTACACCATTCAAGCATGTACTGTTTCTTCCCCCCCTTC
CCATTCCTCCTCCTCTTCCTCCTGCTCTTTTTCTTCCGCCTCCTGCTATT
CTTCTTCCTCATCTATGGTGATTCCCGCGGGCTTAGTCCTCGACTCGCCA
TTTTCAGGGTTCAAAAAGCTTGCCTACGATCTCACCAGCAAGGGCATGGT
CCACATCCCTCATTTCGCCACCGCCGCCGTCCTGTCCCTCCTGCGTCGCT
CCGTCCGTTCTCGTGCCGGCTTTGATTTATTTAAGCTCAAGCCTATTAAG
CATGTACACCACTGCACAACTGTCCCAGCTCTTTTCCTAGTAGCAGAAGA
CGATGAGTTAATTCCTCCCTGGCACGCCGAGGGTCTGCGAAGTAAGTATG
GTGGTCCGTCGTTGGGGATTCGGTTTGCGGGCTCACATAACAGTCCGAGG
CCTGCTGTTGTGTACGCTCTGGCGAGTGTGTTTGTCAAGGCAGTAAATGA
AAGGGAATCGAGGTTTGGCTCGGTGGCTGTGGATTTAGCTTTACATCTCA
TAGAAACAACGGCGGTGGTGACCAGTCAAAAAGAGGAGGAGGAGGAGGAG
GAGGAGGATCGAGAGCACGGCGAGGAGATTATGGAGGATTTAAAAGATGA
CATGTACAAGGGTACTCATGTTTCTCCTCGCCGCCATTTGCAGCAGCATT
GCCAGCAACAGCAACAGCAGCAGAGGCGACGACGATTGCGCCGACAGAGG
TATCGTGGGCCTTACAGTTACTACTACGAACACGCCTGCAGCAGCAGCCG
TGGGACACAAGCATTACGTGCCAACCACAACGACAGAGCAGGACGTCTCA
AACGCATCATAA

Coding sequence (CDS) from alignment at scaffold_7:854864..856175+

>mRNA_3176 ID=mRNA_3176|Name=jgi.p|Nanoce1779_2|622982|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at scaffold_7:854864..856175+ (Nannochloropsis oceanica)
ATGTACGAGCAGCTCTTGCTAGGAATCATCCGCCCTCCACGGCTGGGTTA
TGAATTCCCTCATGCCTTGGGACCTGTCACGCTCTCCTTCTCTGATGGCA
CAGTGTGTCACAGAACCGACTTTGATGTGGAGAATGGTCGAAATCAAAAA
TTGGGATGTAGTTTGTGGCAACCGGCAGGGGCGGAGACGCAGGACGGATG
GCCCTGCGTCATTTTTTTGCACGGAAATTCGAGCAGTCGCGTGGAGGCGG
TGAAAACAAATGTGTTGAAATCCGTGATGGCAAGCGGCTCAGCCCTCGTT
GGCTTTGACTTTACTGGGTGTGGCAACGCCGACGGAGAATATATCTCCTT
AGGTTGGTTCGAGGTACACGACACACGCCAGGTGATAGACGAGCTCCGAC
GAAGAGGCTGTGGCCGCATAGTCCTCCATGGGCGTTCCATGGGCGCTGTG
ACGGCTTTACAGTACACCATTCAAGCATTCCTCGACTCGCCATTTTCAGG
GTTCAAAAAGCTTGCCTACGATCTCACCAGCAAGGGCATGGTCCACATCC
CTCATTTCGCCACCGCCGCCGTCCTGTCCCTCCTGCGTCGCTCCGTCCGT
TCTCGTGCCGGCTTTGATTTATTTAAGCTCAAGCCTATTAAGCATGTACA
CCACTGCACAACTGTCCCAGCTCTTTTCCTAGTAGCAGAAGACGATGAGT
TAATTCCTCCCTGGCACGCCGAGGGTCTGCGAAAGCAGGACGTCTCAAAC
GCATCATAAATGTACGAGCAGCTCTTGCTAGGAATCATCCGCCCTCCACG
GCTGGGTTATGAATTCCCTCATGCCTTGGGACCTGTCACGCTCTCCTTCT
CTGATGGCACAGTGTGTCACAGAACCGACTTTGATGTGGAGAATGGTCGA
AATCAAAAATTGGGATGTAGTTTGTGGCAACCGGCAGGGGCGGAGACGCA
GGACGGATGGCCCTGCGTCATTTTTTTGCACGGAAATTCGAGCAGTCGCG
TGGAGGCGGTGAAAACAAATGTGTTGAAATCCGTGATGGCAAGCGGCTCA
GCCCTCGTTGGCTTTGACTTTACTGGGTGTGGCAACGCCGACGGAGAATA
TATCTCCTTAGGTTGGTTCGAGGTACACGACACACGCCAGGTGATAGACG
AGCTCCGACGAAGAGGCTGTGGCCGCATAGTCCTCCATGGGCGTTCCATG
GGCGCTGTGACGGCTTTACAGTACACCATTCAAGCATTCCTCGACTCGCC
ATTTTCAGGGTTCAAAAAGCTTGCCTACGATCTCACCAGCAAGGGCATGG
TCCACATCCCTCATTTCGCCACCGCCGCCGTCCTGTCCCTCCTGCGTCGC
TCCGTCCGTTCTCGTGCCGGCTTTGATTTATTTAAGCTCAAGCCTATTAA
GCATGTACACCACTGCACAACTGTCCCAGCTCTTTTCCTAGTAGCAGAAG
ACGATGAGTTAATTCCTCCCTGGCACGCCGAGGGTCTGCGAAAGCAGGAC
GTCTCAAACGCATCATAAATGTACGAGCAGCTCTTGCTAGGAATCATCCG
CCCTCCACGGCTGGGTTATGAATTCCCTCATGCCTTGGGACCTGTCACGC
TCTCCTTCTCTGATGGCACAGTGTGTCACAGAACCGACTTTGATGTGGAG
AATGGTCGAAATCAAAAATTGGGATGTAGTTTGTGGCAACCGGCAGGGGC
GGAGACGCAGGACGGATGGCCCTGCGTCATTTTTTTGCACGGAAATTCGA
GCAGTCGCGTGGAGGCGGTGAAAACAAATGTGTTGAAATCCGTGATGGCA
AGCGGCTCAGCCCTCGTTGGCTTTGACTTTACTGGGTGTGGCAACGCCGA
CGGAGAATATATCTCCTTAGGTTGGTTCGAGGTACACGACACACGCCAGG
TGATAGACGAGCTCCGACGAAGAGGCTGTGGCCGCATAGTCCTCCATGGG
CGTTCCATGGGCGCTGTGACGGCTTTACAGTACACCATTCAAGCATTCCT
CGACTCGCCATTTTCAGGGTTCAAAAAGCTTGCCTACGATCTCACCAGCA
AGGGCATGGTCCACATCCCTCATTTCGCCACCGCCGCCGTCCTGTCCCTC
CTGCGTCGCTCCGTCCGTTCTCGTGCCGGCTTTGATTTATTTAAGCTCAA
GCCTATTAAGCATGTACACCACTGCACAACTGTCCCAGCTCTTTTCCTAG
TAGCAGAAGACGATGAGTTAATTCCTCCCTGGCACGCCGAGGGTCTGCGA
AAGCAGGACGTCTCAAACGCATCATAA

Synonyms

Publications