jgi.p|Nanoce1779_2|399747, mRNA_3175 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|399747
Unique Name	mRNA_3175
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1151
Alignment location	scaffold_7:852425..854288 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	399833
Track	FilteredModels2
ProteinId	399747

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:852425..854288 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|399747	gene_3175	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|399747	mRNA_3175-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3175	CDS_3175	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:852425..854288-
coding sequence from alignment at scaffold_7:852425..854288-

mRNA sequence

>mRNA_3175 ID=mRNA_3175|Name=jgi.p|Nanoce1779_2|399747|organism=Nannochloropsis oceanica|type=mRNA|length=1151bp
CCAAGTTGGAAGAATCAACTTTCTTCATCGGCCGACCTCAACAAGCAACC
CAACCCCTTATCAGATACTTACCCTCCCTCTGACGCTCTCTCCCGCACTT
TCAAAGACAGTTAATATATAAGCAAGCCTGAAATAGAAAGGAGGCGCGCA
TTTGTGCTGTCGCCACGACCAAGCCAACTCAGCCAAAGAAGCCGGCGTGA
GCTCGTCCGACCTCACATTTACCCCACCTCCACCGCTCAACGATGTCCAA
CCGCTTCGCGCTCCTCGCTGACGATGATGACGATGGAGGCCCCCCTCAAA
AGCCTGTCGCGGTTGCCATCTCGGCCTCTAAGAAAATCGAGGACACTGTC
GCTCGTAGTGGTGCCAAGGGTGGGCAACGTGGTGGTCGTGTGCATGCGAA
CGGCAAGGTGGAGCCCCGTGAGCCTAAGGCACATGCGCGTGATGAGCACC
GCCAGCGTGATCGACAGGATGGGACGGGGCGGGGGGCGAAGAAACAGCAC
CGTAATGGCAGCGGGAAGTATAATTGGGGGGAGGATGGAGAGAATGATGG
GGTTGTCGAAGCCATTGATCCCGTGGGAGGCGACGAGGAGGAGGAGTTGG
CGCCTGTCGAAGGCGTGGAGGGGGAAGGAGAGGAGGTAGAGGGGAGGGGG
ATGAAGAAGACGAGGGAGGAGAGGGAGAAGGCCCCTGAGCCCGAGCCTGA
GCCTGAGATCCCTACGAAGAGCTACTTGGAGTACCAGGCGGAGCTTGTGG
AGCAAAAGAAGAGGAATGTCGAGCTGTTCGGGGAGGTGAAGGAGCGAGAG
GTTGATACTTCCGAATTTGACAAGCTGGTGTTGGTGGAAAAGGAGGCAGG
GGCGAAGAAGAAAGCGGCTTCGGCACAGAGAGCGACAAGTCGTCAAATTT
TGAATGCGAGTTTTCGATCTGGAGGGGTTGATACGGGCCGGGAGAGTTGG
GGTTAATTTCAGAAGTGTTTGCAGAAAACACGAGAGCTATAACGACAAAC
GATTACGACGGTCTGCAAGAGAAAAGGACAGAAGGGAAGGAGAAGTAAGT
CTACTTTTAAGGATTAGAGAAATTAAAAAGGCAGGCAAGTAAGGTGACCC
AACACAACAAAGGGTAACTACGGGGGAAAGGGCCAAAGTGCCACTGCATT
C

protein sequence of jgi.p|Nanoce1779_2|399747

>mRNA_3175-protein ID=mRNA_3175-protein|Name=jgi.p|Nanoce1779_2|399747|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MSNRFALLADDDDDGGPPQKPVAVAISASKKIEDTVARSGAKGGQRGGRV
HANGKVEPREPKAHARDEHRQRDRQDGTGRGAKKQHRNGSGKYNWGEDGE
NDGVVEAIDPVGGDEEEELAPVEGVEGEGEEVEGRGMKKTREEREKAPEP
EPEPEIPTKSYLEYQAELVEQKKRNVELFGEVKEREVDTSEFDKLVLVEK
EAGAKKKAASAQRATSRQILNASFRSGGVDTGRESWG*

mRNA from alignment at scaffold_7:852425..854288-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3175 ID=mRNA_3175|Name=jgi.p|Nanoce1779_2|399747|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at scaffold_7:852425..854288- (Nannochloropsis oceanica)
CCAAGTTGGAAGAATCAACTTTCTTCATCGGCCGACCTCAACAAGCAACC
CAACCCCTTATCAGATACTTACCCTCCCTCTGACGCTCTCTCCCGCACTT
TCAAAGACAGTTAATATATAAGCAAGCCTGAAATAGAAAGGAGGCGCGCA
TTTGTGCTGTCGCCACGACCAAGCCAACTCAGCCAAAGAAGCCGGCGTGA
GCTCGTCCGACCTCACATTTACCCCACCTCCACCGCTCAACGATGGTAAG
TACATTGGTTAAGGCAAAATACAGAGAAATCTGTCAGTGTATAAATTGTC
TGATAGCTGCATTGTGTCCTTCGGCAGACGGAGTCGGCAGACAATAGGTC
TGCAAAACGCTGATAGACATCTGCTCGATGTACGTAAGGGGCATCACCAT
AGCCATGACCGTTCAGAAAAAGTTCCATTTCTTGTCAGGAAGCCTATTGA
CTGAACATGCTAAGTTAATGCCCTCTTTTTACGCCGCCACGTAGCTTGGT
CCCTTGCAAGTCCCCTTTATCCTACGCCCTGACCCCTATCATTCCCCAAC
CCCACCAACCAACACAGTCCAACCGCTTCGCGCTCCTCGCTGACGATGAT
GACGATGGAGGCCCCCCTCAAAAGCCTGTCGCGGTTGCCATCTCGGCCTC
TAAGAAAATCGAGGACACTGTCGCTCGTAGTGGTGCCAAGGGTGGGCAAC
GTGGTGGTCGTGTGCATGCGAACGGCAAGGTGGAGCCCCGTGAGCCTAAG
GCACATGCGCGTGATGAGCACCGCCAGCGTGATCGACAGGATGGGACGGG
GCGGGGGGCGAAGAAACAGCACCGTAATGGCAGCGGGAAGTATAATTGGG
GGGAGGATGGAGAGAATGATGGGGTTGTCGAAGCCATTGATCCCGTGGGA
GGCGACGAGGAGGAGGAGTTGGCGCCTGTCGAAGGCGTGGAGGGGGAAGG
AGAGGAGGTAGAGGGGAGGGGGATGAAGAAGACGAGGGAGGAGAGGGAGA
AGGCCCCTGAGCCCGAGCCTGAGCCTGAGATCCCTACGAAGAGCTACTTG
GAGTACCAGGCGGAGCTTGTGGAGCAAAAGAAGAGGAATGTCGAGCTGTT
CGGGGAGGTGAAGGAGCGAGAGGTTGATACTTCCGAATTTGACAAGCTGG
TGTTGGTGGAAAAGGAGGCGGAGAAAAATTTGGGGGGGGAGGCAGGGGCG
AAGAAGAAAGCGGCTTCGGCACAGAGAGCGACAAGTCGTCAAATTTTGAA
TGCGAGTTTTCGATCTGGAGGGGTTGATACGGGCCGTGGAGAGAGGGGAG
GGAAGGGAGGAAGGGGGGAGGGGGGGAGGGGGGGAGGACGAGGAGGAGAT
AGGGGGGGTGGGCGGGGAATCAGGAGGGAGGGAGAGAGGGAGGGGTCAGG
TGGACGTGGTCGGGGGGAGGGGGGACGAGGGCGAGGAGGAAGGGAGGGTT
ACCGCGGTGGGCGAGGTGGGCGTGGTGGTGGAGGGGGGAGGTTGAATATT
GATGATACTAACATGTTTCCGACGCTCTAAGGTGAGAGATAGAGAGTGAA
GGACGTGGGAATGGCGTGTCTGTGTATTTGTCTGTGTCTGTATCCATGCT
GTGTATATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
AGGGGAGAGTTGGGGTTAATTTCAGAAGTGTTTGCAGAAAACACGAGAGC
TATAACGACAAACGATTACGACGGTCTGCAAGAGAAAAGGACAGAAGGGA
AGGAGAAGTAAGTCTACTTTTAAGGATTAGAGAAATTAAAAAGGCAGGCA
AGTAAGGTGACCCAACACAACAAAGGGTAACTACGGGGGAAAGGGCCAAA
GTGCCACTGCATTC

Coding sequence (CDS) from alignment at scaffold_7:852425..854288-

>mRNA_3175 ID=mRNA_3175|Name=jgi.p|Nanoce1779_2|399747|organism=Nannochloropsis oceanica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_7:852425..854288- (Nannochloropsis oceanica)
GGGAGAGTTGGGGTTAAGCAGGGGCGAAGAAGAAAGCGGCTTCGGCACAG
AGAGCGACAAGTCGTCAAATTTTGAATGCGAGTTTTCGATCTGGAGGGGT
TGATACGGGCCTCCAACCGCTTCGCGCTCCTCGCTGACGATGATGACGAT
GGAGGCCCCCCTCAAAAGCCTGTCGCGGTTGCCATCTCGGCCTCTAAGAA
AATCGAGGACACTGTCGCTCGTAGTGGTGCCAAGGGTGGGCAACGTGGTG
GTCGTGTGCATGCGAACGGCAAGGTGGAGCCCCGTGAGCCTAAGGCACAT
GCGCGTGATGAGCACCGCCAGCGTGATCGACAGGATGGGACGGGGCGGGG
GGCGAAGAAACAGCACCGTAATGGCAGCGGGAAGTATAATTGGGGGGAGG
ATGGAGAGAATGATGGGGTTGTCGAAGCCATTGATCCCGTGGGAGGCGAC
GAGGAGGAGGAGTTGGCGCCTGTCGAAGGCGTGGAGGGGGAAGGAGAGGA
GGTAGAGGGGAGGGGGATGAAGAAGACGAGGGAGGAGAGGGAGAAGGCCC
CTGAGCCCGAGCCTGAGCCTGAGATCCCTACGAAGAGCTACTTGGAGTAC
CAGGCGGAGCTTGTGGAGCAAAAGAAGAGGAATGTCGAGCTGTTCGGGGA
GGTGAAGGAGCGAGAGGTTGATACTTCCGAATTTGACAAGCTGGTGTTGG
TGGAAAAGGAGATGGGGAGAGTTGGGGTTAAGCAGGGGCGAAGAAGAAAG
CGGCTTCGGCACAGAGAGCGACAAGTCGTCAAATTTTGAATGCGAGTTTT
CGATCTGGAGGGGTTGATACGGGCCTCCAACCGCTTCGCGCTCCTCGCTG
ACGATGATGACGATGGAGGCCCCCCTCAAAAGCCTGTCGCGGTTGCCATC
TCGGCCTCTAAGAAAATCGAGGACACTGTCGCTCGTAGTGGTGCCAAGGG
TGGGCAACGTGGTGGTCGTGTGCATGCGAACGGCAAGGTGGAGCCCCGTG
AGCCTAAGGCACATGCGCGTGATGAGCACCGCCAGCGTGATCGACAGGAT
GGGACGGGGCGGGGGGCGAAGAAACAGCACCGTAATGGCAGCGGGAAGTA
TAATTGGGGGGAGGATGGAGAGAATGATGGGGTTGTCGAAGCCATTGATC
CCGTGGGAGGCGACGAGGAGGAGGAGTTGGCGCCTGTCGAAGGCGTGGAG
GGGGAAGGAGAGGAGGTAGAGGGGAGGGGGATGAAGAAGACGAGGGAGGA
GAGGGAGAAGGCCCCTGAGCCCGAGCCTGAGCCTGAGATCCCTACGAAGA
GCTACTTGGAGTACCAGGCGGAGCTTGTGGAGCAAAAGAAGAGGAATGTC
GAGCTGTTCGGGGAGGTGAAGGAGCGAGAGGTTGATACTTCCGAATTTGA
CAAGCTGGTGTTGGTGGAAAAGGAGATGGGGAGAGTTGGGGTTAAGCAGG
GGCGAAGAAGAAAGCGGCTTCGGCACAGAGAGCGACAAGTCGTCAAATTT
TGAATGCGAGTTTTCGATCTGGAGGGGTTGATACGGGCCTCCAACCGCTT
CGCGCTCCTCGCTGACGATGATGACGATGGAGGCCCCCCTCAAAAGCCTG
TCGCGGTTGCCATCTCGGCCTCTAAGAAAATCGAGGACACTGTCGCTCGT
AGTGGTGCCAAGGGTGGGCAACGTGGTGGTCGTGTGCATGCGAACGGCAA
GGTGGAGCCCCGTGAGCCTAAGGCACATGCGCGTGATGAGCACCGCCAGC
GTGATCGACAGGATGGGACGGGGCGGGGGGCGAAGAAACAGCACCGTAAT
GGCAGCGGGAAGTATAATTGGGGGGAGGATGGAGAGAATGATGGGGTTGT
CGAAGCCATTGATCCCGTGGGAGGCGACGAGGAGGAGGAGTTGGCGCCTG
TCGAAGGCGTGGAGGGGGAAGGAGAGGAGGTAGAGGGGAGGGGGATGAAG
AAGACGAGGGAGGAGAGGGAGAAGGCCCCTGAGCCCGAGCCTGAGCCTGA
GATCCCTACGAAGAGCTACTTGGAGTACCAGGCGGAGCTTGTGGAGCAAA
AGAAGAGGAATGTCGAGCTGTTCGGGGAGGTGAAGGAGCGAGAGGTTGAT
ACTTCCGAATTTGACAAGCTGGTGTTGGTGGAAAAGGAGATGGGGAGAGT
TGGGGTTAAGCAGGGGCGAAGAAGAAAGCGGCTTCGGCACAGAGAGCGAC
AAGTCGTCAAATTTTGAATGCGAGTTTTCGATCTGGAGGGGTTGATACGG
GCCTCCAACCGCTTCGCGCTCCTCGCTGACGATGATGACGATGGAGGCCC
CCCTCAAAAGCCTGTCGCGGTTGCCATCTCGGCCTCTAAGAAAATCGAGG
ACACTGTCGCTCGTAGTGGTGCCAAGGGTGGGCAACGTGGTGGTCGTGTG
CATGCGAACGGCAAGGTGGAGCCCCGTGAGCCTAAGGCACATGCGCGTGA
TGAGCACCGCCAGCGTGATCGACAGGATGGGACGGGGCGGGGGGCGAAGA
AACAGCACCGTAATGGCAGCGGGAAGTATAATTGGGGGGAGGATGGAGAG
AATGATGGGGTTGTCGAAGCCATTGATCCCGTGGGAGGCGACGAGGAGGA
GGAGTTGGCGCCTGTCGAAGGCGTGGAGGGGGAAGGAGAGGAGGTAGAGG
GGAGGGGGATGAAGAAGACGAGGGAGGAGAGGGAGAAGGCCCCTGAGCCC
GAGCCTGAGCCTGAGATCCCTACGAAGAGCTACTTGGAGTACCAGGCGGA
GCTTGTGGAGCAAAAGAAGAGGAATGTCGAGCTGTTCGGGGAGGTGAAGG
AGCGAGAGGTTGATACTTCCGAATTTGACAAGCTGGTGTTGGTGGAAAAG
GAGATG

Synonyms

Publications