jgi.p|Nanoce1779_2|584827, mRNA_3174 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584827
Unique NamemRNA_3174
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1362
Alignment locationscaffold_7:850004..851709 -

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Properties
Property NameValue
TranscriptId584913
TrackFilteredModels2
ProteinId584827
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:850004..851709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584827gene_3174Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584827mRNA_3174-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3174CDS_3174Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3174 ID=mRNA_3174|Name=jgi.p|Nanoce1779_2|584827|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ACAGGTACTATCATATTTTCCACAATTTTCTGTCGCCTTTCTCACACTGG
GACGCCCCGTGAGCTTTGCCGCCCTTCTCCTCCTCGTCGGTCGTCCGTTG
AGGCATACGTCAGAACTTCCAGCACATACTGCATTCGTCCCCACGCCTGC
GCCTTCCTCCATGTCATCCCCGGCCAAATTGCTAAAGAAGAGCATTTCTG
CCGCCAAAGACATAGCCGATGCGGCCGCCTCGGGAGACAAAGCGTCTGCC
ACTGCCTCCGCCGCGGCCCCAAAGAAATCATCTGCGTTGGAGCAGGAACG
AAAGAAGTCCTCCCGCAAGCGCGCCCCAGTTGATTATAACGAGGAGCGTG
TCGTTGTCACGGGAGAAGAGGCCGTCGCCGAGCAAAGCAAGAATAAAAAG
CCTAAGGGCGGCGCCCCCAAAATTTTTTCTGGTATGCAGCCTCTGCCCAC
GCGAGACGCCGCTGGCAAGTTGCACTTTGCTGATCACCCAGACTTTACCC
CGAACATGACGCCCAAGGAGGTGTTGCGCGCAGGAAGCTTTGGTGGGGGA
TATTTTCGTCCTATTCACTGCACGGTAAATGAACAGGATTTCAAGGATGC
GCACAAAGAATTTCCCAAGGATTGGTTCGAGGGTTTGGACGTCGGGCGGA
TGATTACCTCCAAGACGTATCGCGCGGACATCAATACGTTCGGGGTAAAG
TGTGGGGGAAGCTTGGAGATGTGGCAGTCGAGTGGATGGATTACGGCAAT
TGATCCCTATGGCGCGTTTCAATGGTATTGCCGTTTCTATCTAGGCCGGC
GGTCGGAAGACGACGCCCGTCAGATCTCGCGTTTCAACCAGGTGATGGGT
CCCACGGGTCGCTTTCGCACTAATTTGATGAACCAAATCATCCGCAAAAA
TACGCGATGGGACGATGTGAATGTGTCACCGGTCATTCGACAGACGTTAC
AGCATTGGGGGTATCGATTGACAGAGGCAGACTTCAAGGCTCACTGCAAG
AAGAAGGGCTACAAGGTTCCGGGGTAAACCGTTAACAGGAGGAGCGGAAA
TGAAGCGTTGACAAGTTAGCGTCAGCGGGACTGAGGCGTTGAATCGGGCC
GAAGCGACCGGGGAGTTGGAGAGAGGCGAAAGAAGAGAGTTACCGAGACA
AGTCCATTTATCCGAACCTCACGAAAGCTTGGCTGCAATCATTCAAGCGG
ACAGAGACAAGGGAGAAAGAGAGAGAGAGAACGAATGGAAGTAGAAAGAA
GCACAAGCACACAGTCATTTCTTTCCCCCAAACACATGACGAAAAAAGGG
GTCCGGCATAAAGAAGATATCACACCAGCCGGAAGGCCTACCGTACGCAT
TTAGGAACAAGT
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protein sequence of jgi.p|Nanoce1779_2|584827

>mRNA_3174-protein ID=mRNA_3174-protein|Name=jgi.p|Nanoce1779_2|584827|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MSSPAKLLKKSISAAKDIADAAASGDKASATASAAAPKKSSALEQERKKS
SRKRAPVDYNEERVVVTGEEAVAEQSKNKKPKGGAPKIFSGMQPLPTRDA
AGKLHFADHPDFTPNMTPKEVLRAGSFGGGYFRPIHCTVNEQDFKDAHKE
FPKDWFEGLDVGRMITSKTYRADINTFGVKCGGSLEMWQSSGWITAIDPY
GAFQWYCRFYLGRRSEDDARQISRFNQVMGPTGRFRTNLMNQIIRKNTRW
DDVNVSPVIRQTLQHWGYRLTEADFKAHCKKKGYKVPG*
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mRNA from alignment at scaffold_7:850004..851709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3174 ID=mRNA_3174|Name=jgi.p|Nanoce1779_2|584827|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at scaffold_7:850004..851709- (Nannochloropsis oceanica)
ACAGGTACTATCATATTTTCCACAATTTTCTGTCGCCTTTCTCACACTGG
GACGCCCCGTGAGCTTTGCCGCCCTTCTCCTCCTCGTCGGTCGTCCGTTG
AGGCATACGTCAGAACTTCCAGCACATACTGCATTCGTCCCCACGCCTGC
GCCTTCCTCCATGTCATCCCCGGCCAAATTGCTAAAGAAGAGCATTTCTG
CCGCCAAAGACATAGCCGATGCGGCCGCCTCGGGAGACAAAGCGTCTGCC
ACTGCCTCCGCCGCGGCCCCAAAGAAATCATCTGCGTTGGAGCAGGAACG
AAAGAAGTCCTCCCGCAAGCGCGCCCCAGTTGATTATAACGAGGAGCGTG
TCGTTGTCACGGGAGAAGAGGCCGTCGCCGAGCAAAGCAAGAATAAAAAG
CCTAAGGGCGGCGCCCCCAAAATTTTTTCTGGTATGCAGCCTCTGCCCAC
GCGAGACGCCGCTGGCAAGTTGCACTTTGCTGATCACCCAGACTTTACCC
CGAACATGACGCCCAAGGAGGTGTTGCGCGCAGGAAGCTTTGGTGGGGGA
TATTTTCGTCCTATTCACTGCACGGTAAATGAACAGGATTTCAAGGATGC
GCACAAAGAATTTCCCAAGGATTGGTTCGAGGGTTTGGACGTCGGGCGGA
TGATTACCTCCAAGACGTATCGCGCGGACATCAATACGTTCGGGGTAAAG
TGTGGGGGAAGCTTGGAGATGTGGCAGTCGAGTGGATGGATTACGGCAAT
TGATCCCTATGGCGCGTTTCAATGGTGAGTGAGGGTGGGTAGGTGTTAAG
GAGGGAGAGAGGGAGAGATGGAGGGAAGGGTGAAATATGCCCTTGCGTGG
TTGTGAGAATTCATGTCCTGCTGAATGACTCACTCCCTTTCTTCTCTTCC
TGGCCACCAAAAAGGTATTGCCGTTTCTATCTAGGCCGGCGGTCGGAAGA
CGACGCCCGTCAGATCTCGCGTTTCAACCAGGTGATGGGTCCCACGGGTC
GCTTTCGCACTAATTTGATGAACCAAATCATCCGCAAAAATACGCGATGG
GACGATGTGAATGTGTCACCGGTCATTCGACAGACGTTACAGCATTGGGG
GTATCGATTGACAGAGGTAGGACACGCATCAACACAGCTCCCTCTTCCCT
TCTTTCCAGTCGCCGTACAAAGGGCAGCTTACTACACACCTCCGCAACCC
TTGAAGATTACCATGTCAAATCCGCATTGCTGTATAAACTCACTTATCTC
TGCATGCTCTGGTGTGTGTATGCGTCTCTTTTCTCCTCCTCCTGTCCTCT
ACTCTTCCTCGTTGCCACAGGCAGACTTCAAGGCTCACTGCAAGAAGAAG
GGCTACAAGGTTCCGGGGTAAACCGTTAACAGGAGGAGCGGAAATGAAGC
GTTGACAAGTTAGCGTCAGCGGGACTGAGGCGTTGAATCGGGCCGAAGCG
ACCGGGGAGTTGGAGAGAGGCGAAAGAAGAGAGTTACCGAGACAAGTCCA
TTTATCCGAACCTCACGAAAGCTTGGCTGCAATCATTCAAGCGGACAGAG
ACAAGGGAGAAAGAGAGAGAGAGAACGAATGGAAGTAGAAAGAAGCACAA
GCACACAGTCATTTCTTTCCCCCAAACACATGACGAAAAAAGGGGTCCGG
CATAAAGAAGATATCACACCAGCCGGAAGGCCTACCGTACGCATTTAGGA
ACAAGT
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Coding sequence (CDS) from alignment at scaffold_7:850004..851709-

>mRNA_3174 ID=mRNA_3174|Name=jgi.p|Nanoce1779_2|584827|organism=Nannochloropsis oceanica|type=CDS|length=2601bp|location=Sequence derived from alignment at scaffold_7:850004..851709- (Nannochloropsis oceanica)
GCAGACTTCAAGGCTCACTGCAAGAAGAAGGGCTACAAGGTTCCGGGGTA
AGTATTGCCGTTTCTATCTAGGCCGGCGGTCGGAAGACGACGCCCGTCAG
ATCTCGCGTTTCAACCAGGTGATGGGTCCCACGGGTCGCTTTCGCACTAA
TTTGATGAACCAAATCATCCGCAAAAATACGCGATGGGACGATGTGAATG
TGTCACCGGTCATTCGACAGACGTTACAGCATTGGGGGTATCGATTGACA
GAGATGTCATCCCCGGCCAAATTGCTAAAGAAGAGCATTTCTGCCGCCAA
AGACATAGCCGATGCGGCCGCCTCGGGAGACAAAGCGTCTGCCACTGCCT
CCGCCGCGGCCCCAAAGAAATCATCTGCGTTGGAGCAGGAACGAAAGAAG
TCCTCCCGCAAGCGCGCCCCAGTTGATTATAACGAGGAGCGTGTCGTTGT
CACGGGAGAAGAGGCCGTCGCCGAGCAAAGCAAGAATAAAAAGCCTAAGG
GCGGCGCCCCCAAAATTTTTTCTGGTATGCAGCCTCTGCCCACGCGAGAC
GCCGCTGGCAAGTTGCACTTTGCTGATCACCCAGACTTTACCCCGAACAT
GACGCCCAAGGAGGTGTTGCGCGCAGGAAGCTTTGGTGGGGGATATTTTC
GTCCTATTCACTGCACGGTAAATGAACAGGATTTCAAGGATGCGCACAAA
GAATTTCCCAAGGATTGGTTCGAGGGTTTGGACGTCGGGCGGATGATTAC
CTCCAAGACGTATCGCGCGGACATCAATACGTTCGGGGTAAAGTGTGGGG
GAAGCTTGGAGATGTGGCAGTCGAGTGGATGGATTACGGCAATTGATCCC
TATGGCGCGTTTCAATGGCAGACTTCAAGGCTCACTGCAAGAAGAAGGGC
TACAAGGTTCCGGGGTAAGTATTGCCGTTTCTATCTAGGCCGGCGGTCGG
AAGACGACGCCCGTCAGATCTCGCGTTTCAACCAGGTGATGGGTCCCACG
GGTCGCTTTCGCACTAATTTGATGAACCAAATCATCCGCAAAAATACGCG
ATGGGACGATGTGAATGTGTCACCGGTCATTCGACAGACGTTACAGCATT
GGGGGTATCGATTGACAGAGATGTCATCCCCGGCCAAATTGCTAAAGAAG
AGCATTTCTGCCGCCAAAGACATAGCCGATGCGGCCGCCTCGGGAGACAA
AGCGTCTGCCACTGCCTCCGCCGCGGCCCCAAAGAAATCATCTGCGTTGG
AGCAGGAACGAAAGAAGTCCTCCCGCAAGCGCGCCCCAGTTGATTATAAC
GAGGAGCGTGTCGTTGTCACGGGAGAAGAGGCCGTCGCCGAGCAAAGCAA
GAATAAAAAGCCTAAGGGCGGCGCCCCCAAAATTTTTTCTGGTATGCAGC
CTCTGCCCACGCGAGACGCCGCTGGCAAGTTGCACTTTGCTGATCACCCA
GACTTTACCCCGAACATGACGCCCAAGGAGGTGTTGCGCGCAGGAAGCTT
TGGTGGGGGATATTTTCGTCCTATTCACTGCACGGTAAATGAACAGGATT
TCAAGGATGCGCACAAAGAATTTCCCAAGGATTGGTTCGAGGGTTTGGAC
GTCGGGCGGATGATTACCTCCAAGACGTATCGCGCGGACATCAATACGTT
CGGGGTAAAGTGTGGGGGAAGCTTGGAGATGTGGCAGTCGAGTGGATGGA
TTACGGCAATTGATCCCTATGGCGCGTTTCAATGGCAGACTTCAAGGCTC
ACTGCAAGAAGAAGGGCTACAAGGTTCCGGGGTAAGTATTGCCGTTTCTA
TCTAGGCCGGCGGTCGGAAGACGACGCCCGTCAGATCTCGCGTTTCAACC
AGGTGATGGGTCCCACGGGTCGCTTTCGCACTAATTTGATGAACCAAATC
ATCCGCAAAAATACGCGATGGGACGATGTGAATGTGTCACCGGTCATTCG
ACAGACGTTACAGCATTGGGGGTATCGATTGACAGAGATGTCATCCCCGG
CCAAATTGCTAAAGAAGAGCATTTCTGCCGCCAAAGACATAGCCGATGCG
GCCGCCTCGGGAGACAAAGCGTCTGCCACTGCCTCCGCCGCGGCCCCAAA
GAAATCATCTGCGTTGGAGCAGGAACGAAAGAAGTCCTCCCGCAAGCGCG
CCCCAGTTGATTATAACGAGGAGCGTGTCGTTGTCACGGGAGAAGAGGCC
GTCGCCGAGCAAAGCAAGAATAAAAAGCCTAAGGGCGGCGCCCCCAAAAT
TTTTTCTGGTATGCAGCCTCTGCCCACGCGAGACGCCGCTGGCAAGTTGC
ACTTTGCTGATCACCCAGACTTTACCCCGAACATGACGCCCAAGGAGGTG
TTGCGCGCAGGAAGCTTTGGTGGGGGATATTTTCGTCCTATTCACTGCAC
GGTAAATGAACAGGATTTCAAGGATGCGCACAAAGAATTTCCCAAGGATT
GGTTCGAGGGTTTGGACGTCGGGCGGATGATTACCTCCAAGACGTATCGC
GCGGACATCAATACGTTCGGGGTAAAGTGTGGGGGAAGCTTGGAGATGTG
GCAGTCGAGTGGATGGATTACGGCAATTGATCCCTATGGCGCGTTTCAAT
G
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Synonyms
Publications