jgi.p|Nanoce1779_2|584819, mRNA_3172 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584819
Unique NamemRNA_3172
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length675
Alignment locationscaffold_7:847293..848316 -

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Properties
Property NameValue
TranscriptId584905
TrackFilteredModels2
ProteinId584819
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:847293..848316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584819gene_3172Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584819mRNA_3172-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3172CDS_3172Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3172 ID=mRNA_3172|Name=jgi.p|Nanoce1779_2|584819|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
CAGGTAGCATCAACGCAGCATTTAAAACAACTTATAAGTAAGTATGCTGA
CTACTTCGGGCCGCGGTGGCGGAAGCATAACCATGACTAAACCAAAAGGG
CGTTTCCAGCTTACAAATGAGCAAAAGGAAGAATTCACGACCAGCTTCCA
ATTGTTTGACTCCGAGGGGAAGAACGCAATCGACTTGCACGAACTCAAGG
TCCTTATGCGTGCCCTGGGTTTCAACATCTCCAAGCAACAAATTTTGGCC
CTCGTCCGCGAGATCGACCCAACAAACCATGGCATCGTCTCTTTCGACAC
ATATCTGGAGATAATGACCGATGTTGCCTCTCGCCGTGATCCCCAAGAAG
AAATGAAGAAAGCTTTCTTGCTCTTTGCCGGCGAGAAAGGGTTGATCAAT
GTGCAGGATTTGAAGAGGGTCTGTAAACAGCTGGGGGAGAAAATGTCGGA
AGAGGAGTTGGGGGCAATGGTGGCGGAGTTTGATAGAGACGGGGATGGCT
CCATCAACGAGGAAGAATTTCTTCAAATCATGAAAGGAAGCGGTTCTTTT
TGACAGCAACGCAAAAAACTCCAAAGCAGGTGAACTATAAGAATATGTGA
AAAGAAGGAGGCGACACCGGAAAGCAGAAGAGGAGAGGGAAAACAACCAA
AAAGAGACCTATAGCATGATACGCC
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protein sequence of jgi.p|Nanoce1779_2|584819

>mRNA_3172-protein ID=mRNA_3172-protein|Name=jgi.p|Nanoce1779_2|584819|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MLTTSGRGGGSITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHE
LKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDP
QEEMKKAFLLFAGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDG
DGSINEEEFLQIMKGSGSF*
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mRNA from alignment at scaffold_7:847293..848316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3172 ID=mRNA_3172|Name=jgi.p|Nanoce1779_2|584819|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp|location=Sequence derived from alignment at scaffold_7:847293..848316- (Nannochloropsis oceanica)
CAGGTAGCATCAACGCAGCATTTAAAACAACTTATAAGTAAGTATGCTGA
CTACTTCGGGCCGCGGTGGCGGAAGCATAACCATGACTAAACCAAAAGGG
CGTTTCCAGCTTACAAATGAGCAAAAGGAAGAATTCACGACCAGCTTCCA
ATTGTTTGACTCCGAGGGGAAGAACGCAATCGACTTGCACGAACTCAAGG
TATTCAGTAGACTGCATTGTCTCACTTTAGTGCATTACAGGCGCTCTTTT
CTTCTCCGCGTCCTCTGATCCCACTCTCCTTCCCCCCTCCGACGAATCAG
GTCCTTATGCGTGCCCTGGGTTTCAACATCTCCAAGCAACAAATTTTGGC
CCTCGTCCGCGAGATCGACCCAACAAACCATGGCATCGTCTCTTTCGACA
CATATCTGGAGATAATGACCGATGTTGCCTCTCGCCGTGATCCCCAAGAA
GAAATGAAGAAAGCTTTCTTGCTCTTTGCCGGCGAGAAAGGGTTGATCAA
TGTGCAGGATTTGAAGAGGGTCTGTAAACAGCTGGGGGAGAAAATGTCGG
AAGAGGAGTTGGGGGCAATGGTGGCGGAGTTTGATAGGTGAGTGGGTGGA
ATGGTTTGGGAGGGTGGGGTGGGATGAAAAAGAGTGGAAGAGGTCGGATC
CGTCAAAAGCGGAAGCTTGCAGAGACCAAAAAGATTTGGCGAGCTCTGCG
CTTTGATAAACGTTTTCACTTCTCACTACAATGATGCATTACTACAGTCG
TGCGTACTATCTATCTACGCAACCGTTTCTTTTTTTCTCTTTCATCTCAT
CTCTCCACTCACGCACACTCCTTTCTCCCCAACAGAGACGGGGATGGCTC
CATCAACGAGGAAGAATTTCTTCAAATCATGAAAGGAAGCGGTTCTTTTT
GACAGCAACGCAAAAAACTCCAAAGCAGGTGAACTATAAGAATATGTGAA
AAGAAGGAGGCGACACCGGAAAGCAGAAGAGGAGAGGGAAAACAACCAAA
AAGAGACCTATAGCATGATACGCC
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Coding sequence (CDS) from alignment at scaffold_7:847293..848316-

>mRNA_3172 ID=mRNA_3172|Name=jgi.p|Nanoce1779_2|584819|organism=Nannochloropsis oceanica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_7:847293..848316- (Nannochloropsis oceanica)
AGACGGGGATGGCTCCATCAACGAGGAAGAATTTCTTCAAATCATGAAAG
GAAGCGGTTCTTTTTGAGTCCTTATGCGTGCCCTGGGTTTCAACATCTCC
AAGCAACAAATTTTGGCCCTCGTCCGCGAGATCGACCCAACAAACCATGG
CATCGTCTCTTTCGACACATATCTGGAGATAATGACCGATGTTGCCTCTC
GCCGTGATCCCCAAGAAGAAATGAAGAAAGCTTTCTTGCTCTTTGCCGGC
GAGAAAGGGTTGATCAATGTGCAGGATTTGAAGAGGGTCTGTAAACAGCT
GGGGGAGAAAATGTCGGAAGAGGAGTTGGGGGCAATGGTGGCGGAGTTTG
ATAGATGCTGACTACTTCGGGCCGCGGTGGCGGAAGCATAACCATGACTA
AACCAAAAGGGCGTTTCCAGCTTACAAATGAGCAAAAGGAAGAATTCACG
ACCAGCTTCCAATTGTTTGACTCCGAGGGGAAGAACGCAATCGACTTGCA
CGAACTCAAGAGACGGGGATGGCTCCATCAACGAGGAAGAATTTCTTCAA
ATCATGAAAGGAAGCGGTTCTTTTTGAGTCCTTATGCGTGCCCTGGGTTT
CAACATCTCCAAGCAACAAATTTTGGCCCTCGTCCGCGAGATCGACCCAA
CAAACCATGGCATCGTCTCTTTCGACACATATCTGGAGATAATGACCGAT
GTTGCCTCTCGCCGTGATCCCCAAGAAGAAATGAAGAAAGCTTTCTTGCT
CTTTGCCGGCGAGAAAGGGTTGATCAATGTGCAGGATTTGAAGAGGGTCT
GTAAACAGCTGGGGGAGAAAATGTCGGAAGAGGAGTTGGGGGCAATGGTG
GCGGAGTTTGATAGATGCTGACTACTTCGGGCCGCGGTGGCGGAAGCATA
ACCATGACTAAACCAAAAGGGCGTTTCCAGCTTACAAATGAGCAAAAGGA
AGAATTCACGACCAGCTTCCAATTGTTTGACTCCGAGGGGAAGAACGCAA
TCGACTTGCACGAACTCAAGAGACGGGGATGGCTCCATCAACGAGGAAGA
ATTTCTTCAAATCATGAAAGGAAGCGGTTCTTTTTGAGTCCTTATGCGTG
CCCTGGGTTTCAACATCTCCAAGCAACAAATTTTGGCCCTCGTCCGCGAG
ATCGACCCAACAAACCATGGCATCGTCTCTTTCGACACATATCTGGAGAT
AATGACCGATGTTGCCTCTCGCCGTGATCCCCAAGAAGAAATGAAGAAAG
CTTTCTTGCTCTTTGCCGGCGAGAAAGGGTTGATCAATGTGCAGGATTTG
AAGAGGGTCTGTAAACAGCTGGGGGAGAAAATGTCGGAAGAGGAGTTGGG
GGCAATGGTGGCGGAGTTTGATAGATGCTGACTACTTCGGGCCGCGGTGG
CGGAAGCATAACCATGACTAAACCAAAAGGGCGTTTCCAGCTTACAAATG
AGCAAAAGGAAGAATTCACGACCAGCTTCCAATTGTTTGACTCCGAGGGG
AAGAACGCAATCGACTTGCACGAACTCAAG
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Synonyms
Publications