jgi.p|Nanoce1779_2|584811, mRNA_3170 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584811
Unique NamemRNA_3170
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length991
Alignment locationscaffold_7:844300..845290 +

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Properties
Property NameValue
TranscriptId584897
TrackFilteredModels2
ProteinId584811
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:844300..845290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584811gene_3170Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584811mRNA_3170-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3170CDS_3170Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3170 ID=mRNA_3170|Name=jgi.p|Nanoce1779_2|584811|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
GCTGCTGCTGCTGCTGCTGCTGTTGCTACTGATGCTACAAAAAATGATAC
AATTCATTGAAATCATCAGAAATTTCAATCTGTTATCAGCTTGATATTCT
TTTGGATGGAGCGTCCACCTTCTTACGCCCCCCACAGTCCTCTCCACCGC
AACGGTCCCTCCCCACGAGTGCTGTCAATATCCGAAATCCCTTTCACCGC
ACCCGATGCCGTGCTTAATGGCGGTCCGCGTCCTAAACTTCCACATAAGC
CTCCAACATCCCCACCACTGGAACCTGCCCGCAGAAAGGTCCATAAGCCC
ACGTACATAAAGATGAACATAGGCACAAACCCATCATCCCACTGTGCCAT
CACCAGACCCACCGCTGCGCCCCCCACAGCAAGGAGCAAAACGATGGATC
CGTGCCATCCACCTTGGAAAAGAACTGCGGTAAGAACCGCAGTCAACAGT
TTGCTCATGCGCGGCGAGGGTGTGAGCTCGAGAGTGGCCAGGAGGACAGG
GACGACAATGGTCTCCACCAGTCCTAGCACCAGCAAGGCCGTCACGCTGT
TAAAGCACAAGGACCACAGGAGCAGTCTAACCCCTTCACTGAGTAGGGGA
TTCCCTTCCAAACGGGGGCTGGACTCATTGGCAGTGGAAGAGTCGGCGGT
CCGGAAAAAGTATTGGGGCCGGCGGCGGGCGTTGTTGTTGTTCAGGCTGC
CGCTAGTGCTCAGGCTGGAGCTGACGGTTGTCGCGGTGGAACTAGTGTTC
CCTACAGTCAGGCTGTCTCCTTCGTCCATCTTATATTACGTGCGTGTATG
CTTGTGCTGCGCCGGCAGCGGGTAAGAAATACAGGCGAGGAATTGCTATG
GTGAGCGGAATGAGGCGTTGATGCTGGCGGCAGTTGCGAAGAAGGACTAC
CACGTTGACCTTCTGGCTTGTTTGTCGCGCCGGCGGCTGCGCGTGGAGAT
GAGAATGAGCTTGAGTAAGAGATGCATGTCATGTACGTTGA
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protein sequence of jgi.p|Nanoce1779_2|584811

>mRNA_3170-protein ID=mRNA_3170-protein|Name=jgi.p|Nanoce1779_2|584811|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MERPPSYAPHSPLHRNGPSPRVLSISEIPFTAPDAVLNGGPRPKLPHKPP
TSPPLEPARRKVHKPTYIKMNIGTNPSSHCAITRPTAAPPTARSKTMDPC
HPPWKRTAVRTAVNSLLMRGEGVSSRVARRTGTTMVSTSPSTSKAVTLLK
HKDHRSSLTPSLSRGFPSKRGLDSLAVEESAVRKKYWGRRRALLLFRLPL
VLRLELTVVAVELVFPTVRLSPSSILYYVRVCLCCAGSG*
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mRNA from alignment at scaffold_7:844300..845290+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3170 ID=mRNA_3170|Name=jgi.p|Nanoce1779_2|584811|organism=Nannochloropsis oceanica|type=mRNA|length=991bp|location=Sequence derived from alignment at scaffold_7:844300..845290+ (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGCTGCTGTTGCTACTGATGCTACAAAAAATGATAC
AATTCATTGAAATCATCAGAAATTTCAATCTGTTATCAGCTTGATATTCT
TTTGGATGGAGCGTCCACCTTCTTACGCCCCCCACAGTCCTCTCCACCGC
AACGGTCCCTCCCCACGAGTGCTGTCAATATCCGAAATCCCTTTCACCGC
ACCCGATGCCGTGCTTAATGGCGGTCCGCGTCCTAAACTTCCACATAAGC
CTCCAACATCCCCACCACTGGAACCTGCCCGCAGAAAGGTCCATAAGCCC
ACGTACATAAAGATGAACATAGGCACAAACCCATCATCCCACTGTGCCAT
CACCAGACCCACCGCTGCGCCCCCCACAGCAAGGAGCAAAACGATGGATC
CGTGCCATCCACCTTGGAAAAGAACTGCGGTAAGAACCGCAGTCAACAGT
TTGCTCATGCGCGGCGAGGGTGTGAGCTCGAGAGTGGCCAGGAGGACAGG
GACGACAATGGTCTCCACCAGTCCTAGCACCAGCAAGGCCGTCACGCTGT
TAAAGCACAAGGACCACAGGAGCAGTCTAACCCCTTCACTGAGTAGGGGA
TTCCCTTCCAAACGGGGGCTGGACTCATTGGCAGTGGAAGAGTCGGCGGT
CCGGAAAAAGTATTGGGGCCGGCGGCGGGCGTTGTTGTTGTTCAGGCTGC
CGCTAGTGCTCAGGCTGGAGCTGACGGTTGTCGCGGTGGAACTAGTGTTC
CCTACAGTCAGGCTGTCTCCTTCGTCCATCTTATATTACGTGCGTGTATG
CTTGTGCTGCGCCGGCAGCGGGTAAGAAATACAGGCGAGGAATTGCTATG
GTGAGCGGAATGAGGCGTTGATGCTGGCGGCAGTTGCGAAGAAGGACTAC
CACGTTGACCTTCTGGCTTGTTTGTCGCGCCGGCGGCTGCGCGTGGAGAT
GAGAATGAGCTTGAGTAAGAGATGCATGTCATGTACGTTGA
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Coding sequence (CDS) from alignment at scaffold_7:844300..845290+

>mRNA_3170 ID=mRNA_3170|Name=jgi.p|Nanoce1779_2|584811|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_7:844300..845290+ (Nannochloropsis oceanica)
ATGGAGCGTCCACCTTCTTACGCCCCCCACAGTCCTCTCCACCGCAACGG
TCCCTCCCCACGAGTGCTGTCAATATCCGAAATCCCTTTCACCGCACCCG
ATGCCGTGCTTAATGGCGGTCCGCGTCCTAAACTTCCACATAAGCCTCCA
ACATCCCCACCACTGGAACCTGCCCGCAGAAAGGTCCATAAGCCCACGTA
CATAAAGATGAACATAGGCACAAACCCATCATCCCACTGTGCCATCACCA
GACCCACCGCTGCGCCCCCCACAGCAAGGAGCAAAACGATGGATCCGTGC
CATCCACCTTGGAAAAGAACTGCGGTAAGAACCGCAGTCAACAGTTTGCT
CATGCGCGGCGAGGGTGTGAGCTCGAGAGTGGCCAGGAGGACAGGGACGA
CAATGGTCTCCACCAGTCCTAGCACCAGCAAGGCCGTCACGCTGTTAAAG
CACAAGGACCACAGGAGCAGTCTAACCCCTTCACTGAGTAGGGGATTCCC
TTCCAAACGGGGGCTGGACTCATTGGCAGTGGAAGAGTCGGCGGTCCGGA
AAAAGTATTGGGGCCGGCGGCGGGCGTTGTTGTTGTTCAGGCTGCCGCTA
GTGCTCAGGCTGGAGCTGACGGTTGTCGCGGTGGAACTAGTGTTCCCTAC
AGTCAGGCTGTCTCCTTCGTCCATCTTATATTACGTGCGTGTATGCTTGT
GCTGCGCCGGCAGCGGGTAA
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Synonyms
Publications