jgi.p|Nanoce1779_2|584807, mRNA_3169 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584807
Unique Name	mRNA_3169
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2182
Alignment location	scaffold_7:841571..843752 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584893
Track	FilteredModels2
ProteinId	584807

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:841571..843752 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584807	gene_3169	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584807	mRNA_3169-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3169	CDS_3169	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:841571..843752+
coding sequence from alignment at scaffold_7:841571..843752+

mRNA sequence

>mRNA_3169 ID=mRNA_3169|Name=jgi.p|Nanoce1779_2|584807|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp
GAAACAACCCATTCGAACTCCCTCCCCCCAAAACACGGTCTCATATACGA
CCTCACGCTCCTCGTCGTCTCGCGCAATAATCCTAAGCTCCGTCAGGCAT
CTCGAAACTCCCTCTTGCACGCGCGCTAGTTGTCCACTAAAGGCAATTGC
ATCGGTACGCACCCACTCAAGCTCTCCTATAGCACGCCCAAGAGCTGCAT
ACGTATCTCTGGCGTTTGGTAGGAGCTGGAATGAATGACAAGCCATGCCA
GCCGTTGCCACTCTTTGCAAGGAGCGACGATCATCCCACCAGCGCTGAAG
CCACACTACTCCACACCACCATAAACCATAAACCAACAGGCACCGCGGTC
CCATCATGACGTCGTGGTTGGGAAGAAGCCGCCGGGTTGTCTCCGTGTGC
TTGGCGTCCGGTAGCCGGTCCAGCAGCACCAGCACCAGCTCCACTCTCGG
CAAGAGCACTATCATCACCCGACGCTTCCCCGGCACGGCCGCCTGTGCGG
TGGCCCTGCGCGTGATCGAGAGTAGAAGATGCAGCAGCAGTTCTGTCCTT
GGCACGAGCACCCCCAGAAGGATTGGTAGCGAATTTTTCGCTCCCTCCTT
GCGCCGGATGTTTAGCTCCTTGCCGTCGCATCAGGTGGTGGGGATGCCCT
CGCTGTCGCCCACCATGGAGGCTGGCACCATCGCCTCGTGGGCCAAGAAG
GAAGGGGAAAGCTTCGGGCCGGGGGACGTGCTGTGCGAAGTTGAGACGGA
TAAGGCAGTCGTGTCATTTGATGCACAAGACGAAGGAGTTCTAGCCAAGA
TTCTGATACAGGCGGGTAGTGGCGAGGTCAAGGTCGGGCAACCCATTATG
GTCATTGTCGACGACGCAAAGGACGTGGCCGCCTTTGCCGACTACACTCC
CGACGCTACACCTGCCCCTGGCGCGCCTGCCAAGACCACGACACCTGCCG
CTCCGGCCGCTCCTGCGGCCACGGCTTCCTCCCCTCCTTTTCCTCCTCCT
CCTCCCACTTCCAGTTCCCCACCTGCCTCGGCTGCGGCGGGGATCTCCTT
GCTAGGGCATCCCGGCCGAGTATTTGCCAGCCCGCTTGCCAAGACGCTGG
CAGAGGAGATGGGCCATGATTTGAGGGCGATTCCGGGCACGGGGCCGAAT
GGTCGAGTGGTTGCCGCGGACGTACGGGAATATGTCCCCGCTGTCGCCAG
TCAGTCAACAGCTGTGGCTGCAGCTCCTGCTCCTTCTGCTACTCCCGCTG
CGGCTGCCGCTGCGTCAGTGATGAATGTGACGGCACCGATACCAGGGAAG
GACTTCACAGATTATCCGCTGTCGGAGGCCAGCAAAGCGGTGGCTGCAAA
GCTGGCGATGGCGAAGCAGACGGTTCCTCATTATTATTTAACTGTTGATT
TGCAGTTAGGGAAGCTGTTGGAGTTGCGGGAGACGTTGAATAAAGGGGAG
GAGGGTTCATTGTCTGTGAATGATTTTCTGCTTAAAGCAGCGGCATTGGC
GAGTAAGAAGGTCCCAGAGGCGAATGCGAGCTGGCATGGGGAGTTTGTGC
GGCAATACCACGCGGTCGACATCAATTTGATGGTCGGCGTGGGTGATGGC
TTGCTAGCGCCCGTTGTCCGCAACGTGGACACAAAGGGCCTGCGTGCATT
ATCCGGAGAGGTCGCGGGCTTGGTGGCAGGGGCGGAGAGAGGGGAGTTGA
GTAGCGAGGCGTTGCAGTCGGGGACATTTACTCTGGTGAACGTTGGGATG
TACGGTGTGAAATCAGTGGCGCCTATCGTGAATCTTCCCCAGTCCTGTGT
GTTGGGCGTGGGGGCGATTGAGAATCGAGTTGTCCCTGCGGTTGATCCCA
GAGAAGGGGAGGAGGTGTATACGGTCGTGCCTGGGGTGACCGTGACGTTG
AGCTGCGACCATAGAGTGATCGATGGTGCGGTTGGCGCGCAATGGTTGAC
TGCCTTCAAGTCCTTGGTGGAGGACCCATTGACTCTTTTGTTGTAGATTT
GAGGCGTAAGTGGGAGGGAGAAGAAGTGAGGGAGAAGGGAAAGGAGGGTT
GGAGTTTTGTGTAGAGGGGCGATAGTGGCAGCTGTCTTATCAGGCAATCC
AGAACGGGGATGAACGAGAACGAGGACGAGGGCGTACTAGTAAGGGTATC
AAAAAGAAAGAAAAGAAGACTTATCATATGAA

protein sequence of jgi.p|Nanoce1779_2|584807

>mRNA_3169-protein ID=mRNA_3169-protein|Name=jgi.p|Nanoce1779_2|584807|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MTSWLGRSRRVVSVCLASGSRSSSTSTSSTLGKSTIITRRFPGTAACAVA
LRVIESRRCSSSSVLGTSTPRRIGSEFFAPSLRRMFSSLPSHQVVGMPSL
SPTMEAGTIASWAKKEGESFGPGDVLCEVETDKAVVSFDAQDEGVLAKIL
IQAGSGEVKVGQPIMVIVDDAKDVAAFADYTPDATPAPGAPAKTTTPAAP
AAPAATASSPPFPPPPPTSSSPPASAAAGISLLGHPGRVFASPLAKTLAE
EMGHDLRAIPGTGPNGRVVAADVREYVPAVASQSTAVAAAPAPSATPAAA
AAASVMNVTAPIPGKDFTDYPLSEASKAVAAKLAMAKQTVPHYYLTVDLQ
LGKLLELRETLNKGEEGSLSVNDFLLKAAALASKKVPEANASWHGEFVRQ
YHAVDINLMVGVGDGLLAPVVRNVDTKGLRALSGEVAGLVAGAERGELSS
EALQSGTFTLVNVGMYGVKSVAPIVNLPQSCVLGVGAIENRVVPAVDPRE
GEEVYTVVPGVTVTLSCDHRVIDGAVGAQWLTAFKSLVEDPLTLLL*

mRNA from alignment at scaffold_7:841571..843752+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3169 ID=mRNA_3169|Name=jgi.p|Nanoce1779_2|584807|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp|location=Sequence derived from alignment at scaffold_7:841571..843752+ (Nannochloropsis oceanica)
GAAACAACCCATTCGAACTCCCTCCCCCCAAAACACGGTCTCATATACGA
CCTCACGCTCCTCGTCGTCTCGCGCAATAATCCTAAGCTCCGTCAGGCAT
CTCGAAACTCCCTCTTGCACGCGCGCTAGTTGTCCACTAAAGGCAATTGC
ATCGGTACGCACCCACTCAAGCTCTCCTATAGCACGCCCAAGAGCTGCAT
ACGTATCTCTGGCGTTTGGTAGGAGCTGGAATGAATGACAAGCCATGCCA
GCCGTTGCCACTCTTTGCAAGGAGCGACGATCATCCCACCAGCGCTGAAG
CCACACTACTCCACACCACCATAAACCATAAACCAACAGGCACCGCGGTC
CCATCATGACGTCGTGGTTGGGAAGAAGCCGCCGGGTTGTCTCCGTGTGC
TTGGCGTCCGGTAGCCGGTCCAGCAGCACCAGCACCAGCTCCACTCTCGG
CAAGAGCACTATCATCACCCGACGCTTCCCCGGCACGGCCGCCTGTGCGG
TGGCCCTGCGCGTGATCGAGAGTAGAAGATGCAGCAGCAGTTCTGTCCTT
GGCACGAGCACCCCCAGAAGGATTGGTAGCGAATTTTTCGCTCCCTCCTT
GCGCCGGATGTTTAGCTCCTTGCCGTCGCATCAGGTGGTGGGGATGCCCT
CGCTGTCGCCCACCATGGAGGCTGGCACCATCGCCTCGTGGGCCAAGAAG
GAAGGGGAAAGCTTCGGGCCGGGGGACGTGCTGTGCGAAGTTGAGACGGA
TAAGGCAGTCGTGTCATTTGATGCACAAGACGAAGGAGTTCTAGCCAAGA
TTCTGATACAGGCGGGTAGTGGCGAGGTCAAGGTCGGGCAACCCATTATG
GTCATTGTCGACGACGCAAAGGACGTGGCCGCCTTTGCCGACTACACTCC
CGACGCTACACCTGCCCCTGGCGCGCCTGCCAAGACCACGACACCTGCCG
CTCCGGCCGCTCCTGCGGCCACGGCTTCCTCCCCTCCTTTTCCTCCTCCT
CCTCCCACTTCCAGTTCCCCACCTGCCTCGGCTGCGGCGGGGATCTCCTT
GCTAGGGCATCCCGGCCGAGTATTTGCCAGCCCGCTTGCCAAGACGCTGG
CAGAGGAGATGGGCCATGATTTGAGGGCGATTCCGGGCACGGGGCCGAAT
GGTCGAGTGGTTGCCGCGGACGTACGGGAATATGTCCCCGCTGTCGCCAG
TCAGTCAACAGCTGTGGCTGCAGCTCCTGCTCCTTCTGCTACTCCCGCTG
CGGCTGCCGCTGCGTCAGTGATGAATGTGACGGCACCGATACCAGGGAAG
GACTTCACAGATTATCCGCTGTCGGAGGCCAGCAAAGCGGTGGCTGCAAA
GCTGGCGATGGCGAAGCAGACGGTTCCTCATTATTATTTAACTGTTGATT
TGCAGTTAGGGAAGCTGTTGGAGTTGCGGGAGACGTTGAATAAAGGGGAG
GAGGGTTCATTGTCTGTGAATGATTTTCTGCTTAAAGCAGCGGCATTGGC
GAGTAAGAAGGTCCCAGAGGCGAATGCGAGCTGGCATGGGGAGTTTGTGC
GGCAATACCACGCGGTCGACATCAATTTGATGGTCGGCGTGGGTGATGGC
TTGCTAGCGCCCGTTGTCCGCAACGTGGACACAAAGGGCCTGCGTGCATT
ATCCGGAGAGGTCGCGGGCTTGGTGGCAGGGGCGGAGAGAGGGGAGTTGA
GTAGCGAGGCGTTGCAGTCGGGGACATTTACTCTGGTGAACGTTGGGATG
TACGGTGTGAAATCAGTGGCGCCTATCGTGAATCTTCCCCAGTCCTGTGT
GTTGGGCGTGGGGGCGATTGAGAATCGAGTTGTCCCTGCGGTTGATCCCA
GAGAAGGGGAGGAGGTGTATACGGTCGTGCCTGGGGTGACCGTGACGTTG
AGCTGCGACCATAGAGTGATCGATGGTGCGGTTGGCGCGCAATGGTTGAC
TGCCTTCAAGTCCTTGGTGGAGGACCCATTGACTCTTTTGTTGTAGATTT
GAGGCGTAAGTGGGAGGGAGAAGAAGTGAGGGAGAAGGGAAAGGAGGGTT
GGAGTTTTGTGTAGAGGGGCGATAGTGGCAGCTGTCTTATCAGGCAATCC
AGAACGGGGATGAACGAGAACGAGGACGAGGGCGTACTAGTAAGGGTATC
AAAAAGAAAGAAAAGAAGACTTATCATATGAA

Coding sequence (CDS) from alignment at scaffold_7:841571..843752+

>mRNA_3169 ID=mRNA_3169|Name=jgi.p|Nanoce1779_2|584807|organism=Nannochloropsis oceanica|type=CDS|length=1641bp|location=Sequence derived from alignment at scaffold_7:841571..843752+ (Nannochloropsis oceanica)
ATGACGTCGTGGTTGGGAAGAAGCCGCCGGGTTGTCTCCGTGTGCTTGGC
GTCCGGTAGCCGGTCCAGCAGCACCAGCACCAGCTCCACTCTCGGCAAGA
GCACTATCATCACCCGACGCTTCCCCGGCACGGCCGCCTGTGCGGTGGCC
CTGCGCGTGATCGAGAGTAGAAGATGCAGCAGCAGTTCTGTCCTTGGCAC
GAGCACCCCCAGAAGGATTGGTAGCGAATTTTTCGCTCCCTCCTTGCGCC
GGATGTTTAGCTCCTTGCCGTCGCATCAGGTGGTGGGGATGCCCTCGCTG
TCGCCCACCATGGAGGCTGGCACCATCGCCTCGTGGGCCAAGAAGGAAGG
GGAAAGCTTCGGGCCGGGGGACGTGCTGTGCGAAGTTGAGACGGATAAGG
CAGTCGTGTCATTTGATGCACAAGACGAAGGAGTTCTAGCCAAGATTCTG
ATACAGGCGGGTAGTGGCGAGGTCAAGGTCGGGCAACCCATTATGGTCAT
TGTCGACGACGCAAAGGACGTGGCCGCCTTTGCCGACTACACTCCCGACG
CTACACCTGCCCCTGGCGCGCCTGCCAAGACCACGACACCTGCCGCTCCG
GCCGCTCCTGCGGCCACGGCTTCCTCCCCTCCTTTTCCTCCTCCTCCTCC
CACTTCCAGTTCCCCACCTGCCTCGGCTGCGGCGGGGATCTCCTTGCTAG
GGCATCCCGGCCGAGTATTTGCCAGCCCGCTTGCCAAGACGCTGGCAGAG
GAGATGGGCCATGATTTGAGGGCGATTCCGGGCACGGGGCCGAATGGTCG
AGTGGTTGCCGCGGACGTACGGGAATATGTCCCCGCTGTCGCCAGTCAGT
CAACAGCTGTGGCTGCAGCTCCTGCTCCTTCTGCTACTCCCGCTGCGGCT
GCCGCTGCGTCAGTGATGAATGTGACGGCACCGATACCAGGGAAGGACTT
CACAGATTATCCGCTGTCGGAGGCCAGCAAAGCGGTGGCTGCAAAGCTGG
CGATGGCGAAGCAGACGGTTCCTCATTATTATTTAACTGTTGATTTGCAG
TTAGGGAAGCTGTTGGAGTTGCGGGAGACGTTGAATAAAGGGGAGGAGGG
TTCATTGTCTGTGAATGATTTTCTGCTTAAAGCAGCGGCATTGGCGAGTA
AGAAGGTCCCAGAGGCGAATGCGAGCTGGCATGGGGAGTTTGTGCGGCAA
TACCACGCGGTCGACATCAATTTGATGGTCGGCGTGGGTGATGGCTTGCT
AGCGCCCGTTGTCCGCAACGTGGACACAAAGGGCCTGCGTGCATTATCCG
GAGAGGTCGCGGGCTTGGTGGCAGGGGCGGAGAGAGGGGAGTTGAGTAGC
GAGGCGTTGCAGTCGGGGACATTTACTCTGGTGAACGTTGGGATGTACGG
TGTGAAATCAGTGGCGCCTATCGTGAATCTTCCCCAGTCCTGTGTGTTGG
GCGTGGGGGCGATTGAGAATCGAGTTGTCCCTGCGGTTGATCCCAGAGAA
GGGGAGGAGGTGTATACGGTCGTGCCTGGGGTGACCGTGACGTTGAGCTG
CGACCATAGAGTGATCGATGGTGCGGTTGGCGCGCAATGGTTGACTGCCT
TCAAGTCCTTGGTGGAGGACCCATTGACTCTTTTGTTGTAG

Synonyms

Publications