jgi.p|Nanoce1779_2|584799, mRNA_3167 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584799
Unique NamemRNA_3167
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length671
Alignment locationscaffold_7:836400..837070 +

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Properties
Property NameValue
TranscriptId584885
TrackFilteredModels2
ProteinId584799
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:836400..837070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584799gene_3167Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584799mRNA_3167-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3167CDS_3167Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3167 ID=mRNA_3167|Name=jgi.p|Nanoce1779_2|584799|organism=Nannochloropsis oceanica|type=mRNA|length=671bp
AATAGGATCGGAGAGAGACAGCAATATGGTGAGGAGGCTATCTCCGACGC
GTTTGCCCTTCCTGTCCATGCATGTCCTGCTCCTGCTAATCTTAGCGGTG
TCGACCGCCTCCTTCGTCCCACCGTCTTCCTCCTTCTCATCCACCTCCTT
CTCCACCTCCTCGTGCGCGTGCGACCATCATAATCGGGGAAAATTCAAAA
AGATGAACCGCGCATCGTCCTCCTCCAACACTACGGCTGTCCTTGCCTCC
TCCTCTTCCTCCCCCTCGCACTCCTCGCCCTCCTCCTCCCGCGAAGCCAC
CAAGACTTGCCGTGCTTGTCTCCAGCAGTATAAATCCAGCGAGAACGGCC
CAACAGCATGTCATCACCACCCAGGCATCTACACGGGTCGGCTGGCCCGA
ATCGACGACGTGGATCCAACAGGAGCAAAGGACTGGTTTTGGTCGTGCTG
TGGCGAGGAGAGGGAACACCGAGGATGCACACAAGATTATCATCGGAGCT
TCGATGACCCGCCAGGGCCATGGCGCAGTGGTTTTCAATAATGAAGTGAA
GGGACATACATCGGAAGAAACAAAATGAAGATTGGTGTATGCATGAGTGT
TGCCAGGAGCCTGCCAAGTGCATGTGTATTTTTAATGAAGTGAATTATTT
GAAACGAAAAGTTTCGGGAAA
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protein sequence of jgi.p|Nanoce1779_2|584799

>mRNA_3167-protein ID=mRNA_3167-protein|Name=jgi.p|Nanoce1779_2|584799|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MVRRLSPTRLPFLSMHVLLLLILAVSTASFVPPSSSFSSTSFSTSSCACD
HHNRGKFKKMNRASSSSNTTAVLASSSSSPSHSSPSSSREATKTCRACLQ
QYKSSENGPTACHHHPGIYTGRLARIDDVDPTGAKDWFWSCCGEEREHRG
CTQDYHRSFDDPPGPWRSGFQ*
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mRNA from alignment at scaffold_7:836400..837070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3167 ID=mRNA_3167|Name=jgi.p|Nanoce1779_2|584799|organism=Nannochloropsis oceanica|type=mRNA|length=671bp|location=Sequence derived from alignment at scaffold_7:836400..837070+ (Nannochloropsis oceanica)
AATAGGATCGGAGAGAGACAGCAATATGGTGAGGAGGCTATCTCCGACGC
GTTTGCCCTTCCTGTCCATGCATGTCCTGCTCCTGCTAATCTTAGCGGTG
TCGACCGCCTCCTTCGTCCCACCGTCTTCCTCCTTCTCATCCACCTCCTT
CTCCACCTCCTCGTGCGCGTGCGACCATCATAATCGGGGAAAATTCAAAA
AGATGAACCGCGCATCGTCCTCCTCCAACACTACGGCTGTCCTTGCCTCC
TCCTCTTCCTCCCCCTCGCACTCCTCGCCCTCCTCCTCCCGCGAAGCCAC
CAAGACTTGCCGTGCTTGTCTCCAGCAGTATAAATCCAGCGAGAACGGCC
CAACAGCATGTCATCACCACCCAGGCATCTACACGGGTCGGCTGGCCCGA
ATCGACGACGTGGATCCAACAGGAGCAAAGGACTGGTTTTGGTCGTGCTG
TGGCGAGGAGAGGGAACACCGAGGATGCACACAAGATTATCATCGGAGCT
TCGATGACCCGCCAGGGCCATGGCGCAGTGGTTTTCAATAATGAAGTGAA
GGGACATACATCGGAAGAAACAAAATGAAGATTGGTGTATGCATGAGTGT
TGCCAGGAGCCTGCCAAGTGCATGTGTATTTTTAATGAAGTGAATTATTT
GAAACGAAAAGTTTCGGGAAA
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Coding sequence (CDS) from alignment at scaffold_7:836400..837070+

>mRNA_3167 ID=mRNA_3167|Name=jgi.p|Nanoce1779_2|584799|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_7:836400..837070+ (Nannochloropsis oceanica)
ATGGTGAGGAGGCTATCTCCGACGCGTTTGCCCTTCCTGTCCATGCATGT
CCTGCTCCTGCTAATCTTAGCGGTGTCGACCGCCTCCTTCGTCCCACCGT
CTTCCTCCTTCTCATCCACCTCCTTCTCCACCTCCTCGTGCGCGTGCGAC
CATCATAATCGGGGAAAATTCAAAAAGATGAACCGCGCATCGTCCTCCTC
CAACACTACGGCTGTCCTTGCCTCCTCCTCTTCCTCCCCCTCGCACTCCT
CGCCCTCCTCCTCCCGCGAAGCCACCAAGACTTGCCGTGCTTGTCTCCAG
CAGTATAAATCCAGCGAGAACGGCCCAACAGCATGTCATCACCACCCAGG
CATCTACACGGGTCGGCTGGCCCGAATCGACGACGTGGATCCAACAGGAG
CAAAGGACTGGTTTTGGTCGTGCTGTGGCGAGGAGAGGGAACACCGAGGA
TGCACACAAGATTATCATCGGAGCTTCGATGACCCGCCAGGGCCATGGCG
CAGTGGTTTTCAATAA
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Synonyms
Publications