jgi.p|Nanoce1779_2|526481, mRNA_3166 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|526481
Unique Name	mRNA_3166
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1473
Alignment location	scaffold_7:834162..835773 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	526567
Track	FilteredModels2
ProteinId	526481

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:834162..835773 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526481	gene_3166	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526481	mRNA_3166-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3166	CDS_3166	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:834162..835773+
coding sequence from alignment at scaffold_7:834162..835773+

mRNA sequence

>mRNA_3166 ID=mRNA_3166|Name=jgi.p|Nanoce1779_2|526481|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
ATGTCGCGGGCCGCATTATGGAAGGCCGAGCAGCTCCAGGCCGCCCAACC
CAACCTGCCGCCACCTCTCCCTGAGTCTATTTCAGCCAAAGCTTTGCCTA
TTCACGGCAACCAGACCACGTTTAATGTCAACAGTTTGCTCGCAAACAAC
ATCATGAGCTGCGACTACTTCCGGGCACTGTACCCCTTGCAGACGTACCA
TGAGGTGATTGATGAGATTTATCTGAAGTGTACGAATGTGGAGCCATGGG
CGACGGGCACCTCCCGCGTGCCCTCTACGGCATTTTGTCTTTTGTTCAAG
TTCTTCACCATGCGCCTCACCGAAAGACAAATCACCGGCCTGCTCACCCA
CGGAGACTCCCCCTACATCCGAGCAATCGGCTTCCTCTACCTTCGCTTCG
CCCTGGACCCCAAAGAAATGTGGGAATGGTTTGCCCCTTATCTTGATGAC
ACTGAGGAATTCACCCCCTCCTCGGACCCGAACGCTGTGATGACTATTGG
GCAATGGTTGAGGAAGTTGCTATCGGAGTTACAGTACTATAACACGATGC
TCCCCAGGATCCCTGTGCCTATTGAACGGAAAATCAAAATGCGGTTGGTC
CTGTTGGACGAGAAGAAAAAAAGGGCCTCAGCAAACAGACGACACGAGGG
AAAGTTCAGGGAAGGAGTGAGAGTGAAGGCCATATACGAAGATGCTGACA
ATGATCCTGCGTGGTACACGGCGGCGATTAGTGAGGTCTTGGAGGGGGAG
GAGGAGGGCGGGAGGGAAGATGGACCCAGATTTCTAGTAACGTTTGATGG
GTATGGGAACCAGGAGGTGTTGGGGTTGGGGGATATGATGTTAATGGAAG
GAGGGAGGGAAGGAGGGAGGGAAGGAGGAAGAAGCCGGAGTCGCAGCAGG
AGCAGGAGTGTGAGCAATCGATGGAAGAAGAAGGAGAGAGGCAGGAGTGG
AAGCCGGAGCAGGAGCAGGAGCAGGTCGCGAGCGGACCGAGGAGGAGGAC
GACGCCGGCGTGATGGCGATGAGAGCGAATATGAAGGCGGAGATGGTAAT
GGAGGACGGGGGGGAGGAAGAGGGGAAGGTGAGAGTTTACTCGGGCAGAA
TCTGATGGACGCCGTTCGGAGGAGGGAGAGGGAAGCCGCCTCGGCACGGG
GTAAGGATTACGCACAGCGGCCCACTTCTTGCAAGGGATCATTGTCAATG
AAGCATGACACCTACTCCCATCGAGGCAGGAAGCATCCCTCTCAAGACCG
AGACCGCCGTCGTTCTCGTTCCCGCTCTCCGCGCCATTCCTCCTCATCCT
CTCACTCCTCCCGTCAACGCAACCCTACCTCTGATAGAGAGCGAGAACGA
GGAAGGGAGAGGGATCATCACGACAAGGACCGCCCTCAGGCTGCCCCCAA
GCCCGAGTCTCAAAAGCTTAAGGCGCTCAAAGCGGTTTATGGAGATGCCT
CAGCAGTGAAGGAGGGCAAGTAA

protein sequence of jgi.p|Nanoce1779_2|526481

>mRNA_3166-protein ID=mRNA_3166-protein|Name=jgi.p|Nanoce1779_2|526481|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MSRAALWKAEQLQAAQPNLPPPLPESISAKALPIHGNQTTFNVNSLLANN
IMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFK
FFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDD
TEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLV
LLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGE
EEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEGGREGGREGGRSRSRSR
SRSVSNRWKKKERGRSGSRSRSRSRSRADRGGGRRRRDGDESEYEGGDGN
GGRGGGRGEGESLLGQNLMDAVRRREREAASARGKDYAQRPTSCKGSLSM
KHDTYSHRGRKHPSQDRDRRRSRSRSPRHSSSSSHSSRQRNPTSDRERER
GRERDHHDKDRPQAAPKPESQKLKALKAVYGDASAVKEGK*

mRNA from alignment at scaffold_7:834162..835773+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3166 ID=mRNA_3166|Name=jgi.p|Nanoce1779_2|526481|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp|location=Sequence derived from alignment at scaffold_7:834162..835773+ (Nannochloropsis oceanica)
ATGTCGCGGGCCGCATTATGGAAGGCCGAGCAGCTCCAGGCCGCCCAACC
CAACCTGCCGCCACCTCTCCCTGAGTCTATTTCAGCCAAAGCTTTGCCTA
TTCACGGCAACCAGACCACGTTTAATGTCAACAGTTTGCTCGCAAACAAC
ATCATGAGCTGCGACTACTTCCGGGCACTGTACCCCTTGCAGACGTACCA
TGAGGTGATTGATGAGATTTATCTGAAGTGTACGAATGTGGAGCCATGGG
CGACGGGCACCTCCCGCGTGCCCTCTACGGCATTTTGTCTTTTGTTCAAG
TAAGTCCGCCGAGGGAGTGGAAAAGCGAGAGTGGGGTAGAAAAACATGGT
TCAGTCTAGTCTTCTAGTTTCCTGAAAAGTGCATTTGGCATTCAATGACA
CCCTCGCTCCTTTCTACTTTCCCTTCCTCCCTCGCCAGGTTCTTCACCAT
GCGCCTCACCGAAAGACAAATCACCGGCCTGCTCACCCACGGAGACTCCC
CCTACATCCGAGCAATCGGCTTCCTCTACCTTCGCTTCGCCCTGGACCCC
AAAGAAATGTGGGAATGGTTTGCCCCTTATCTTGATGACACTGAGGAATT
CACCCCCTCCTCGGACCCGAACGCTGTGATGACTATTGGGCAATGGTTGA
GGAAGTTGCTATCGGAGTTACAGTACTATAACACGATGCTCCCCAGGATC
CCTGTGCCTATTGAACGGAAAATCAAAATGCGGTTGGTCCTGTTGGACGA
GAAGAAAAAAAGGGCCTCAGCAAACAGACGACACGAGGGAAAGTTCAGGG
AAGGAGTGAGAGTGAAGGCCATATACGAAGATGCTGACAATGATCCTGCG
TGGTACACGGCGGCGATTAGTGAGGTCTTGGAGGGGGAGGAGGAGGGCGG
GAGGGAAGATGGACCCAGATTTCTAGTAACGTTTGATGGGTATGGGAACC
AGGAGGTGTTGGGGTTGGGGGATATGATGTTAATGGAAGGAGGGAGGGAA
GGAGGGAGGGAAGGAGGAAGAAGCCGGAGTCGCAGCAGGAGCAGGAGTGT
GAGCAATCGATGGAAGAAGAAGGAGAGAGGCAGGAGTGGAAGCCGGAGCA
GGAGCAGGAGCAGGTCGCGAGCGGACCGAGGAGGAGGACGACGCCGGCGT
GATGGCGATGAGAGCGAATATGAAGGCGGAGATGGTAATGGAGGACGGGG
GGGAGGAAGAGGGGAAGGTGAGAGTTTACTCGGGCAGAATCTGATGGACG
CCGTTCGGAGGAGGGAGAGGGAAGCCGCCTCGGCACGGGGTAAGGATTAC
GCACAGCGGCCCACTTCTTGCAAGGGATCATTGTCAATGAAGCATGACAC
CTACTCCCATCGAGGCAGGAAGCATCCCTCTCAAGACCGAGACCGCCGTC
GTTCTCGTTCCCGCTCTCCGCGCCATTCCTCCTCATCCTCTCACTCCTCC
CGTCAACGCAACCCTACCTCTGATAGAGAGCGAGAACGAGGAAGGGAGAG
GGATCATCACGACAAGGACCGCCCTCAGGCTGCCCCCAAGCCCGAGTCTC
AAAAGCTTAAGGCGCTCAAAGCGGTTTATGGAGATGCCTCAGCAGTGAAG
GAGGGCAAGTAA

Coding sequence (CDS) from alignment at scaffold_7:834162..835773+

>mRNA_3166 ID=mRNA_3166|Name=jgi.p|Nanoce1779_2|526481|organism=Nannochloropsis oceanica|type=CDS|length=2946bp|location=Sequence derived from alignment at scaffold_7:834162..835773+ (Nannochloropsis oceanica)
ATGTCGCGGGCCGCATTATGGAAGGCCGAGCAGCTCCAGGCCGCCCAACC
CAACCTGCCGCCACCTCTCCCTGAGTCTATTTCAGCCAAAGCTTTGCCTA
TTCACGGCAACCAGACCACGTTTAATGTCAACAGTTTGCTCGCAAACAAC
ATCATGAGCTGCGACTACTTCCGGGCACTGTACCCCTTGCAGACGTACCA
TGAGGTGATTGATGAGATTTATCTGAAGTGTACGAATGTGGAGCCATGGG
CGACGGGCACCTCCCGCGTGCCCTCTACGGCATTTTGTCTTTTGTTCAAG
TTCTTCACCATGCGCCTCACCGAAAGACAAATCACCGGCCTGCTCACCCA
CGGAGACTCCCCCTACATCCGAGCAATCGGCTTCCTCTACCTTCGCTTCG
CCCTGGACCCCAAAGAAATGTGGGAATGGTTTGCCCCTTATCTTGATGAC
ACTGAGGAATTCACCCCCTCCTCGGACCCGAACGCTGTGATGACTATTGG
GCAATGGTTGAGGAAGTTGCTATCGGAGTTACAGTACTATAACACGATGC
TCCCCAGGATCCCTGTGCCTATTGAACGGAAAATCAAAATGCGGTTGGTC
CTGTTGGACGAGAAGAAAAAAAGGGCCTCAGCAAACAGACGACACGAGGG
AAAGTTCAGGGAAGGAGTGAGAGTGAAGGCCATATACGAAGATGCTGACA
ATGATCCTGCGTGGTACACGGCGGCGATTAGTGAGGTCTTGGAGGGGGAG
GAGGAGGGCGGGAGGGAAGATGGACCCAGATTTCTAGTAACGTTTGATGG
GTATGGGAACCAGGAGGTGTTGGGGTTGGGGGATATGATGTTAATGGAAG
GAGGGAGGGAAGGAGGGAGGGAAGGAGGAAGAAGCCGGAGTCGCAGCAGG
AGCAGGAGTGTGAGCAATCGATGGAAGAAGAAGGAGAGAGGCAGGAGTGG
AAGCCGGAGCAGGAGCAGGAGCAGGTCGCGAGCGGACCGAGGAGGAGGAC
GACGCCGGCGTGATGGCGATGAGAGCGAATATGAAGGCGGAGATGGTAAT
GGAGGACGGGGGGGAGGAAGAGGGGAAGGTGAGAGTTTACTCGGGCAGAA
TCTGATGGACGCCGTTCGGAGGAGGGAGAGGGAAGCCGCCTCGGCACGGG
GTAAGGATTACGCACAGCGGCCCACTTCTTGCAAGGGATCATTGTCAATG
AAGCATGACACCTACTCCCATCGAGGCAGGAAGCATCCCTCTCAAGACCG
AGACCGCCGTCGTTCTCGTTCCCGCTCTCCGCGCCATTCCTCCTCATCCT
CTCACTCCTCCCGTCAACGCAACCCTACCTCTGATAGAGAGCGAGAACGA
GGAAGGGAGAGGGATCATCACGACAAGGACCGCCCTCAGGCTGCCCCCAA
GCCCGAGTCTCAAAAGCTTAAGGCGCTCAAAGCGGTTTATGGAGATGCCT
CAGCAGTGAAGGAGGGCAAGTAAATGTCGCGGGCCGCATTATGGAAGGCC
GAGCAGCTCCAGGCCGCCCAACCCAACCTGCCGCCACCTCTCCCTGAGTC
TATTTCAGCCAAAGCTTTGCCTATTCACGGCAACCAGACCACGTTTAATG
TCAACAGTTTGCTCGCAAACAACATCATGAGCTGCGACTACTTCCGGGCA
CTGTACCCCTTGCAGACGTACCATGAGGTGATTGATGAGATTTATCTGAA
GTGTACGAATGTGGAGCCATGGGCGACGGGCACCTCCCGCGTGCCCTCTA
CGGCATTTTGTCTTTTGTTCAAGTTCTTCACCATGCGCCTCACCGAAAGA
CAAATCACCGGCCTGCTCACCCACGGAGACTCCCCCTACATCCGAGCAAT
CGGCTTCCTCTACCTTCGCTTCGCCCTGGACCCCAAAGAAATGTGGGAAT
GGTTTGCCCCTTATCTTGATGACACTGAGGAATTCACCCCCTCCTCGGAC
CCGAACGCTGTGATGACTATTGGGCAATGGTTGAGGAAGTTGCTATCGGA
GTTACAGTACTATAACACGATGCTCCCCAGGATCCCTGTGCCTATTGAAC
GGAAAATCAAAATGCGGTTGGTCCTGTTGGACGAGAAGAAAAAAAGGGCC
TCAGCAAACAGACGACACGAGGGAAAGTTCAGGGAAGGAGTGAGAGTGAA
GGCCATATACGAAGATGCTGACAATGATCCTGCGTGGTACACGGCGGCGA
TTAGTGAGGTCTTGGAGGGGGAGGAGGAGGGCGGGAGGGAAGATGGACCC
AGATTTCTAGTAACGTTTGATGGGTATGGGAACCAGGAGGTGTTGGGGTT
GGGGGATATGATGTTAATGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAG
GAAGAAGCCGGAGTCGCAGCAGGAGCAGGAGTGTGAGCAATCGATGGAAG
AAGAAGGAGAGAGGCAGGAGTGGAAGCCGGAGCAGGAGCAGGAGCAGGTC
GCGAGCGGACCGAGGAGGAGGACGACGCCGGCGTGATGGCGATGAGAGCG
AATATGAAGGCGGAGATGGTAATGGAGGACGGGGGGGAGGAAGAGGGGAA
GGTGAGAGTTTACTCGGGCAGAATCTGATGGACGCCGTTCGGAGGAGGGA
GAGGGAAGCCGCCTCGGCACGGGGTAAGGATTACGCACAGCGGCCCACTT
CTTGCAAGGGATCATTGTCAATGAAGCATGACACCTACTCCCATCGAGGC
AGGAAGCATCCCTCTCAAGACCGAGACCGCCGTCGTTCTCGTTCCCGCTC
TCCGCGCCATTCCTCCTCATCCTCTCACTCCTCCCGTCAACGCAACCCTA
CCTCTGATAGAGAGCGAGAACGAGGAAGGGAGAGGGATCATCACGACAAG
GACCGCCCTCAGGCTGCCCCCAAGCCCGAGTCTCAAAAGCTTAAGGCGCT
CAAAGCGGTTTATGGAGATGCCTCAGCAGTGAAGGAGGGCAAGTAA

Synonyms

Publications