jgi.p|Nanoce1779_2|638287, mRNA_3164 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638287
Unique Name	mRNA_3164
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1593
Alignment location	scaffold_7:817523..819400 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	638373
Track	FilteredModels2
ProteinId	638287

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:817523..819400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638287	gene_3164	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638287	mRNA_3164-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3164	CDS_3164	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:817523..819400+
coding sequence from alignment at scaffold_7:817523..819400+

mRNA sequence

>mRNA_3164 ID=mRNA_3164|Name=jgi.p|Nanoce1779_2|638287|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ATGAAACCCCGCTTTATATCTCCCACTCAAGCCAAAAATCCCCGCGAAGC
AGCGTACCTAGCGGCGCTGGCCGCTGATCGTGAGCAAGCCTTTATTTCCG
ATGCTCTGTCTGAATGGGCCGACGCCAAAGAGCCCTCGGCTTCCGAAATG
GGGCTTGCGACCCTAATTGCCAATGTCGCCTGTCGAGAGGCCAACAGCTT
GGACTATGCCATTGGTGTCCTGGCGAAAGGAGGAGGGGACGGAGCAAAGG
AGGAAAAGGGGAAGAAAAGGGAAAAGTCGGTGAGGTTGAAGGGAAGGCAG
CGGGTGGTCTTGCGGACAGCGTTGGCGCAGTACAAGTACTGCACGCGAAC
CCCTCTATATGCCATTGTCGATCACGCTGTCGAGTTTGCCAAGCAATACG
GCGGCGGTCCCTCTTTCGGCGCCTTCACCAATGCCCTTCTTCGCAAGCTT
CCCCCTGATCCTACCACTGACCGCAACGATGGGGCGCGCCAGCACCAGCA
ACAGCGAGAACAACAATATCTAGTCTTTTCTGCGGAAGAAGGTGATGGAA
GCGACACCCGCCCATTGCCCCTGCCCAAGGGGCACTCGGAAGAGGCTCTC
GCGGTTCGTCTCTCCTACCCGCCCTTCCTCGTCCACCTCTTTATAGAAGA
ATTCGGGAAGGCCAAAGCCAAACTAATCATGGAGGCGGGCAATACATTTC
CACCTACCATGCTTCGTTCCCGTGCTGCTGATGCTGCGGCCCCAGTCCTG
CCACTTGCTGGTTCCGATACAAGAGAGGAGGAGCACGAAAGTGCTTCCGC
CGCTGCTCCTAAATTGTTTCGGCAGCTGACGCAGGACGAAGGATGGTATG
TCACCAACGGGACACCTGCTGGATTGCTGGCGCGGTTGGCGCAAGGCGCT
GTGGCACGCGTCTTTGGTAGTGATGATGCGGGCAAGGGAACGAGGGAAGG
AGGCTTGCGAGTGTTGGATTTATGTGCGGCGCCCGGAGGGAAGGGTTTGG
CAGTGTGGGATGTTATAAGGGAGGGCCAGGGGCACCATACCTTGGCGCTG
GTAATGAATGATGTGAATGAGGAGAAAACAGGGAGAATAAGGGAAAATTT
GAGTAAGTTTGGGCTTGAGGATAAAATTCATTTGACGATTGGGGATGGGT
TGACCCTCACGAGGGAGGAGTTGGGGAGGCAGATGGGATCGAATATTGAG
GGAGAAGGGGGGAAGGAGGAGGGAGGATTTGATGTTGTTATTTTGGATGC
GCCGTGCTCCAATGCGGGGGTGTTGGGGAGGCGGCCAGAGGCTCGCTGGC
GGTTGCGTGATGAAGCATTGCTAAGAGAACTTGAGGAGACACAGTTTTCG
TTGTTGAAGCACGCGAGTGAAGAGCTTTTGTCGGGAACGAGCCCACGGGG
GGAAATATGGTATATGACGTGCTCAATTTTGAAGGGGGAGGATGAGGGGA
TGGTGGAGCGGGCGTGTCGGGAGTTGGGATTGGAGGTGGTAGTTGAGGGA
GGGAAAGATCTGATGATGAAGGTTTTGCCGGGGGAGGGGCAAGGAGGGGC
GTTTGATGGTGGGTTTGGATGTGCCTTGCGGAGAAGGAGCTGA

protein sequence of jgi.p|Nanoce1779_2|638287

>mRNA_3164-protein ID=mRNA_3164-protein|Name=jgi.p|Nanoce1779_2|638287|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MKPRFISPTQAKNPREAAYLAALAADREQAFISDALSEWADAKEPSASEM
GLATLIANVACREANSLDYAIGVLAKGGGDGAKEEKGKKREKSVRLKGRQ
RVVLRTALAQYKYCTRTPLYAIVDHAVEFAKQYGGGPSFGAFTNALLRKL
PPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEAL
AVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVL
PLAGSDTREEEHESASAAAPKLFRQLTQDEGWYVTNGTPAGLLARLAQGA
VARVFGSDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLAL
VMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIE
GEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFS
LLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEG
GKDLMMKVLPGEGQGGAFDGGFGCALRRRS*

mRNA from alignment at scaffold_7:817523..819400+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3164 ID=mRNA_3164|Name=jgi.p|Nanoce1779_2|638287|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp|location=Sequence derived from alignment at scaffold_7:817523..819400+ (Nannochloropsis oceanica)
ATGAAACCCCGCTTTATATCTCCCACTCAAGCCAAAAATCCCCGCGAAGC
AGCGTACCTAGCGGCGCTGGCCGCTGATCGTGAGCAAGCCTTTATTTCCG
ATGCTCTGTCTGAATGGGCCGACGCCAAAGAGCCCTCGGCTTCCGAAATG
GGGCTTGCGACCCTAATTGCCAATGTCGCCTGTCGAGAGGCCAACAGCTT
GGACTATGCCATTGGTGTCCTGGCGAAAGGAGGAGGGGACGGAGCAAAGG
AGGAAAAGGGGAAGAAAAGGGAAAAGTCGGTGAGGTTGAAGGGAAGGCAG
CGGGTGGTCTTGCGGACAGCGTTGGCGCAGTACAAGTGGGTTTAAGGGAA
GGGAGGAAGGGAGGGTAGGAGAGGGCAAGGGAGCGATACGGAAGGACCAT
GTTTCGATGTCGATCCAAGAGAGGATGCGTGACCTCTATATTGCGTAGCA
CCGACGACTCTCCCTCCCTTCCTCTCCCTCCACAAAAGGTACTGCACGCG
AACCCCTCTATATGCCATTGTCGATCACGCTGTCGAGTTTGCCAAGCAAT
ACGGCGGCGGTCCCTCTTTCGGCGCCTTCACCAATGCCCTTCTTCGCAAG
CTTCCCCCTGATCCTACCACTGACCGCAACGATGGGGCGCGCCAGCACCA
GCAACAGCGAGAACAACAATATCTAGTCTTTTCTGCGGAAGAAGGTGATG
GAAGCGACACCCGCCCATTGCCCCTGCCCAAGGGGCACTCGGAAGAGGCT
CTCGCGGTTCGTCTCTCCTACCCGCCCTTCCTCGTCCACCTCTTTATAGA
AGAATTCGGGAAGGCCAAAGCCAAACTAATCATGGAGGCGGGCAATACAT
TTCCACCTACCATGCTTCGTTCCCGTGCTGCTGATGCTGCGGCCCCAGTC
CTGCCACTTGCTGGTTCCGATACAAGAGAGGAGGAGCACGAAAGTGCTTC
CGCCGCTGCTCCTGTAGCAGGGCCAGCGCCAATGAGTGGTGCTTCAAAAT
CACTCAAACTTCCCTGGACAACAGTAAATAATCTCCCTCCTGCCTTGCAT
ACCCCGCTCCCACTCCCTTACACTCTTGGTGTCGTCCGTTCGGAGAAATT
GTTTCGGCAGCTGACGCAGGACGAAGGATGGTATGTCACCAACGGGACAC
CTGCTGGATTGCTGGCGCGGTTGGCGCAAGGCGCTGTGGCACGCGTCTTT
GGTAGTGATGATGCGGGCAAGGGAACGAGGGAAGGAGGCTTGCGAGTGTT
GGATTTATGTGCGGCGCCCGGAGGGAAGGGTTTGGCAGTGTGGGATGTTA
TAAGGGAGGGCCAGGGGCACCATACCTTGGCGCTGGTAATGAATGATGTG
AATGAGGAGAAAACAGGGAGAATAAGGGAAAATTTGAGTAAGTTTGGGCT
TGAGGATAAAATTCATTTGACGATTGGGGATGGGTTGACCCTCACGAGGG
AGGAGTTGGGGAGGCAGATGGGATCGAATATTGAGGGAGAAGGGGGGAAG
GAGGAGGGAGGATTTGATGTTGTTATTTTGGATGCGCCGTGCTCCAATGC
GGGGGTGTTGGGGAGGCGGCCAGAGGCTCGCTGGCGGTTGCGTGATGAAG
CATTGCTAAGAGAACTTGAGGAGACACAGTTTTCGTTGTTGAAGCACGCG
AGTGAAGAGCTTTTGTCGGGAACGAGCCCACGGGGGGAAATATGGTATAT
GACGTGCTCAATTTTGAAGGGGGAGGATGAGGGGATGGTGGAGCGGGCGT
GTCGGGAGTTGGGATTGGAGGTGGTAGTTGAGGGAGGGAAAGATCTGATG
ATGAAGGTTTTGCCGGGGGAGGGGCAAGGAGGGGCGTTTGATGGTGGGTT
TGGATGTGCCTTGCGGAGAAGGAGCTGA

Coding sequence (CDS) from alignment at scaffold_7:817523..819400+

>mRNA_3164 ID=mRNA_3164|Name=jgi.p|Nanoce1779_2|638287|organism=Nannochloropsis oceanica|type=CDS|length=4779bp|location=Sequence derived from alignment at scaffold_7:817523..819400+ (Nannochloropsis oceanica)
ATGAAACCCCGCTTTATATCTCCCACTCAAGCCAAAAATCCCCGCGAAGC
AGCGTACCTAGCGGCGCTGGCCGCTGATCGTGAGCAAGCCTTTATTTCCG
ATGCTCTGTCTGAATGGGCCGACGCCAAAGAGCCCTCGGCTTCCGAAATG
GGGCTTGCGACCCTAATTGCCAATGTCGCCTGTCGAGAGGCCAACAGCTT
GGACTATGCCATTGGTGTCCTGGCGAAAGGAGGAGGGGACGGAGCAAAGG
AGGAAAAGGGGAAGAAAAGGGAAAAGTCGGTGAGGTTGAAGGGAAGGCAG
CGGGTGGTCTTGCGGACAGCGTTGGCGCAGTACAAGTACTGCACGCGAAC
CCCTCTATATGCCATTGTCGATCACGCTGTCGAGTTTGCCAAGCAATACG
GCGGCGGTCCCTCTTTCGGCGCCTTCACCAATGCCCTTCTTCGCAAGCTT
CCCCCTGATCCTACCACTGACCGCAACGATGGGGCGCGCCAGCACCAGCA
ACAGCGAGAACAACAATATCTAGTCTTTTCTGCGGAAGAAGGTGATGGAA
GCGACACCCGCCCATTGCCCCTGCCCAAGGGGCACTCGGAAGAGGCTCTC
GCGGTTCGTCTCTCCTACCCGCCCTTCCTCGTCCACCTCTTTATAGAAGA
ATTCGGGAAGGCCAAAGCCAAACTAATCATGGAGGCGGGCAATACATTTC
CACCTACCATGCTTCGTTCCCGTGCTGCTGATGCTGCGGCCCCAGTCCTG
CCACTTGCTGGTTCCGATACAAGAGAGGAGGAGCACGAAAGTGCTTCCGC
CGCTGCTCCTAAATTGTTTCGGCAGCTGACGCAGGACGAAGGATGGTATG
TCACCAACGGGACACCTGCTGGATTGCTGGCGCGGTTGGCGCAAGGCGCT
GTGGCACGCGTCTTTGGTAGTGATGATGCGGGCAAGGGAACGAGGGAAGG
AGGCTTGCGAGTGTTGGATTTATGTGCGGCGCCCGGAGGGAAGGGTTTGG
CAGTGTGGGATGTTATAAGGGAGGGCCAGGGGCACCATACCTTGGCGCTG
GTAATGAATGATGTGAATGAGGAGAAAACAGGGAGAATAAGGGAAAATTT
GAGTAAGTTTGGGCTTGAGGATAAAATTCATTTGACGATTGGGGATGGGT
TGACCCTCACGAGGGAGGAGTTGGGGAGGCAGATGGGATCGAATATTGAG
GGAGAAGGGGGGAAGGAGGAGGGAGGATTTGATGTTGTTATTTTGGATGC
GCCGTGCTCCAATGCGGGGGTGTTGGGGAGGCGGCCAGAGGCTCGCTGGC
GGTTGCGTGATGAAGCATTGCTAAGAGAACTTGAGGAGACACAGTTTTCG
TTGTTGAAGCACGCGAGTGAAGAGCTTTTGTCGGGAACGAGCCCACGGGG
GGAAATATGGTATATGACGTGCTCAATTTTGAAGGGGGAGGATGAGGGGA
TGGTGGAGCGGGCGTGTCGGGAGTTGGGATTGGAGGTGGTAGTTGAGGGA
GGGAAAGATCTGATGATGAAGGTTTTGCCGGGGGAGGGGCAAGGAGGGGC
GTTTGATGGTGGGTTTGGATGTGCCTTGCGGAGAAGGAGCTGAATGAAAC
CCCGCTTTATATCTCCCACTCAAGCCAAAAATCCCCGCGAAGCAGCGTAC
CTAGCGGCGCTGGCCGCTGATCGTGAGCAAGCCTTTATTTCCGATGCTCT
GTCTGAATGGGCCGACGCCAAAGAGCCCTCGGCTTCCGAAATGGGGCTTG
CGACCCTAATTGCCAATGTCGCCTGTCGAGAGGCCAACAGCTTGGACTAT
GCCATTGGTGTCCTGGCGAAAGGAGGAGGGGACGGAGCAAAGGAGGAAAA
GGGGAAGAAAAGGGAAAAGTCGGTGAGGTTGAAGGGAAGGCAGCGGGTGG
TCTTGCGGACAGCGTTGGCGCAGTACAAGTACTGCACGCGAACCCCTCTA
TATGCCATTGTCGATCACGCTGTCGAGTTTGCCAAGCAATACGGCGGCGG
TCCCTCTTTCGGCGCCTTCACCAATGCCCTTCTTCGCAAGCTTCCCCCTG
ATCCTACCACTGACCGCAACGATGGGGCGCGCCAGCACCAGCAACAGCGA
GAACAACAATATCTAGTCTTTTCTGCGGAAGAAGGTGATGGAAGCGACAC
CCGCCCATTGCCCCTGCCCAAGGGGCACTCGGAAGAGGCTCTCGCGGTTC
GTCTCTCCTACCCGCCCTTCCTCGTCCACCTCTTTATAGAAGAATTCGGG
AAGGCCAAAGCCAAACTAATCATGGAGGCGGGCAATACATTTCCACCTAC
CATGCTTCGTTCCCGTGCTGCTGATGCTGCGGCCCCAGTCCTGCCACTTG
CTGGTTCCGATACAAGAGAGGAGGAGCACGAAAGTGCTTCCGCCGCTGCT
CCTAAATTGTTTCGGCAGCTGACGCAGGACGAAGGATGGTATGTCACCAA
CGGGACACCTGCTGGATTGCTGGCGCGGTTGGCGCAAGGCGCTGTGGCAC
GCGTCTTTGGTAGTGATGATGCGGGCAAGGGAACGAGGGAAGGAGGCTTG
CGAGTGTTGGATTTATGTGCGGCGCCCGGAGGGAAGGGTTTGGCAGTGTG
GGATGTTATAAGGGAGGGCCAGGGGCACCATACCTTGGCGCTGGTAATGA
ATGATGTGAATGAGGAGAAAACAGGGAGAATAAGGGAAAATTTGAGTAAG
TTTGGGCTTGAGGATAAAATTCATTTGACGATTGGGGATGGGTTGACCCT
CACGAGGGAGGAGTTGGGGAGGCAGATGGGATCGAATATTGAGGGAGAAG
GGGGGAAGGAGGAGGGAGGATTTGATGTTGTTATTTTGGATGCGCCGTGC
TCCAATGCGGGGGTGTTGGGGAGGCGGCCAGAGGCTCGCTGGCGGTTGCG
TGATGAAGCATTGCTAAGAGAACTTGAGGAGACACAGTTTTCGTTGTTGA
AGCACGCGAGTGAAGAGCTTTTGTCGGGAACGAGCCCACGGGGGGAAATA
TGGTATATGACGTGCTCAATTTTGAAGGGGGAGGATGAGGGGATGGTGGA
GCGGGCGTGTCGGGAGTTGGGATTGGAGGTGGTAGTTGAGGGAGGGAAAG
ATCTGATGATGAAGGTTTTGCCGGGGGAGGGGCAAGGAGGGGCGTTTGAT
GGTGGGTTTGGATGTGCCTTGCGGAGAAGGAGCTGAATGAAACCCCGCTT
TATATCTCCCACTCAAGCCAAAAATCCCCGCGAAGCAGCGTACCTAGCGG
CGCTGGCCGCTGATCGTGAGCAAGCCTTTATTTCCGATGCTCTGTCTGAA
TGGGCCGACGCCAAAGAGCCCTCGGCTTCCGAAATGGGGCTTGCGACCCT
AATTGCCAATGTCGCCTGTCGAGAGGCCAACAGCTTGGACTATGCCATTG
GTGTCCTGGCGAAAGGAGGAGGGGACGGAGCAAAGGAGGAAAAGGGGAAG
AAAAGGGAAAAGTCGGTGAGGTTGAAGGGAAGGCAGCGGGTGGTCTTGCG
GACAGCGTTGGCGCAGTACAAGTACTGCACGCGAACCCCTCTATATGCCA
TTGTCGATCACGCTGTCGAGTTTGCCAAGCAATACGGCGGCGGTCCCTCT
TTCGGCGCCTTCACCAATGCCCTTCTTCGCAAGCTTCCCCCTGATCCTAC
CACTGACCGCAACGATGGGGCGCGCCAGCACCAGCAACAGCGAGAACAAC
AATATCTAGTCTTTTCTGCGGAAGAAGGTGATGGAAGCGACACCCGCCCA
TTGCCCCTGCCCAAGGGGCACTCGGAAGAGGCTCTCGCGGTTCGTCTCTC
CTACCCGCCCTTCCTCGTCCACCTCTTTATAGAAGAATTCGGGAAGGCCA
AAGCCAAACTAATCATGGAGGCGGGCAATACATTTCCACCTACCATGCTT
CGTTCCCGTGCTGCTGATGCTGCGGCCCCAGTCCTGCCACTTGCTGGTTC
CGATACAAGAGAGGAGGAGCACGAAAGTGCTTCCGCCGCTGCTCCTAAAT
TGTTTCGGCAGCTGACGCAGGACGAAGGATGGTATGTCACCAACGGGACA
CCTGCTGGATTGCTGGCGCGGTTGGCGCAAGGCGCTGTGGCACGCGTCTT
TGGTAGTGATGATGCGGGCAAGGGAACGAGGGAAGGAGGCTTGCGAGTGT
TGGATTTATGTGCGGCGCCCGGAGGGAAGGGTTTGGCAGTGTGGGATGTT
ATAAGGGAGGGCCAGGGGCACCATACCTTGGCGCTGGTAATGAATGATGT
GAATGAGGAGAAAACAGGGAGAATAAGGGAAAATTTGAGTAAGTTTGGGC
TTGAGGATAAAATTCATTTGACGATTGGGGATGGGTTGACCCTCACGAGG
GAGGAGTTGGGGAGGCAGATGGGATCGAATATTGAGGGAGAAGGGGGGAA
GGAGGAGGGAGGATTTGATGTTGTTATTTTGGATGCGCCGTGCTCCAATG
CGGGGGTGTTGGGGAGGCGGCCAGAGGCTCGCTGGCGGTTGCGTGATGAA
GCATTGCTAAGAGAACTTGAGGAGACACAGTTTTCGTTGTTGAAGCACGC
GAGTGAAGAGCTTTTGTCGGGAACGAGCCCACGGGGGGAAATATGGTATA
TGACGTGCTCAATTTTGAAGGGGGAGGATGAGGGGATGGTGGAGCGGGCG
TGTCGGGAGTTGGGATTGGAGGTGGTAGTTGAGGGAGGGAAAGATCTGAT
GATGAAGGTTTTGCCGGGGGAGGGGCAAGGAGGGGCGTTTGATGGTGGGT
TTGGATGTGCCTTGCGGAGAAGGAGCTGA

Synonyms

Publications