jgi.p|Nanoce1779_2|584779, mRNA_3163 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584779
Unique Name	mRNA_3163
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2331
Alignment location	scaffold_7:815963..818601 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584865
Track	FilteredModels2
ProteinId	584779

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:815963..818601 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584779	gene_3163	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584779	mRNA_3163-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3163	CDS_3163	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:815963..818601+
coding sequence from alignment at scaffold_7:815963..818601+

mRNA sequence

>mRNA_3163 ID=mRNA_3163|Name=jgi.p|Nanoce1779_2|584779|organism=Nannochloropsis oceanica|type=mRNA|length=2331bp
GTCCCCCGTCCCCCCGTCCCCATCTCTCAACACCAACTCCACCGTCCTAA
AGCTAAAGCTAATTGATTACTCCCTGCGCACACCTACAGGTGCACAACCT
CTCCACAACCATCCCAATCAGCATGTTGCTGAGGCATCTTACACGTTTCT
CGACCCGTGTGGCCACCACGACGTCCACCATTCTTCCTTCCGGCTGCAGC
GTCATCGGCGGCAGCAGCAGCGGCAGACGGTCCTTCGCCGCGGCAGCGGC
AGGAGGGAGCGACAAGGTGCAGCTGGTCGAGGACTTCAAGGCTTTTTCCG
ACGCGACCACGACGAATGAGCGTTCAGTGGCCTACTTTACAGCCTCCTGG
TGCCCCCCATGCCGGACCATCTCCCCCGTGTTTGCCACGTTGAGCGGAAA
GCATGTGGACGTGAAGTTCTTAAAAGTAGATGTTGACGCCAACGAAGAAG
CGGCAAGCAAGAGCAATATTCGGACCATTCCCGCTTTTCACTTTTATAGG
AAGGGCAAGCTTGTTGGCACCTTTGCTGGGGCCGATCAGAAAAAACTCGC
AGAGGGAATTGAGGACTTGGAATCTCGCCCTTGAGGTGGAAGGGACGGAG
GGACGAAAGGGGAGAGATTGGGAATATTAGTCAAAAATAAATGAAGCATA
AGGCGTGTAGCGTGTACGTAGGACGAAAAAGTAGAAAATACATGAGCAGC
GGCCTTTATGGCGCATTTTCAGGTTTAATGTGACTAAATCGAAAGAACCT
TGCGAGAGGGGGTTATGTCCGCAATAGCCAGGTGAAAGATGAAGCAAGAA
ACAAAGCGGCATCTTTCTTTCCGATTGTGCGTGAGAACGGCAGCGAAGCC
TATTTTTGACACGACGACGGTGATGGCGGGACGAGAGAGAATGAAAATAA
TGTATACGACGGCAAAACACTGAATTCTGCGCGTTCAGATTCCACCCTAG
TCCTGTGTACATTCTAAGGCAGGAGGTTTGCATGCTGCTGCTGCGCGGGA
ATGCGCTTACTGTTTTTTTTTTTTGTCATTTTTCCAGGCTTGCTAAACTC
TCTTCCCTCCATTCCCCCCTTCTCTTCCCACACAGGGGGTCATGTCATCG
GGTCTGAAGGGAAAAGAGGCGAGGCGCTAAGAAAGCAAACCTCAAGAACA
AGAAGAAGAAGGACAAAGATAGGAAGCCGCTATAGCTTCAACAACAGCAC
TGCCACCAACAGCAATAGCGGCAGCGAGAGGATGCACATTCTTTTTCTCG
TCCTCCTTCTTTCTCTTTTCGACCACTCGTCCGCCTTCAGCACCAATAAT
CCCCCTGCCCCCTCGTCCCCCCGCCGCTGGAAAAAAAAGCCTAAAGCCTC
CCTTTCCCCCCCTTCCCCCCCTTCCAATCCTTCCTCCCCCGACGGTTCCC
CCCGAATGAAACCCCGCTTTATATCTCCCACTCAAGCCAAAAATCCCCGC
GAAGCAGCGTACCTAGCGGCGCTGGCCGCTGATCGTGAGCAAGCCTTTAT
TTCCGATGCTCTGTCTGAATGGGCCGACGCCAAAGAGCCCTCGGCTTCCG
AAATGGGGCTTGCGACCCTAATTGCCAATGTCGCCTGTCGAGAGGCCAAC
AGCTTGGACTATGCCATTGGTGTCCTGGCGAAAGGAGGAGGGGACGGAGC
AAAGGAGGAAAAGGGGAAGAAAAGGGAAAAGTCGGTGAGGTTGAAGGGAA
GGCAGCGGGTGGTCTTGCGGACAGCGTTGGCGCAGTACAAGTACTGCACG
CGAACCCCTCTATATGCCATTGTCGATCACGCTGTCGAGTTTGCCAAGCA
ATACGGCGGCGGTCCCTCTTTCGGCGCCTTCACCAATGCCCTTCTTCGCA
AGCTTCCCCCTGATCCTACCACTGACCGCAACGATGGGGCGCGCCAGCAC
CAGCAACAGCGAGAACAACAATATCTAGTCTTTTCTGCGGAAGAAGGTGA
TGGAAGCGACACCCGCCCATTGCCCCTGCCCAAGGGGCACTCGGAAGAGG
CTCTCGCGGTTCGTCTCTCCTACCCGCCCTTCCTCGTCCACCTCTTTATA
GAAGAATTCGGGAAGGCCAAAGCCAAACTAATCATGGAGGCGGGCAATAC
ATTTCCACCTACCATGCTTCGTTCCCGTGCTGCTGATGCTGCGGCCCCAG
TCCTGCCACTTGCTGGTTCCGATACAAGAGAGGAGGAGCACGAAAGTGCT
TCCGCCGCTGCTCCTGTAGCAGGGCCAGCGCCAATGAGTGGTGCTTCAAA
ATCACTCAAACTTCCCTGGACAACAGTAAATAATCTCCCTCCTGCCTTGC
ATACCCCGCTCCCACTCCCTTACACTCTTGG

protein sequence of jgi.p|Nanoce1779_2|584779

>mRNA_3163-protein ID=mRNA_3163-protein|Name=jgi.p|Nanoce1779_2|584779|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MLLRHLTRFSTRVATTTSTILPSGCSVIGGSSSGRRSFAAAAAGGSDKVQ
LVEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFL
KVDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADQKKLAEGIEDLE
SRP*

mRNA from alignment at scaffold_7:815963..818601+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3163 ID=mRNA_3163|Name=jgi.p|Nanoce1779_2|584779|organism=Nannochloropsis oceanica|type=mRNA|length=2639bp|location=Sequence derived from alignment at scaffold_7:815963..818601+ (Nannochloropsis oceanica)
GTCCCCCGTCCCCCCGTCCCCATCTCTCAACACCAACTCCACCGTCCTAA
AGCTAAAGCTAATTGATTACTCCCTGCGCACACCTACAGGTGCACAACCT
CTCCACAACCATCCCAATCAGCATGTTGCTGAGGCATCTTACACGTTTCT
CGACCCGTGTGGCCACCACGACGTCCACCATTCTTCCTTCCGGCTGCAGC
GTCATCGGCGGCAGCAGCAGCGGCAGACGGTCCTTCGCCGCGGCAGCGGC
AGGAGGGAGCGACAAGGTGCAGCTGGTCGAGGACTTCAAGGCTTTTTCCG
ACGCGACCACGACGAATGAGCGTTCAGTGGCCTACTTTACAGCCTCCTGG
TGCCCCCCATGCCGGACCATCTCCCCCGTGTTTGCCACGTTGAGCGGAAA
GCATGTGGACGTGAAGTTCTTAAAAGTAGATGTGAGTAGGGGAAATGGGA
AAGGGCGCGGATAGAAAAGGGGTTGATGGAGTATTGACCTAAGCGGTGCC
TGAGGAACGGATCAAGACTCTGAAAATCTGCATTCCTTGACACATTCCTC
TGTCGTCCCCTCCTCCTTCTTTTCCCTCCCCCTCAGGTTGACGCCAACGA
AGAAGCGGCAAGCAAGAGCAATATTCGGACCATTCCCGCTTTTCACTTTT
ATAGGAAGGGCAAGCTTGTTGGCACCTTTGCTGGGGCCGATCAGAAAAAA
CTCGCAGAGGGAATTGAGGACTTGGAATCTCGCCCTTGAGGTGGAAGGGA
CGGAGGGACGAAAGGGGAGAGATTGGGAATATTAGTCAAAAATAAATGAA
GCATAAGGCGTGTAGCGTGTACGTAGGACGAAAAAGTAGAAAATACATGA
GCAGCGGCCTTTATGGCGCATTTTCAGGTTTAATGTGACTAAATCGAAAG
AACCTTGCGAGAGGGGGTTATGTCCGCAATAGCCAGGTGAAAGATGAAGC
AAGAAACAAAGCGGCATCTTTCTTTCCGATTGTGCGTGAGAACGGCAGCG
AAGCCTATTTTTGACACGACGACGGTGATGGCGGGACGAGAGAGAATGAA
AATAATGTATACGACGGCAAAACACTGAATTCTGCGCGTTCAGATTCCAC
CCTAGTCCTGTGTACATTCTAAGGCAGGAGGTTTGCATGCTGCTGCTGCG
CGGGAATGCGCTTACTGTTTTTTTTTTTTGTCATTTTTCCAGGCTTGCTA
AACTCTCTTCCCTCCATTCCCCCCTTCTCTTCCCACACAGGGGGTCATGT
CATCGGGTCTGAAGGGAAAAGAGGCGAGGCGCTAAGAAAGCAAACCTCAA
GAACAAGAAGAAGAAGGACAAAGATAGGAAGCCGCTATAGCTTCAACAAC
AGCACTGCCACCAACAGCAATAGCGGCAGCGAGAGGATGCACATTCTTTT
TCTCGTCCTCCTTCTTTCTCTTTTCGACCACTCGTCCGCCTTCAGCACCA
ATAATCCCCCTGCCCCCTCGTCCCCCCGCCGCTGGAAAAAAAAGCCTAAA
GCCTCCCTTTCCCCCCCTTCCCCCCCTTCCAATCCTTCCTCCCCCGACGG
TTCCCCCCGAATGAAACCCCGCTTTATATCTCCCACTCAAGCCAAAAATC
CCCGCGAAGCAGCGTACCTAGCGGCGCTGGCCGCTGATCGTGAGCAAGCC
TTTATTTCCGATGCTCTGTCTGAATGGGCCGACGCCAAAGAGCCCTCGGC
TTCCGAAATGGGGCTTGCGACCCTAATTGCCAATGTCGCCTGTCGAGAGG
CCAACAGCTTGGACTATGCCATTGGTGTCCTGGCGAAAGGAGGAGGGGAC
GGAGCAAAGGAGGAAAAGGGGAAGAAAAGGGAAAAGTCGGTGAGGTTGAA
GGGAAGGCAGCGGGTGGTCTTGCGGACAGCGTTGGCGCAGTACAAGTGGG
TTTAAGGGAAGGGAGGAAGGGAGGGTAGGAGAGGGCAAGGGAGCGATACG
GAAGGACCATGTTTCGATGTCGATCCAAGAGAGGATGCGTGACCTCTATA
TTGCGTAGCACCGACGACTCTCCCTCCCTTCCTCTCCCTCCACAAAAGGT
ACTGCACGCGAACCCCTCTATATGCCATTGTCGATCACGCTGTCGAGTTT
GCCAAGCAATACGGCGGCGGTCCCTCTTTCGGCGCCTTCACCAATGCCCT
TCTTCGCAAGCTTCCCCCTGATCCTACCACTGACCGCAACGATGGGGCGC
GCCAGCACCAGCAACAGCGAGAACAACAATATCTAGTCTTTTCTGCGGAA
GAAGGTGATGGAAGCGACACCCGCCCATTGCCCCTGCCCAAGGGGCACTC
GGAAGAGGCTCTCGCGGTTCGTCTCTCCTACCCGCCCTTCCTCGTCCACC
TCTTTATAGAAGAATTCGGGAAGGCCAAAGCCAAACTAATCATGGAGGCG
GGCAATACATTTCCACCTACCATGCTTCGTTCCCGTGCTGCTGATGCTGC
GGCCCCAGTCCTGCCACTTGCTGGTTCCGATACAAGAGAGGAGGAGCACG
AAAGTGCTTCCGCCGCTGCTCCTGTAGCAGGGCCAGCGCCAATGAGTGGT
GCTTCAAAATCACTCAAACTTCCCTGGACAACAGTAAATAATCTCCCTCC
TGCCTTGCATACCCCGCTCCCACTCCCTTACACTCTTGG

Coding sequence (CDS) from alignment at scaffold_7:815963..818601+

>mRNA_3163 ID=mRNA_3163|Name=jgi.p|Nanoce1779_2|584779|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_7:815963..818601+ (Nannochloropsis oceanica)
ATGTTGCTGAGGCATCTTACACGTTTCTCGACCCGTGTGGCCACCACGAC
GTCCACCATTCTTCCTTCCGGCTGCAGCGTCATCGGCGGCAGCAGCAGCG
GCAGACGGTCCTTCGCCGCGGCAGCGGCAGGAGGGAGCGACAAGGTGCAG
CTGGTCGAGGACTTCAAGGCTTTTTCCGACGCGACCACGACGAATGAGCG
TTCAGTGGCCTACTTTACAGCCTCCTGGTGCCCCCCATGCCGGACCATCT
CCCCCGTGTTTGCCACGTTGAGCGGAAAGCATGTGGACGTGAAGTTCTTA
AAAGTAGATGTTGACGCCAACGAAGAAGCGGCAAGCAAGAGCAATATTCG
GACCATTCCCGCTTTTCACTTTTATAGGAAGGGCAAGCTTGTTGGCACCT
TTGCTGGGGCCGATCAGAAAAAACTCGCAGAGGGAATTGAGGACTTGGAA
TCTCGCCCTTGAATGTTGCTGAGGCATCTTACACGTTTCTCGACCCGTGT
GGCCACCACGACGTCCACCATTCTTCCTTCCGGCTGCAGCGTCATCGGCG
GCAGCAGCAGCGGCAGACGGTCCTTCGCCGCGGCAGCGGCAGGAGGGAGC
GACAAGGTGCAGCTGGTCGAGGACTTCAAGGCTTTTTCCGACGCGACCAC
GACGAATGAGCGTTCAGTGGCCTACTTTACAGCCTCCTGGTGCCCCCCAT
GCCGGACCATCTCCCCCGTGTTTGCCACGTTGAGCGGAAAGCATGTGGAC
GTGAAGTTCTTAAAAGTAGATGTTGACGCCAACGAAGAAGCGGCAAGCAA
GAGCAATATTCGGACCATTCCCGCTTTTCACTTTTATAGGAAGGGCAAGC
TTGTTGGCACCTTTGCTGGGGCCGATCAGAAAAAACTCGCAGAGGGAATT
GAGGACTTGGAATCTCGCCCTTGA

Synonyms

Publications