jgi.p|Nanoce1779_2|584772, mRNA_3162 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584772
Unique NamemRNA_3162
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length710
Alignment locationscaffold_7:814249..815704 -

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Properties
Property NameValue
TranscriptId584858
TrackFilteredModels2
ProteinId584772
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:814249..815704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584772gene_3162Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584772mRNA_3162-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3162CDS_3162Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3162 ID=mRNA_3162|Name=jgi.p|Nanoce1779_2|584772|organism=Nannochloropsis oceanica|type=mRNA|length=710bp
CAGGGCAAATGGCTTCTCGGCACACCATCCTCCTGGTCCAGCCTACGCGT
GTGGCGGCGTCCCGCACGTTCTTCGACTTCCCCACGGTCTATGAGGCCAT
GGACGAGGTAGTGAAGATGTACGAGAAACAGCTCAAGCAACTAAACCCTA
CCATCCCGCATATAACCTATGACATCTCGCACTTGCTGCGGTTCGTGGAT
GACCTCGCCGACATCTCCGCCCTCGTCTTTGATCCCCGCACGAAGCAATA
CTCGCCGCACTCCAAAGAGTGGGTCAAGAGCAAGATCTACGAGAATTTGA
AGCAGCAAGCCGGTGGGGGACGCTAGATGACGGAATGAAGGGAGGAAAGG
AGGGACTGAGGGATTGTGAAGGATGGAGGAAGGGATGAGAATGAGCAGTG
GATGAGGGGCGTGAGGTCAGGCGCCACGTTGGTCAAGAGAGGGGGCATTA
GATCGAAGAAATAGAAAGACAAGAAGAAGTAACAAAAGATGAAGATGAAT
ACGCTATATGCGGGTATCTGTATCTACGAGAAGAAGAGGATTTGCCTTGC
TCAAAGGAGGCAAGACATAAGAGGTATCTCTTCTTTCTTTCGAGAGGAGG
GAGACCAGAGGGAAGCTCAACGCTTCGTGTGTAAGCCCGCGTCCATGGCT
CGCGTTCTATCACTTTTCTTTCGATCAATTCTAACTGCTGCTGCTAATGT
TGCTGCTTCC
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protein sequence of jgi.p|Nanoce1779_2|584772

>mRNA_3162-protein ID=mRNA_3162-protein|Name=jgi.p|Nanoce1779_2|584772|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIP
HITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQ
AGGGR*
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mRNA from alignment at scaffold_7:814249..815704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3162 ID=mRNA_3162|Name=jgi.p|Nanoce1779_2|584772|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp|location=Sequence derived from alignment at scaffold_7:814249..815704- (Nannochloropsis oceanica)
CAGGGCAAATGGCTTCTCGGCACACCATCCTCCTGGTCCAGCCTACGCGT
GTGGCGGCGTCCCGCACGTTCTTCGACTTCCCCACGGTCTATGAGGCCAT
GGACGGTACGTAAAGATAGAAGGCAGCCCCTCCCCGTCCTTTCTCCCGTG
CTTCCAGTCCCGTGGTGCTTGTGTGTATGCTCTTCCATGCCTTCGTGTAA
GGAATGAATTTTGCTGCTTCGGATGTGCTTGCTTTGCTCGGAGTTGCGAC
TTCGTCGGCACCATGAGACCCGCCGAGACAGAGCAGCTCCCCGAGCCTAG
CTTCCCTTCTCTTGCACTTACTTCCAAACCCACGTTACCTCCTGAGTAAG
AGATAATTAAAACCTGCCTCCTCGCTTCCATTCTATTTTGGCACCAAAAA
ACACAGAGGTAGTGAAGATGTACGAGAAACAGCTCAAGCAACTAAACCCT
ACCATCCCGCATATAACCTATGACATCTCGGTACGTCGTTCTTATGGGGT
GGTTTGAAGGCTTGGTCGGACATGAATGTGTGTATGCTTCGTGCGTTGAC
ATCAGCAATGAAATATTAATATGAGTTCATAGATACGTATCGCAGGGGAG
AACATTCCTCACTCCATTAATCTAACGTCTTGTGTGGTGGTTTGAAGACA
TGTCCAGCCACATTAATCAAATGTTTACAAGTGATGCGTTGTGACACGAA
AAGGAGAATTGATAAAACGTTAAAAAAAAAGCTTCAAACTACGTATAGCC
CGTGGCTTCGGCTCCAAGAGCACTGATCCCCCATATTCTCCACACCTCAT
ACTCTCGTCATGACAGCACTTGCTGCGGTTCGTGGATGACCTCGCCGACA
TCTCCGCCCTCGTGTAAGTACCGAAAAACCCGCTTCATGTCCAGACCTAA
ACAGACATGGATGTAGTACACTCCTATATCGGCACCTATAGGCTTATTCT
TCTTACCCCCTCCCTCCCTCAGCTTTGATCCCCGCACGAAGCAATACTCG
CCGCACTCCAAAGAGTGGGTCAAGAGCAAGATCTACGAGAATTTGAAGCA
GCAAGCCGGTGGGGGACGCTAGATGACGGAATGAAGGGAGGAAAGGAGGG
ACTGAGGGATTGTGAAGGATGGAGGAAGGGATGAGAATGAGCAGTGGATG
AGGGGCGTGAGGTCAGGCGCCACGTTGGTCAAGAGAGGGGGCATTAGATC
GAAGAAATAGAAAGACAAGAAGAAGTAACAAAAGATGAAGATGAATACGC
TATATGCGGGTATCTGTATCTACGAGAAGAAGAGGATTTGCCTTGCTCAA
AGGAGGCAAGACATAAGAGGTATCTCTTCTTTCTTTCGAGAGGAGGGAGA
CCAGAGGGAAGCTCAACGCTTCGTGTGTAAGCCCGCGTCCATGGCTCGCG
TTCTATCACTTTTCTTTCGATCAATTCTAACTGCTGCTGCTAATGTTGCT
GCTTCC
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Coding sequence (CDS) from alignment at scaffold_7:814249..815704-

>mRNA_3162 ID=mRNA_3162|Name=jgi.p|Nanoce1779_2|584772|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_7:814249..815704- (Nannochloropsis oceanica)
CTTTGATCCCCGCACGAAGCAATACTCGCCGCACTCCAAAGAGTGGGTCA
AGAGCAAGATCTACGAGAATTTGAAGCAGCAAGCCGGTGGGGGACGCTAG
CACTTGCTGCGGTTCGTGGATGACCTCGCCGACATCTCCGCCCTCGTAGG
TAGTGAAGATGTACGAGAAACAGCTCAAGCAACTAAACCCTACCATCCCG
CATATAACCTATGACATCTCGATGGCTTCTCGGCACACCATCCTCCTGGT
CCAGCCTACGCGTGTGGCGGCGTCCCGCACGTTCTTCGACTTCCCCACGG
TCTATGAGGCCATGGACGCTTTGATCCCCGCACGAAGCAATACTCGCCGC
ACTCCAAAGAGTGGGTCAAGAGCAAGATCTACGAGAATTTGAAGCAGCAA
GCCGGTGGGGGACGCTAGCACTTGCTGCGGTTCGTGGATGACCTCGCCGA
CATCTCCGCCCTCGTAGGTAGTGAAGATGTACGAGAAACAGCTCAAGCAA
CTAAACCCTACCATCCCGCATATAACCTATGACATCTCGATGGCTTCTCG
GCACACCATCCTCCTGGTCCAGCCTACGCGTGTGGCGGCGTCCCGCACGT
TCTTCGACTTCCCCACGGTCTATGAGGCCATGGACGCTTTGATCCCCGCA
CGAAGCAATACTCGCCGCACTCCAAAGAGTGGGTCAAGAGCAAGATCTAC
GAGAATTTGAAGCAGCAAGCCGGTGGGGGACGCTAGCACTTGCTGCGGTT
CGTGGATGACCTCGCCGACATCTCCGCCCTCGTAGGTAGTGAAGATGTAC
GAGAAACAGCTCAAGCAACTAAACCCTACCATCCCGCATATAACCTATGA
CATCTCGATGGCTTCTCGGCACACCATCCTCCTGGTCCAGCCTACGCGTG
TGGCGGCGTCCCGCACGTTCTTCGACTTCCCCACGGTCTATGAGGCCATG
GACGCTTTGATCCCCGCACGAAGCAATACTCGCCGCACTCCAAAGAGTGG
GTCAAGAGCAAGATCTACGAGAATTTGAAGCAGCAAGCCGGTGGGGGACG
CTAGCACTTGCTGCGGTTCGTGGATGACCTCGCCGACATCTCCGCCCTCG
TAGGTAGTGAAGATGTACGAGAAACAGCTCAAGCAACTAAACCCTACCAT
CCCGCATATAACCTATGACATCTCGATGGCTTCTCGGCACACCATCCTCC
TGGTCCAGCCTACGCGTGTGGCGGCGTCCCGCACGTTCTTCGACTTCCCC
ACGGTCTATGAGGCCATGGACG
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Synonyms
Publications