jgi.p|Nanoce1779_2|584770, mRNA_3161 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584770
Unique NamemRNA_3161
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length710
Alignment locationscaffold_7:812367..814273 +

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Properties
Property NameValue
TranscriptId584856
TrackFilteredModels2
ProteinId584770
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:812367..814273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584770gene_3161Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584770mRNA_3161-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3161CDS_3161Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3161 ID=mRNA_3161|Name=jgi.p|Nanoce1779_2|584770|organism=Nannochloropsis oceanica|type=mRNA|length=710bp
CAGTCACAGCCATGGTGCGCATGAGCGTGTTGGCCGATGCCCTCAAGACC
ATCTCCAACGCAGAGGACCGAGGAAAGAAGCAGGTGCTGGTCCGTCCCTC
ATCCAAGGTGACAGTCAAGTTCTTGCAAGTCATGCAGAAGAACGGCTACA
TCGGCGAGTTCGAGATCGTGGACGATCATCGAGGAGGGAAGATTGTGGTG
GACCTGATTGGACGAATCAACAAGGTCGGCGTGCTCTCTCCCCGTTTCGA
TCTCAAGTACGGCGAGTACGAAAACTGGGTCAACAACGTTTTGCCCTCCC
GTCAGTTCGGGCACATTGTCATGACGACAACGTTCGGCATCATGGATCAC
GAGGAGGCGCGTCGGCGGTTCACGGGAGGAAAGCTCTTGGGATTCTTCTA
TTAAGCAACAGCAGCAGCAGTAGCAGAAAGAAGAGCCACTGCCGCAGCAG
CCGTGATGTGATGGAGGAAGAGGAAGAGCATGAGGGCAGAAAAAGATGAA
GAAGACAACAATTTTATCAATCGAAATGGGAAACCTTTTTTTTAGGGGAG
TGAACTGTTTAAAATTCTCCCATTCTCCTTCCCTCCCTGCTGCCACCGTT
ACTTTCCGTTTCTCTGCGTCTTCTGGGTCCTCTGGACCATCTCCCCCCCC
TTCTTATCCGTGTTGCCTTTGCTGCCAGTTCTGATGGAAGCAGCAACATT
AGCAGCAGCA
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protein sequence of jgi.p|Nanoce1779_2|584770

>mRNA_3161-protein ID=mRNA_3161-protein|Name=jgi.p|Nanoce1779_2|584770|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEF
EIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFG
HIVMTTTFGIMDHEEARRRFTGGKLLGFFY*
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mRNA from alignment at scaffold_7:812367..814273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3161 ID=mRNA_3161|Name=jgi.p|Nanoce1779_2|584770|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp|location=Sequence derived from alignment at scaffold_7:812367..814273+ (Nannochloropsis oceanica)
CAGTCACAGCCATGGTGCGCATGAGCGTGTTGGCCGATGCCCTCAAGACC
ATCTCCAACGCAGAGGACCGAGGAAAGAAGCAGGTGCTGGTCCGTCCCTC
ATCCAAGGTGACAGTCAAGTTCTTGCAAGTCATGCAGAAGAACGGTGCGT
GGGAGTCGTGAAGGATGGAGGGGAGGGAGGGAGAGTTGGGTGAAGGCTGG
CTCAAGGATTGAGTAGACAAGGAAGTTAAATTGTATGTGTTCATGTGGAG
AGCATAGCCGTGTCGAAGCAGGTGAAGAGACATGAGCCGAGGCCTGCGAA
TCGGAGGAGGGAGGGAGAGGGGCTGGAGATCTAACCCCATCCGTAGAACC
ATCCGTGATTTGTTCTGACAAAGAGAAGGGAGGAAAACGGAGGCGTGTAC
TTTTATTTGGATTCGCAAGCTAACACTCTGTTCACAGAGCCCGGCCTTCT
CTTTTCAGCCGGCCGTGGCGATGACTGTCATCAATTTTTTCGCATTGCAA
GATCAAACCTGAGGGACAACACTCACCGCCGGGGATTGTTTCAGGAACTA
GGCGGCCTTATGTTTCCCTCACACTTATCACATCCACGTTACAATACATG
TGACGTGTGTCTCTTACCCTTTCTTTCATCTCATATTTTTCAACTGAACT
CATTCCCTCCCCTCCTCTCTCCATCCCGCCTGCCCCTTATCTTCAGGCTA
CATCGGCGAGTTCGAGATCGTGGACGATCATCGAGGAGGGAAGATTGTGG
TGGACCTGATTGGACGAATCAACAAGGTCGGCGTGCTCTCTCCCCGTTTC
GATCTCAAGTACGGCGAGTACGAAAACTGGGTCAACAACGTTTTGCCCTC
CCGTCAGGTATGTCTCCGTGTTTCTATCCCAAGGCCAGATCCGGAGATGG
GCGGGTTTTGAGTGGGATATGTTTTGTCTCTGATGGTGTCTTTGTGTCTG
ACGTGCGTCTGACTGATAGGGTCGTGTTATACCCTCCCGTCACGGAGATG
CCCAAGAATGCTCTTGATTTTGTGTGTGTTCTTCTTTTATAATGAAACTG
TGTGGATTCTATCTTTTTTTGCATTGTTTGGCTGTTTGGGGTTTGAGAGA
AGAGAGGGGAGATGAGGTGGGTGGAGCTCGTGTCGTCTTATTCTTTTTTT
GCCCACCTGGTTGTTAAGAGTTTATGCACACCTTACTTTCCTTTCTAATT
GGGCTGAGTGTGTCTGTGTGCTTGTAGTACATGGCTATATGTGTGTGTGT
GTGTCAGAATAAGCAACGAATGGAAGGACTTTGATGATGATCGTAAACGA
AAGATTTTCTGACACCTCTTGTAGGAGGCTGTTGCCACAACGGCAGTCGA
TGAACGCACTCACGTTTAAACACACCTGAATGAAGTCCACATTTCCTCTC
TATCTCTCGCCGTCTCTCCGCCCTTCTGTTTCCCTCTTCTAACCCTTTCC
TCCCTCCCTCCCTCCATCCTTCCCTCCTTCCCTCCTTCTCTCTCTGTTAC
AGTTCGGGCACATTGTCATGACGACAACGTTCGGCATCATGGATCACGAG
GAGGCGCGTCGGCGGTTCACGGGAGGAAAGCTCTTGGGATTCTTCTATTA
AGCAACAGCAGCAGCAGTAGCAGAAAGAAGAGCCACTGCCGCAGCAGCCG
TGATGTGATGGAGGAAGAGGAAGAGCATGAGGGCAGAAAAAGATGAAGAA
GACAACAATTTTATCAATCGAAATGGGAAACCTTTTTTTTAGGGGAGTGA
ACTGTTTAAAATTCTCCCATTCTCCTTCCCTCCCTGCTGCCACCGTTACT
TTCCGTTTCTCTGCGTCTTCTGGGTCCTCTGGACCATCTCCCCCCCCTTC
TTATCCGTGTTGCCTTTGCTGCCAGTTCTGATGGAAGCAGCAACATTAGC
AGCAGCA
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Coding sequence (CDS) from alignment at scaffold_7:812367..814273+

>mRNA_3161 ID=mRNA_3161|Name=jgi.p|Nanoce1779_2|584770|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_7:812367..814273+ (Nannochloropsis oceanica)
ATGGTGCGCATGAGCGTGTTGGCCGATGCCCTCAAGACCATCTCCAACGC
AGAGGACCGAGGAAAGAAGCAGGTGCTGGTCCGTCCCTCATCCAAGGTGA
CAGTCAAGTTCTTGCAAGTCATGCAGAAGAACGGCTACATCGGCGAGTTC
GAGATCGTGGACGATCATCGAGGAGGGAAGATTGTGGTGGACCTGATTGG
ACGAATCAACAAGGTCGGCGTGCTCTCTCCCCGTTTCGATCTCAAGTACG
GCGAGTACGAAAACTGGGTCAACAACGTTTTGCCCTCCCGTCAGTTCGGG
CACATTGTCATGACGACAACGTTCGGCATCATGGATCACGAGGAGGCGCG
TCGGCGGTTCACGGGAGGAAAGCTCTTGGGATTCTTCTATTAAATGGTGC
GCATGAGCGTGTTGGCCGATGCCCTCAAGACCATCTCCAACGCAGAGGAC
CGAGGAAAGAAGCAGGTGCTGGTCCGTCCCTCATCCAAGGTGACAGTCAA
GTTCTTGCAAGTCATGCAGAAGAACGGCTACATCGGCGAGTTCGAGATCG
TGGACGATCATCGAGGAGGGAAGATTGTGGTGGACCTGATTGGACGAATC
AACAAGGTCGGCGTGCTCTCTCCCCGTTTCGATCTCAAGTACGGCGAGTA
CGAAAACTGGGTCAACAACGTTTTGCCCTCCCGTCAGTTCGGGCACATTG
TCATGACGACAACGTTCGGCATCATGGATCACGAGGAGGCGCGTCGGCGG
TTCACGGGAGGAAAGCTCTTGGGATTCTTCTATTAAATGGTGCGCATGAG
CGTGTTGGCCGATGCCCTCAAGACCATCTCCAACGCAGAGGACCGAGGAA
AGAAGCAGGTGCTGGTCCGTCCCTCATCCAAGGTGACAGTCAAGTTCTTG
CAAGTCATGCAGAAGAACGGCTACATCGGCGAGTTCGAGATCGTGGACGA
TCATCGAGGAGGGAAGATTGTGGTGGACCTGATTGGACGAATCAACAAGG
TCGGCGTGCTCTCTCCCCGTTTCGATCTCAAGTACGGCGAGTACGAAAAC
TGGGTCAACAACGTTTTGCCCTCCCGTCAGTTCGGGCACATTGTCATGAC
GACAACGTTCGGCATCATGGATCACGAGGAGGCGCGTCGGCGGTTCACGG
GAGGAAAGCTCTTGGGATTCTTCTATTAA
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Synonyms
Publications