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Properties
Property Name | Value |
TranscriptId | 670028 |
Track | FilteredModels2 |
ProteinId | 669942 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_7 | supercontig | scaffold_7:808492..811310 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3160 ID=mRNA_3160|Name=jgi.p|Nanoce1779_2|669942|organism=Nannochloropsis oceanica|type=mRNA|length=2618bp CAAAAGCCACAAGCACGCACAGCGCCACAGGCACAACGTGGAGGTATTTC TTGCTGTCAAGCGTCGTCGGCGCACACAAGTTGCAGGTGGCCGGCCCCAG GTCCCCGCCTCTCGCTTGACATTAATTGAGTTGAAGGAAGCAGGAGGGGA GCAGAGGTGGTCGTGGAAAAGCCACGCCAAGCCATCATTATGGAGGCTTT CTCCAGAGGCTTCAACAGCGGGAGACAAGATGGAGGAGGCGGTTTGTTGG GCCCTTTGGCCCGAATGCTCCGGTTTTCCCTACGAATAACGGGCTTGCAC CTGCTAGGGCGCGCCTTACCTCTAGGGCTACTGCTTGCCTTGACGTGCGG CCTCCCCATGGCGTGGGCTTGGCGGAATTTTGTGACACCAAGCAATTGGT GGACAAAACGGGTGATTGTTGATACCGAATCGGGACCTGTGCAAGGCTTC ACCCAAGACAAGGTCAGCTTCTACCTGGGAATTCCATATGCAGCCCCGCC GGTAGGAGAACTCCGGTTTGCGGCTCCTCGAATGCTAGGCAGGAAATGGG ACAAACGTCAACCGTACGATGCAACCTACTTCCGCGCAGAGTGTATGCAA GGCAAATTGCATAACGCGGACCGTCCCAAGGTGCTCAGCGAAGACTGTCT GTTTCTCAACATATGGACGCCATCGACAGCAACTAGGAAGAAACCTGTCC CTGTCATGGTGTGGTTATACGGTGGTGCCTTCCAACAAGGCGGCTCATCG AAAGCTGAATACTACGGAGAAAACCTTGCGGCCAAGGGGGTGGTGATTGT GAGCTGTAACTATCGTTTGGGCGCGTTGGGTTTCATGGTGTCGGTGGATG ACGGTTTGTTTGGGAATTATGGCTTGCAGGACCAACGGTTTTGCATGGAG TGGGTTCAGAGGAATATAAGAGGGTTTGGGGGAGACCCGGATCAGGTGAC TTTGTTTGGGGAGTCAGCCGGAGCAATGTCGGTGGGCCAGCATCTGTTGA TGGAGGGGCAGGGGAGGTTGTTCCATCGGGTCATAATGCAGAGTAATCCG TTTTCGTACCACTACCGGAGTTTGACAGTGGCGAATTTCTTGGGGCAGGC CGTGAAGAATGGTGTGGACTGCCATGACCTGAAGTGTTTGCAGGAAGAGC CCGTGGAGGAGCTGTTGGAAGTGCAGGACAGCATCCATGGTCTTCCCCGG AGTGTGGGAGACTTTTTCACCTGGGGCCCGGTGGTAAATGAAGGGCCGTG GTGGCGAGCGGTGGAGTTGAGTGGTGGGAGGCCGAGGGAGGCGGTTCCGA TAACGGTGCGGCAGCCGTTGAAGGCGTTGGAGGCGAGGGATTTTGTAAAC AAAGTGCCGGTGATATTAGGTAGTTGTAAGAATGAGGGGCAAATGTTTGT TTATAATATTTTCCCGTTTCCCATGCCCAAATATTTGTATTGGGGTTTCG TATTTGTTTTATTTCGGGAGAGTGCCCCGAAGATTATTCGACACTATGCA GAGGTGGTGGAGAAGGAGGTGGCGAGGCAAGGGTCGAAGCGAATAGATTA CCGTCCTGTTTTGTCCATTATTTTGAACGATTACATGTTTCGTTGCCCGA CGTGGAGGGCGGCTCATTTACTGCAGGAGAAGAGCGTGGGGGCGGCGGTG GCGCCTGTATATGTCTTTCAATTCTCGCATCCGACGCGGGTGCCGGGATA CCCGGAGTGTCACGGTCTGAGTTGCCACACATCGGAATTACCCTTCGTGT TTAACAACTTGGACGTGATTCACAAGCAGTACGCAATGGGGTACGAGGAC CGGAACGCTTCGACGGTCAAGGATTTGGTGTCGAATGTCCTCTGGGGGCT CTTTCTCAAGGCGGACACGGACGAAAAACTCGCGTCGATGATGGCGGATC ATTGGGCGGCGTTCGGCAGGACGGGCAATCCGAACTTCAAGGGCGCGCCC GTGCATTGGCGGCAGTGGAAGGGAAGAAGACGGTATCATTTGCAGCAGAA TCCGGTGGACAATGATGAGGAGTGGAGGGAGAGAGTGACGGAGGATGAGG GGGTAGATTTGAAGGGGGGATCGGCGGGCGCGGCGAGGAGGGGCTGGAAG GCGGCGACGGGGGGGGGAGGGAGAAAAGCAGGAGGAGCAGAAAGAGGGAG GAAGGAGGGGGGAGCATCCACCACGGTGATAGAGCCACATTACCTGGAAT TAAAGTGGAAACCGGAGTTGCACTTGGCGACCCGGGACTGCACGTGTGAT TTTTGGGATAACTTTAACTACAAATGGTAATTTACCTGACTAGCGAGCAT TTTGAAGGAGGGAGGGAAGGAGAAAAGCATGCAGTCACCTACCTCTCCTG AACTGGAAAAGGACATTGACGAGCAAGTGAGAAGTGAATCACTAAGGGAG GAAGCACGATATCAGCGCTTGCGTCTAGTAGTTCTGATTAAAAACCTGAA TACAGAAAGGTAGAAAGCGAGACAGAAACTAGGTGACAATTATGACAGCA TTTGAAATGCATAGACGTAACCGTGGAAGAAGCGAGAGAAGGATGATAAT AGATCAAACAGTCAAAACAAAAACAGGATAGAAAAAAGTCATGTACAAAG AAAAAATAATCTCTAAAC back to topprotein sequence of jgi.p|Nanoce1779_2|669942 >mRNA_3160-protein ID=mRNA_3160-protein|Name=jgi.p|Nanoce1779_2|669942|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp MEAFSRGFNSGRQDGGGGLLGPLARMLRFSLRITGLHLLGRALPLGLLLA LTCGLPMAWAWRNFVTPSNWWTKRVIVDTESGPVQGFTQDKVSFYLGIPY AAPPVGELRFAAPRMLGRKWDKRQPYDATYFRAECMQGKLHNADRPKVLS EDCLFLNIWTPSTATRKKPVPVMVWLYGGAFQQGGSSKAEYYGENLAAKG VVIVSCNYRLGALGFMVSVDDGLFGNYGLQDQRFCMEWVQRNIRGFGGDP DQVTLFGESAGAMSVGQHLLMEGQGRLFHRVIMQSNPFSYHYRSLTVANF LGQAVKNGVDCHDLKCLQEEPVEELLEVQDSIHGLPRSVGDFFTWGPVVN EGPWWRAVELSGGRPREAVPITVRQPLKALEARDFVNKVPVILGSCKNEG QMFVYNIFPFPMPKYLYWGFVFVLFRESAPKIIRHYAEVVEKEVARQGSK RIDYRPVLSIILNDYMFRCPTWRAAHLLQEKSVGAAVAPVYVFQFSHPTR VPGYPECHGLSCHTSELPFVFNNLDVIHKQYAMGYEDRNASTVKDLVSNV LWGLFLKADTDEKLASMMADHWAAFGRTGNPNFKGAPVHWRQWKGRRRYH LQQNPVDNDEEWRERVTEDEGVDLKGGSAGAARRGWKAATGGGGRKAGGA ERGRKEGGASTTVIEPHYLELKWKPELHLATRDCTCDFWDNFNYKW* back to topmRNA from alignment at scaffold_7:808492..811310+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3160 ID=mRNA_3160|Name=jgi.p|Nanoce1779_2|669942|organism=Nannochloropsis oceanica|type=mRNA|length=2819bp|location=Sequence derived from alignment at scaffold_7:808492..811310+ (Nannochloropsis oceanica) CAAAAGCCACAAGCACGCACAGCGCCACAGGCACAACGTGGAGGTATTTC
TTGCTGTCAAGCGTCGTCGGCGCACACAAGTTGCAGGTGGCCGGCCCCAG
GTCCCCGCCTCTCGCTTGACATTAATTGAGTTGAAGGAAGCAGGAGGGGA
GCAGAGGTGGTCGTGGAAAAGCCACGCCAAGCCATCATTATGGAGGCTTT
CTCCAGAGGCTTCAACAGCGGGAGACAAGATGGAGGAGGCGGTTTGTTGG
GCCCTTTGGCCCGAATGCTCCGGTTTTCCCTACGAATAACGGGCTTGCAC
CTGCTAGGGCGCGCCTTACCTCTAGGGCTACTGCTTGCCTTGACGTGCGG
CCTCCCCATGGCGTGGGCTTGGCGGAATTTTGTGACACCAAGCAATTGGT
GGACAAAACGGGTGATTGTTGATACCGAATCGGGACCTGTGCAAGGCTTC
ACCCAAGACAAGGTCAGCTTCTACCTGGGAATTCCATATGCAGCCCCGCC
GGTAGGAGAACTCCGGTTTGCGGCTCCTCGAATGCTAGGCAGGAAATGGG
ACAAACGTCAACCGTACGATGCAACCTACTTCCGCGCAGAGTGTATGCAA
GGCAAATTGCATAACGCGGACCGTCCCAAGGTGCTCAGCGAAGACTGTCT
GTTTCTCAACATATGGACGCCATCGACAGCAACTAGGAAGAAACCTGTCC
CTGTCATGGTGTGGTTATACGGTGGTGCCTTCCAACAAGGCGGCTCATCG
AAAGCTGAATACTACGGAGAAAACCTTGCGGCCAAGGGGGTGGTGATTGT
GAGCTGTAACTATCGTTTGGGCGCGTTGGGTTTCATGGTGTCGGTGGATG
ACGGTTTGTTTGGGAATTATGGCTTGCAGGACCAACGGTTTTGCATGGAG
TGGGTTCAGAGGAATATAAGAGGGTTTGGGGGAGACCCGGATCAGGTGAC
TTTGTTTGGGGAGTCAGCCGGAGCAATGTCGGTGGGCCAGCATCTGTTGA
TGGAGGGGCAGGGGAGGTTGTTCCATCGGGTCATAATGCAGAGTAATCCG
TTTTCGTACCACTACCGGAGTTTGACAGTGGCGAATTTCTTGGGGCAGGC
CGTGAAGAATGGTGTGGACTGCCATGACCTGAAGTGTTTGCAGGAAGAGC
CCGTGGAGGAGCTGTTGGAAGTGCAGGACAGCATCCATGGTCTTCCCCGG
AGTGTGGGAGACTTTTTCACCTGGGGCCCGGTGGTAAATGAAGGGCCGTG
GTGGCGAGCGGTGGAGTTGAGTGGTGGGAGGCCGAGGGAGGCGGTTCCGA
TAACGGTGCGGCAGCCGTTGAAGGCGTTGGAGGCGAGGGATTTTGTAAAC
AAAGTGCCGGTGATATTAGGTAGTTGTAAGAATGAGGGGCAAATGTTTGT
TTATAATATTTTCCCGTTTCCCATGCCCAAATATTTGTATTGGGGTTTCG
TATTTGTTTTATTTCGGGAGAGTGCCCCGAAGATTATTCGACACTATGCA
GAGGTGGTGGAGAAGGAGGTGGCGAGGCAAGGGTCGAAGCGAATAGATTA
CCGTCCTGTTTTGTCCATTATTTTGAACGATTACATGTTTCGTTGCCCGA
CGTGGAGGGCGGCTCATTTACTGCAGGAGAAGAGCGTGGGGGCGGCGGTG
GCGCCTGTATATGTCTTTCAATTCTCGCATCCGACGCGGGTGCCGGGATA
CCCGGAGTGTCACGGTCTGAGTTGCCACACATCGGAATTACCCTTCGTGT
TTAACAACTTGGACGTGATTCACAAGCAGTACGCAATGGGGTACGAGGAC
CGGAACGCTTCGACGGTCAAGGATTTGGTGTCGAATGTCCTCTGGGGGCT
CTTTCTCAAGGCGGACACGGACGAAAAACTCGCGTCGATGATGGCGGATC
ATTGGGCGGCGTTCGGCAGGACGGGCAATCCGAACTTCAAGGGCGCGCCC
GTGCATTGGCGGCAGTGGAAGGGAAGAAGACGGTATCATTTGCAGCAGAA
TCCGGTGGACAATGATGAGGAGTGGAGGGAGAGAGTGACGGAGGATGAGG
GGGTAGATTTGAAGGGGGGATCGGCGGGCGCGGCGAGGAGGGGCTGGAAG
GCGGCGACGGGGGGGGGAGGGAGAAAAGCAGGAGGAGCAGAAAGAGGGAG
GAAGGAGGGGGGAGCATCCACCACGGTGATAGAGCCACATTACCTGGAAT
TAAAGTGGAAACCGGAGTTGCACTTGGCGACCCGGGACTGCACGTGTGAT
TTTTGGGATAACTTTAACTGTACGTAGAATGGTTGATTGATTTGATATTG
AGGTTGGGGGGTTGGATGGACGTATTTGGCAGGGGTGCGGGTGTGCGGAT
GAGGGAGAACTAGAGATCCCTTCATCTTGATATTTGCGACGGGATTTGTT
CAAGATACAGGTTGCTCACTTCCTTCCCTCCTTTTCCCCCCTCTCTCCCT
CCCTCCACACCCACCCTCAGACAAATGGTAATTTACCTGACTAGCGAGCA
TTTTGAAGGAGGGAGGGAAGGAGAAAAGCATGCAGTCACCTACCTCTCCT
GAACTGGAAAAGGACATTGACGAGCAAGTGAGAAGTGAATCACTAAGGGA
GGAAGCACGATATCAGCGCTTGCGTCTAGTAGTTCTGATTAAAAACCTGA
ATACAGAAAGGTAGAAAGCGAGACAGAAACTAGGTGACAATTATGACAGC
ATTTGAAATGCATAGACGTAACCGTGGAAGAAGCGAGAGAAGGATGATAA
TAGATCAAACAGTCAAAACAAAAACAGGATAGAAAAAAGTCATGTACAAA
GAAAAAATAATCTCTAAAC back to topCoding sequence (CDS) from alignment at scaffold_7:808492..811310+ >mRNA_3160 ID=mRNA_3160|Name=jgi.p|Nanoce1779_2|669942|organism=Nannochloropsis oceanica|type=CDS|length=4182bp|location=Sequence derived from alignment at scaffold_7:808492..811310+ (Nannochloropsis oceanica) ATGGAGGCTTTCTCCAGAGGCTTCAACAGCGGGAGACAAGATGGAGGAGG CGGTTTGTTGGGCCCTTTGGCCCGAATGCTCCGGTTTTCCCTACGAATAA CGGGCTTGCACCTGCTAGGGCGCGCCTTACCTCTAGGGCTACTGCTTGCC TTGACGTGCGGCCTCCCCATGGCGTGGGCTTGGCGGAATTTTGTGACACC AAGCAATTGGTGGACAAAACGGGTGATTGTTGATACCGAATCGGGACCTG TGCAAGGCTTCACCCAAGACAAGGTCAGCTTCTACCTGGGAATTCCATAT GCAGCCCCGCCGGTAGGAGAACTCCGGTTTGCGGCTCCTCGAATGCTAGG CAGGAAATGGGACAAACGTCAACCGTACGATGCAACCTACTTCCGCGCAG AGTGTATGCAAGGCAAATTGCATAACGCGGACCGTCCCAAGGTGCTCAGC GAAGACTGTCTGTTTCTCAACATATGGACGCCATCGACAGCAACTAGGAA GAAACCTGTCCCTGTCATGGTGTGGTTATACGGTGGTGCCTTCCAACAAG GCGGCTCATCGAAAGCTGAATACTACGGAGAAAACCTTGCGGCCAAGGGG GTGGTGATTGTGAGCTGTAACTATCGTTTGGGCGCGTTGGGTTTCATGGT GTCGGTGGATGACGGTTTGTTTGGGAATTATGGCTTGCAGGACCAACGGT TTTGCATGGAGTGGGTTCAGAGGAATATAAGAGGGTTTGGGGGAGACCCG GATCAGGTGACTTTGTTTGGGGAGTCAGCCGGAGCAATGTCGGTGGGCCA GCATCTGTTGATGGAGGGGCAGGGGAGGTTGTTCCATCGGGTCATAATGC AGAGTAATCCGTTTTCGTACCACTACCGGAGTTTGACAGTGGCGAATTTC TTGGGGCAGGCCGTGAAGAATGGTGTGGACTGCCATGACCTGAAGTGTTT GCAGGAAGAGCCCGTGGAGGAGCTGTTGGAAGTGCAGGACAGCATCCATG GTCTTCCCCGGAGTGTGGGAGACTTTTTCACCTGGGGCCCGGTGGTAAAT GAAGGGCCGTGGTGGCGAGCGGTGGAGTTGAGTGGTGGGAGGCCGAGGGA GGCGGTTCCGATAACGGTGCGGCAGCCGTTGAAGGCGTTGGAGGCGAGGG ATTTTGTAAACAAAGTGCCGGTGATATTAGGTAGTTGTAAGAATGAGGGG CAAATGTTTGTTTATAATATTTTCCCGTTTCCCATGCCCAAATATTTGTA TTGGGGTTTCGTATTTGTTTTATTTCGGGAGAGTGCCCCGAAGATTATTC GACACTATGCAGAGGTGGTGGAGAAGGAGGTGGCGAGGCAAGGGTCGAAG CGAATAGATTACCGTCCTGTTTTGTCCATTATTTTGAACGATTACATGTT TCGTTGCCCGACGTGGAGGGCGGCTCATTTACTGCAGGAGAAGAGCGTGG GGGCGGCGGTGGCGCCTGTATATGTCTTTCAATTCTCGCATCCGACGCGG GTGCCGGGATACCCGGAGTGTCACGGTCTGAGTTGCCACACATCGGAATT ACCCTTCGTGTTTAACAACTTGGACGTGATTCACAAGCAGTACGCAATGG GGTACGAGGACCGGAACGCTTCGACGGTCAAGGATTTGGTGTCGAATGTC CTCTGGGGGCTCTTTCTCAAGGCGGACACGGACGAAAAACTCGCGTCGAT GATGGCGGATCATTGGGCGGCGTTCGGCAGGACGGGCAATCCGAACTTCA AGGGCGCGCCCGTGCATTGGCGGCAGTGGAAGGGAAGAAGACGGTATCAT TTGCAGCAGAATCCGGTGGACAATGATGAGGAGTGGAGGGAGAGAGTGAC GGAGGATGAGGGGGTAGATTTGAAGGGGGGATCGGCGGGCGCGGCGAGGA GGGGCTGGAAGGCGGCGACGGGGGGGGGAGGGAGAAAAGCAGGAGGAGCA GAAAGAGGGAGGAAGGAGGGGGGAGCATCCACCACGGTGATAGAGCCACA TTACCTGGAATTAAAGTGGAAACCGGAGTTGCACTTGGCGACCCGGGACT GCACGTGTGATTTTTGGGATAACTTTAACTACAAATGGTAAATGGAGGCT TTCTCCAGAGGCTTCAACAGCGGGAGACAAGATGGAGGAGGCGGTTTGTT GGGCCCTTTGGCCCGAATGCTCCGGTTTTCCCTACGAATAACGGGCTTGC ACCTGCTAGGGCGCGCCTTACCTCTAGGGCTACTGCTTGCCTTGACGTGC GGCCTCCCCATGGCGTGGGCTTGGCGGAATTTTGTGACACCAAGCAATTG GTGGACAAAACGGGTGATTGTTGATACCGAATCGGGACCTGTGCAAGGCT TCACCCAAGACAAGGTCAGCTTCTACCTGGGAATTCCATATGCAGCCCCG CCGGTAGGAGAACTCCGGTTTGCGGCTCCTCGAATGCTAGGCAGGAAATG GGACAAACGTCAACCGTACGATGCAACCTACTTCCGCGCAGAGTGTATGC AAGGCAAATTGCATAACGCGGACCGTCCCAAGGTGCTCAGCGAAGACTGT CTGTTTCTCAACATATGGACGCCATCGACAGCAACTAGGAAGAAACCTGT CCCTGTCATGGTGTGGTTATACGGTGGTGCCTTCCAACAAGGCGGCTCAT CGAAAGCTGAATACTACGGAGAAAACCTTGCGGCCAAGGGGGTGGTGATT GTGAGCTGTAACTATCGTTTGGGCGCGTTGGGTTTCATGGTGTCGGTGGA TGACGGTTTGTTTGGGAATTATGGCTTGCAGGACCAACGGTTTTGCATGG AGTGGGTTCAGAGGAATATAAGAGGGTTTGGGGGAGACCCGGATCAGGTG ACTTTGTTTGGGGAGTCAGCCGGAGCAATGTCGGTGGGCCAGCATCTGTT GATGGAGGGGCAGGGGAGGTTGTTCCATCGGGTCATAATGCAGAGTAATC CGTTTTCGTACCACTACCGGAGTTTGACAGTGGCGAATTTCTTGGGGCAG GCCGTGAAGAATGGTGTGGACTGCCATGACCTGAAGTGTTTGCAGGAAGA GCCCGTGGAGGAGCTGTTGGAAGTGCAGGACAGCATCCATGGTCTTCCCC GGAGTGTGGGAGACTTTTTCACCTGGGGCCCGGTGGTAAATGAAGGGCCG TGGTGGCGAGCGGTGGAGTTGAGTGGTGGGAGGCCGAGGGAGGCGGTTCC GATAACGGTGCGGCAGCCGTTGAAGGCGTTGGAGGCGAGGGATTTTGTAA ACAAAGTGCCGGTGATATTAGGTAGTTGTAAGAATGAGGGGCAAATGTTT GTTTATAATATTTTCCCGTTTCCCATGCCCAAATATTTGTATTGGGGTTT CGTATTTGTTTTATTTCGGGAGAGTGCCCCGAAGATTATTCGACACTATG CAGAGGTGGTGGAGAAGGAGGTGGCGAGGCAAGGGTCGAAGCGAATAGAT TACCGTCCTGTTTTGTCCATTATTTTGAACGATTACATGTTTCGTTGCCC GACGTGGAGGGCGGCTCATTTACTGCAGGAGAAGAGCGTGGGGGCGGCGG TGGCGCCTGTATATGTCTTTCAATTCTCGCATCCGACGCGGGTGCCGGGA TACCCGGAGTGTCACGGTCTGAGTTGCCACACATCGGAATTACCCTTCGT GTTTAACAACTTGGACGTGATTCACAAGCAGTACGCAATGGGGTACGAGG ACCGGAACGCTTCGACGGTCAAGGATTTGGTGTCGAATGTCCTCTGGGGG CTCTTTCTCAAGGCGGACACGGACGAAAAACTCGCGTCGATGATGGCGGA TCATTGGGCGGCGTTCGGCAGGACGGGCAATCCGAACTTCAAGGGCGCGC CCGTGCATTGGCGGCAGTGGAAGGGAAGAAGACGGTATCATTTGCAGCAG AATCCGGTGGACAATGATGAGGAGTGGAGGGAGAGAGTGACGGAGGATGA GGGGGTAGATTTGAAGGGGGGATCGGCGGGCGCGGCGAGGAGGGGCTGGA AGGCGGCGACGGGGGGGGGAGGGAGAAAAGCAGGAGGAGCAGAAAGAGGG AGGAAGGAGGGGGGAGCATCCACCACGGTGATAGAGCCACATTACCTGGA ATTAAAGTGGAAACCGGAGTTGCACTTGGCGACCCGGGACTGCACGTGTG ATTTTTGGGATAACTTTAACTACAAATGGTAA back to top
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