jgi.p|Nanoce1779_2|584757, mRNA_3157 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584757
Unique NamemRNA_3157
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1045
Alignment locationscaffold_7:802597..803641 -

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Properties
Property NameValue
TranscriptId584843
TrackFilteredModels2
ProteinId584757
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:802597..803641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584757gene_3157Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584757mRNA_3157-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3157CDS_3157Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3157 ID=mRNA_3157|Name=jgi.p|Nanoce1779_2|584757|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp
ACAGGGGCCAACGATGGCACGACGCCAGCATCATCGTAGGCGCCTGGTGC
CTCTTCCACCTCTTGTCCTCGCCGCGATCGTCCTCGTCGTAGCAATCCTG
CACTCCGCCCAAGCAGCAACCTATTCTCGCAACCCTCTAGCCAGAGCCCT
CCACATGACAGGTAAGGCGCTGCAGCGACGCGTTCAGGCAGCTAAGGTAG
ACAAGCGCCAGCAGATGCGTAAGCACTGGCAGCATGCCGCTCAGGACGAG
GACGAGGATCTGGTAACGAGCATGGAGGTGGATGCGGAGGAGGCAGCAAA
TGGACCGCGAGGAAGGGCGCGCAGCAACCGGCATCGGATCGTTCGCCAAC
TCAAACAAACAGACGATGAGACAGAGGATGAAGATGAGGATGGAGAAAAC
GACTCCGGTGCGACGCCTGCTGCGCCCCAACCTGAGCCCATGAAGATTAC
GCTCGACCTGAATTTCAAGGAAGTGGTAGGAGGGAATGGAGACATTACCA
CTGCTGCCCTCGACGGGAAGCCACCTGTCGAAGTTTCTGCTTTCCAACAG
CATCGTACGCTTATTCTTGGTGTGGCATTTTGTGGGGGGATCGTTCTCTT
GGCGCTGGCATTTACCTTTCTTCGGCAAGCAAAGCTATGGCGACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGAGAGGTTCTGGGGCTACG
CTTGAGACATCGCCCCATAAAAAACGGCCCATGGAATTGAATTCGGTGAC
GGCGGCAGGAGGGGTAGAAAATCCCAGTAGTCCTTCCACAGGACGAGAAG
GGAGGGGGGAGAAGTCGATGTCAGGGCGTTTGGCGGGAGAACGAGCAGCA
GGCAACAGCAGCACCAATAGGAGTAAAATCATGGTGCGTGAAGAGAGTCG
GATCGATAGTAGCCGGGCGCCGAATACGGGCCGCGGAGATTTTTTCCAGT
TGAAGGAAATCGATTTGGGGGTGCAGTCGCCCGGCAGGGGAGGGCCGGGG
TCGAAGGTATTTTCGCCTCGTGGTTAAGAGGGCAAGAAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|584757

>mRNA_3157-protein ID=mRNA_3157-protein|Name=jgi.p|Nanoce1779_2|584757|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MARRQHHRRRLVPLPPLVLAAIVLVVAILHSAQAATYSRNPLARALHMTG
KALQRRVQAAKVDKRQQMRKHWQHAAQDEDEDLVTSMEVDAEEAANGPRG
RARSNRHRIVRQLKQTDDETEDEDEDGENDSGATPAAPQPEPMKITLDLN
FKEVVGGNGDITTAALDGKPPVEVSAFQQHRTLILGVAFCGGIVLLALAF
TFLRQAKLWRQQQQQQQQQQQQLRGSGATLETSPHKKRPMELNSVTAAGG
VENPSSPSTGREGRGEKSMSGRLAGERAAGNSSTNRSKIMVREESRIDSS
RAPNTGRGDFFQLKEIDLGVQSPGRGGPGSKVFSPRG*
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mRNA from alignment at scaffold_7:802597..803641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3157 ID=mRNA_3157|Name=jgi.p|Nanoce1779_2|584757|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp|location=Sequence derived from alignment at scaffold_7:802597..803641- (Nannochloropsis oceanica)
ACAGGGGCCAACGATGGCACGACGCCAGCATCATCGTAGGCGCCTGGTGC
CTCTTCCACCTCTTGTCCTCGCCGCGATCGTCCTCGTCGTAGCAATCCTG
CACTCCGCCCAAGCAGCAACCTATTCTCGCAACCCTCTAGCCAGAGCCCT
CCACATGACAGGTAAGGCGCTGCAGCGACGCGTTCAGGCAGCTAAGGTAG
ACAAGCGCCAGCAGATGCGTAAGCACTGGCAGCATGCCGCTCAGGACGAG
GACGAGGATCTGGTAACGAGCATGGAGGTGGATGCGGAGGAGGCAGCAAA
TGGACCGCGAGGAAGGGCGCGCAGCAACCGGCATCGGATCGTTCGCCAAC
TCAAACAAACAGACGATGAGACAGAGGATGAAGATGAGGATGGAGAAAAC
GACTCCGGTGCGACGCCTGCTGCGCCCCAACCTGAGCCCATGAAGATTAC
GCTCGACCTGAATTTCAAGGAAGTGGTAGGAGGGAATGGAGACATTACCA
CTGCTGCCCTCGACGGGAAGCCACCTGTCGAAGTTTCTGCTTTCCAACAG
CATCGTACGCTTATTCTTGGTGTGGCATTTTGTGGGGGGATCGTTCTCTT
GGCGCTGGCATTTACCTTTCTTCGGCAAGCAAAGCTATGGCGACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGAGAGGTTCTGGGGCTACG
CTTGAGACATCGCCCCATAAAAAACGGCCCATGGAATTGAATTCGGTGAC
GGCGGCAGGAGGGGTAGAAAATCCCAGTAGTCCTTCCACAGGACGAGAAG
GGAGGGGGGAGAAGTCGATGTCAGGGCGTTTGGCGGGAGAACGAGCAGCA
GGCAACAGCAGCACCAATAGGAGTAAAATCATGGTGCGTGAAGAGAGTCG
GATCGATAGTAGCCGGGCGCCGAATACGGGCCGCGGAGATTTTTTCCAGT
TGAAGGAAATCGATTTGGGGGTGCAGTCGCCCGGCAGGGGAGGGCCGGGG
TCGAAGGTATTTTCGCCTCGTGGTTAAGAGGGCAAGAAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_7:802597..803641-

>mRNA_3157 ID=mRNA_3157|Name=jgi.p|Nanoce1779_2|584757|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_7:802597..803641- (Nannochloropsis oceanica)
ATGGCACGACGCCAGCATCATCGTAGGCGCCTGGTGCCTCTTCCACCTCT
TGTCCTCGCCGCGATCGTCCTCGTCGTAGCAATCCTGCACTCCGCCCAAG
CAGCAACCTATTCTCGCAACCCTCTAGCCAGAGCCCTCCACATGACAGGT
AAGGCGCTGCAGCGACGCGTTCAGGCAGCTAAGGTAGACAAGCGCCAGCA
GATGCGTAAGCACTGGCAGCATGCCGCTCAGGACGAGGACGAGGATCTGG
TAACGAGCATGGAGGTGGATGCGGAGGAGGCAGCAAATGGACCGCGAGGA
AGGGCGCGCAGCAACCGGCATCGGATCGTTCGCCAACTCAAACAAACAGA
CGATGAGACAGAGGATGAAGATGAGGATGGAGAAAACGACTCCGGTGCGA
CGCCTGCTGCGCCCCAACCTGAGCCCATGAAGATTACGCTCGACCTGAAT
TTCAAGGAAGTGGTAGGAGGGAATGGAGACATTACCACTGCTGCCCTCGA
CGGGAAGCCACCTGTCGAAGTTTCTGCTTTCCAACAGCATCGTACGCTTA
TTCTTGGTGTGGCATTTTGTGGGGGGATCGTTCTCTTGGCGCTGGCATTT
ACCTTTCTTCGGCAAGCAAAGCTATGGCGACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTTGAGAGGTTCTGGGGCTACGCTTGAGACATCGC
CCCATAAAAAACGGCCCATGGAATTGAATTCGGTGACGGCGGCAGGAGGG
GTAGAAAATCCCAGTAGTCCTTCCACAGGACGAGAAGGGAGGGGGGAGAA
GTCGATGTCAGGGCGTTTGGCGGGAGAACGAGCAGCAGGCAACAGCAGCA
CCAATAGGAGTAAAATCATGGTGCGTGAAGAGAGTCGGATCGATAGTAGC
CGGGCGCCGAATACGGGCCGCGGAGATTTTTTCCAGTTGAAGGAAATCGA
TTTGGGGGTGCAGTCGCCCGGCAGGGGAGGGCCGGGGTCGAAGGTATTTT
CGCCTCGTGGTTAA
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Synonyms
Publications