jgi.p|Nanoce1779_2|584750, mRNA_3155 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584750
Unique NamemRNA_3155
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1615
Alignment locationscaffold_7:798909..800754 -

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Properties
Property NameValue
TranscriptId584836
TrackFilteredModels2
ProteinId584750
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:798909..800754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584750gene_3155Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584750mRNA_3155-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3155CDS_3155Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3155 ID=mRNA_3155|Name=jgi.p|Nanoce1779_2|584750|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp
ACAGGAAACCAGCCCCCGCTTCTTCTGTGCCTACTGCCTTAACATCTGCT
TTGAGAAGGAACGCGGCCACTTTTCTCCACCACCAACCGCGCACCCTCGT
TTCCACGCTTCACCCTCACCTCCTTCGATCATGGCGTTGGACGTGAAGGA
GAAGAACTTGATCAAGTTCATTTTAAAGCGCCTCGTGCCGATTCTAATTG
TCTCTTTTTCCTTTGCCTCCTACATGGAGCTGTGGGACCAACCCGTCCGA
CTGCTGGGTTTTTCCCTGTTGGCTGTCTGGCTGGTGAAATTCCTGAACCT
GGCCCTGTATTTTGCGCGTGTCAAGCTTTTCCCTCGCGACCCTTTGTCGT
ACGGAAAGTGGGCCATTGTGACAGGTGCCACAGCAGGCATTGGTGAAGCT
TTTGCCTACGAGCTGGCTTCGCGTGGTATGAATGTTATAATTATCTCACG
TTCCATGGAAAAGCTGGAAGAGGTAAAGAAGGGCATTTTGAAAGAAACTC
CTGGGGTGGAGGTTCGGTGCATTGCCTATGACTACACGGATCGAGAAGGT
GCTGATGCCTTCTTTGCAACGTTGTCTGAGACGTGCAAGAGTTTGGTGGG
TGGTCTGGGCATTTTGGTGAATAACGTGGGGATGGTCAATGCGCTCCCGG
AATACATGCACCAATTGGACGCGCGCACCACCTATGGCATCCTTCAAGTC
AATGTCGAAGGGACCGTGCGCACGACCCGGGCAGTCGCCCCTTTCCTGAT
CGATCAGCGCAAGGGTGCTATAATCAATGTCTCATCAGGTTCGGGGAATC
ACCCGACCCCAATGATCAGCTGTTATGCGTCCACAAAGGCGTTTATCACC
CAATTTTCCCAGTGCTTGTCACATGAACTGAGAGAGTTTGGGGTGGATGT
GTTGGTGGTCACCCCTTACTATGTGATCTCCAATCAATTTCGACGGAAGA
AGGCGACCTACATCGCACCTACGGCCCAGCGGATGGTCCAAGACACTCTG
CCCATCTTGGGTTACTGCGACGTGGCTTACCCTTACTGGTTTCACGCCCT
ATGCGGGTTCTTTGTGGGGTTGTATTGGGATGTGGGAGGGTCGGTGATGG
CTGCCATGCGGAGGAATCGTGCTCGGATTATGGAGGCGGCGGCGGCCAAG
AAGGGAAAGGGGGAGTAAGATATGGAGTGGAAATCAGATAGAGATATAAC
TAGGGAGGGGTCACCGGCAGTAGCGGCGGGTGTATAAAAGGCAACGGGGA
AAGGGAGAAAAGGAAAAAAGAGAAGGATGAAAAAAGGATGGTTATGATGA
AAGCAGGGAGACAGAGATCAAGAGAGTGAGCAGACAAAGAGTAGCAAGCG
ATAGCTAGGACGATGACGATGATGATGACGGCGGACAGTCGACGGACGAG
CAGGACTGCCGCCAGCAGAGTCGCCTGTGCTCTATTTTGTTTGTGTATGT
CAGAAAGATTGTCGGATTGGGGTGGGGATAGTGTCGTGCATGTCCGTCTC
TTCTCCTCCGTCTTGTTTGACCTTACATGTGTACCATCAAAGCAGGAACA
TCGTTAGCAGCAAAATGAAAGAATAAAACGAAGGGGGAAAAGAAGTAAGG
AAGAAATTATGGCAA
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protein sequence of jgi.p|Nanoce1779_2|584750

>mRNA_3155-protein ID=mRNA_3155-protein|Name=jgi.p|Nanoce1779_2|584750|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MALDVKEKNLIKFILKRLVPILIVSFSFASYMELWDQPVRLLGFSLLAVW
LVKFLNLALYFARVKLFPRDPLSYGKWAIVTGATAGIGEAFAYELASRGM
NVIIISRSMEKLEEVKKGILKETPGVEVRCIAYDYTDREGADAFFATLSE
TCKSLVGGLGILVNNVGMVNALPEYMHQLDARTTYGILQVNVEGTVRTTR
AVAPFLIDQRKGAIINVSSGSGNHPTPMISCYASTKAFITQFSQCLSHEL
REFGVDVLVVTPYYVISNQFRRKKATYIAPTAQRMVQDTLPILGYCDVAY
PYWFHALCGFFVGLYWDVGGSVMAAMRRNRARIMEAAAAKKGKGE*
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mRNA from alignment at scaffold_7:798909..800754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3155 ID=mRNA_3155|Name=jgi.p|Nanoce1779_2|584750|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at scaffold_7:798909..800754- (Nannochloropsis oceanica)
ACAGGAAACCAGCCCCCGCTTCTTCTGTGCCTACTGCCTTAACATCTGCT
TTGAGAAGGAACGCGGCCACTTTTCTCCACCACCAACCGCGCACCCTCGT
TTCCACGCTTCACCCTCACCTCCTTCGATCATGGCGTTGGACGTGAAGGA
GAAGAACTTGATCAAGTTCATTTTAAAGCGCCTCGTGCCGATTCTAATTG
TCTCTTTTTCCTTTGCCTCCTACATGGAGCTGTGGGACCAACCCGTCCGA
CTGCTGGGTTTTTCCCTGTTGGCTGTCTGGCTGGTGAAATTCCTGAACCT
GGCCCTGTATTTTGCGCGTGTCAAGCTTTTCCCTCGCGACCCTTTGTCGT
ACGGAAAGTGGGCCATTGTGACAGGTGCCACAGCAGGCATTGGTGAAGCT
TTTGCCTACGAGCTGGCTTCGCGTGGTATGAATGTTATAATTATCTCACG
TTCCATGGAAAAGCTGGAAGAGGTAAAGAAGGGCATTTTGAAAGAAACTC
CTGGGGTGGAGGTTCGGTGCATTGCCTATGACTACACGGATCGAGAAGGT
GCTGATGCCTTCTTTGCAACGTTGTCTGAGACGTGCAAGAGTTTGGTGGG
TGGTCTGGGCATTTTGGTGAATAACGTGGGGATGGTCAATGCGGTAAGTC
CCGTGGGAGGAGCAGGAGGGATGAAGGGAGGGGGATGGAGAGCGGAGGGA
GTCTGTATGGCGCCTCATATTTGGGGCATGCGGATATCCATCCCATTCCG
GCCAATGCCCACGTTTGCTTTAGTAATTCGTTCCACGCACACGCAGTGAG
CCAAGCTTTTAACCCTTTTTCCCTCCCTTCCTTTCCCATCCTACATACCG
TCCCTCCCCATCTCGTTTCCCTAGCTCCCGGAATACATGCACCAATTGGA
CGCGCGCACCACCTATGGCATCCTTCAAGTCAATGTCGAAGGGACCGTGC
GCACGACCCGGGCAGTCGCCCCTTTCCTGATCGATCAGCGCAAGGGTGCT
ATAATCAATGTCTCATCAGGTTCGGGGAATCACCCGACCCCAATGATCAG
CTGTTATGCGTCCACAAAGGCGTTTATCACCCAATTTTCCCAGTGCTTGT
CACATGAACTGAGAGAGTTTGGGGTGGATGTGTTGGTGGTCACCCCTTAC
TATGTGATCTCCAATCAATTTCGACGGAAGAAGGCGACCTACATCGCACC
TACGGCCCAGCGGATGGTCCAAGACACTCTGCCCATCTTGGGTTACTGCG
ACGTGGCTTACCCTTACTGGTTTCACGCCCTATGCGGGTTCTTTGTGGGG
TTGTATTGGGATGTGGGAGGGTCGGTGATGGCTGCCATGCGGAGGAATCG
TGCTCGGATTATGGAGGCGGCGGCGGCCAAGAAGGGAAAGGGGGAGTAAG
ATATGGAGTGGAAATCAGATAGAGATATAACTAGGGAGGGGTCACCGGCA
GTAGCGGCGGGTGTATAAAAGGCAACGGGGAAAGGGAGAAAAGGAAAAAA
GAGAAGGATGAAAAAAGGATGGTTATGATGAAAGCAGGGAGACAGAGATC
AAGAGAGTGAGCAGACAAAGAGTAGCAAGCGATAGCTAGGACGATGACGA
TGATGATGACGGCGGACAGTCGACGGACGAGCAGGACTGCCGCCAGCAGA
GTCGCCTGTGCTCTATTTTGTTTGTGTATGTCAGAAAGATTGTCGGATTG
GGGTGGGGATAGTGTCGTGCATGTCCGTCTCTTCTCCTCCGTCTTGTTTG
ACCTTACATGTGTACCATCAAAGCAGGAACATCGTTAGCAGCAAAATGAA
AGAATAAAACGAAGGGGGAAAAGAAGTAAGGAAGAAATTATGGCAA
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Coding sequence (CDS) from alignment at scaffold_7:798909..800754-

>mRNA_3155 ID=mRNA_3155|Name=jgi.p|Nanoce1779_2|584750|organism=Nannochloropsis oceanica|type=CDS|length=2076bp|location=Sequence derived from alignment at scaffold_7:798909..800754- (Nannochloropsis oceanica)
CTCCCGGAATACATGCACCAATTGGACGCGCGCACCACCTATGGCATCCT
TCAAGTCAATGTCGAAGGGACCGTGCGCACGACCCGGGCAGTCGCCCCTT
TCCTGATCGATCAGCGCAAGGGTGCTATAATCAATGTCTCATCAGGTTCG
GGGAATCACCCGACCCCAATGATCAGCTGTTATGCGTCCACAAAGGCGTT
TATCACCCAATTTTCCCAGTGCTTGTCACATGAACTGAGAGAGTTTGGGG
TGGATGTGTTGGTGGTCACCCCTTACTATGTGATCTCCAATCAATTTCGA
CGGAAGAAGGCGACCTACATCGCACCTACGGCCCAGCGGATGGTCCAAGA
CACTCTGCCCATCTTGGGTTACTGCGACGTGGCTTACCCTTACTGGTTTC
ACGCCCTATGCGGGTTCTTTGTGGGGTTGTATTGGGATGTGGGAGGGTCG
GTGATGGCTGCCATGCGGAGGAATCGTGCTCGGATTATGGAGGCGGCGGC
GGCCAAGAAGGGAAAGGGGGAGTAAATGGCGTTGGACGTGAAGGAGAAGA
ACTTGATCAAGTTCATTTTAAAGCGCCTCGTGCCGATTCTAATTGTCTCT
TTTTCCTTTGCCTCCTACATGGAGCTGTGGGACCAACCCGTCCGACTGCT
GGGTTTTTCCCTGTTGGCTGTCTGGCTGGTGAAATTCCTGAACCTGGCCC
TGTATTTTGCGCGTGTCAAGCTTTTCCCTCGCGACCCTTTGTCGTACGGA
AAGTGGGCCATTGTGACAGGTGCCACAGCAGGCATTGGTGAAGCTTTTGC
CTACGAGCTGGCTTCGCGTGGTATGAATGTTATAATTATCTCACGTTCCA
TGGAAAAGCTGGAAGAGGTAAAGAAGGGCATTTTGAAAGAAACTCCTGGG
GTGGAGGTTCGGTGCATTGCCTATGACTACACGGATCGAGAAGGTGCTGA
TGCCTTCTTTGCAACGTTGTCTGAGACGTGCAAGAGTTTGGTGGGTGGTC
TGGGCATTTTGGTGAATAACGTGGGGATGGTCAATGCGCTCCCGGAATAC
ATGCACCAATTGGACGCGCGCACCACCTATGGCATCCTTCAAGTCAATGT
CGAAGGGACCGTGCGCACGACCCGGGCAGTCGCCCCTTTCCTGATCGATC
AGCGCAAGGGTGCTATAATCAATGTCTCATCAGGTTCGGGGAATCACCCG
ACCCCAATGATCAGCTGTTATGCGTCCACAAAGGCGTTTATCACCCAATT
TTCCCAGTGCTTGTCACATGAACTGAGAGAGTTTGGGGTGGATGTGTTGG
TGGTCACCCCTTACTATGTGATCTCCAATCAATTTCGACGGAAGAAGGCG
ACCTACATCGCACCTACGGCCCAGCGGATGGTCCAAGACACTCTGCCCAT
CTTGGGTTACTGCGACGTGGCTTACCCTTACTGGTTTCACGCCCTATGCG
GGTTCTTTGTGGGGTTGTATTGGGATGTGGGAGGGTCGGTGATGGCTGCC
ATGCGGAGGAATCGTGCTCGGATTATGGAGGCGGCGGCGGCCAAGAAGGG
AAAGGGGGAGTAAATGGCGTTGGACGTGAAGGAGAAGAACTTGATCAAGT
TCATTTTAAAGCGCCTCGTGCCGATTCTAATTGTCTCTTTTTCCTTTGCC
TCCTACATGGAGCTGTGGGACCAACCCGTCCGACTGCTGGGTTTTTCCCT
GTTGGCTGTCTGGCTGGTGAAATTCCTGAACCTGGCCCTGTATTTTGCGC
GTGTCAAGCTTTTCCCTCGCGACCCTTTGTCGTACGGAAAGTGGGCCATT
GTGACAGGTGCCACAGCAGGCATTGGTGAAGCTTTTGCCTACGAGCTGGC
TTCGCGTGGTATGAATGTTATAATTATCTCACGTTCCATGGAAAAGCTGG
AAGAGGTAAAGAAGGGCATTTTGAAAGAAACTCCTGGGGTGGAGGTTCGG
TGCATTGCCTATGACTACACGGATCGAGAAGGTGCTGATGCCTTCTTTGC
AACGTTGTCTGAGACGTGCAAGAGTTTGGTGGGTGGTCTGGGCATTTTGG
TGAATAACGTGGGGATGGTCAATGCG
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Synonyms
Publications