jgi.p|Nanoce1779_2|584742, mRNA_3153 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584742
Unique Name	mRNA_3153
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3034
Alignment location	scaffold_7:791783..795467 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584828
Track	FilteredModels2
ProteinId	584742

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:791783..795467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584742	gene_3153	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584742	mRNA_3153-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3153	CDS_3153	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:791783..795467+
coding sequence from alignment at scaffold_7:791783..795467+

mRNA sequence

>mRNA_3153 ID=mRNA_3153|Name=jgi.p|Nanoce1779_2|584742|organism=Nannochloropsis oceanica|type=mRNA|length=3034bp
CCATTGTCAAAAGCTCCTCGTTTCTCTCCACCGGGAACTCCAACCCCAGC
ATGGAACCAGTGGAACTGCTATTGCTGTTGCTGCTGCTGGACACCGTAGC
CCCATTCTCATTCGCCTGCACCCTTAATATGGCCAGGATCCGAGTAATCA
TCTCGGATGCCCCACACGTAATCTCGAACCCATGTCTGTAACTATACAGG
TCCCATGTTCGAAGAATAGCGAGTGTCTTCCCATACTGCAGCTGCCTAGT
AGTGACCATACATTGCGCTGTCTCTCCATAGATAATCGCGGCCATGCGGC
AGTGGTCGTAGCAACGAAGACCAGGAGCGGCATGAAGGACAGTGACAAGG
TCCCAAGGCGGAGGGTACCTGTCGAGCATCATACTGGTGCTGCTGATGGT
AAAAGTGGTGGTGTGGGAAGGGATGTCTTTGATGCTGCTGCTGTTGATGC
TGCTGTTGGTGTTGCTGCTGCCCCCAAAGTTGCTCAGAGCACTGCTCCGG
CCGCTATCCATAGTGGTGCCGATGGTGGTACAGGAGGATGTGGAGGAGAT
TAAGGAGGAGGGGAAGGCATGTGTGGACGGAGGAAGGTGGGGACTGCTGT
TGCCACTCTCATTCTCAGGAGAGGCGGATGCCAGTGGGGGAGGTAAAACT
GCACCCGTCGACCGAGCAAGTATCGCAATAGCCTTGTGCTCTACCTGCTG
CACATCGTGCTGCTGCGGCTTCTGCTGCTGCGGCTGCTGCCGCTCCCATC
TTTGGGTGTGGTCCAGGGTAGATGGATGGACGTTGCGACAATCGGCGACA
GATGCGGTGGTTTGTTGGAGAAAGTAGGAAGGGGAGACGCCGGGCACAGT
GATTGCCATTGTCCCGGGTATTGGGCGGGCAGGGATGGGAGCGACTGCCG
AAGCGGAAAGGGTGGGAGAAAAGATGTTGGTTGTGGGCATGGGAAGGATC
GGAAGAGGAGAACTGCTGTGAAGTTGATAAGACGAGGGAGGTGGTGGGGG
TGGCTGTGGGTTCCGGGGACGCTTTACACCGACTTGACGACAAGGGAGGG
GGGGGGGGCTGAGCGGAGGTGGTGGTCGCGGGCTGAGGGGGGCCCAGGGC
GGGCTGTTTCTCTTGGTCCAGCTGGTGCGAAGACGTCATGCTCGACTGCG
GTGCCTGCAGGGAAAGCGAGTGTTGAGGACGAGAAGCATTGCTACTGCTG
CTATTTCTGCTGCTTTTGCACTCCCCCCGGGCTTCCTTTCCACCACCTCG
CGCTTGTACTGCTGCGGCGGGCGGACGGGTGAGGAGTGTTTGATGTTGCC
AATGCTTCTCATGCACAGCCATGGATGATAGTGGAATATTTGTGGGCGTC
AGCACCTCTGTGGCAGCATCAGGAGGCAATCCGTTTCCAAGTCTATAGGT
AGACATTTCTTCCTCCTCGATCGACAGAGGGAGGAGGGGCACCATTGGCT
GCTGGTGCAGGCCCAGGACGCTGCTGCTACTACTGCCGCTGCAACTGTTC
GCGGCGACGACGGTGGCAGGATCATGTTGACGGGAAATATCGGCCTTGCC
TTTTGAGCCTTTACCTTTCCCTCCCACCTTCATTGCTCCTGCCGCCGTGG
TGGTTCTGGTGGCTGATTTGATTGATTTGGGTGTCTTGGGATTCTTGTTC
ATACTGCCAGGTGGGCGGCCGCGCCGAGGTTTCCCTTGTATTGGTATTGG
TGTTGGTGCTGCTATCACAGATGTTGCTGTTGCTGCTGTTGTCGCGGCGG
CGGCTGAACCTGTGGAGGCAGAGGCTGAGCTGGCAGTAGGATGGGAGGCA
GCGGAGGAAGAGGAAGATGTGGACGAGACGGAGGCAACGGAGGAGGACGA
AGACATGGGGTGGGAAGGAGGAGGGAGAGGAGGAGGCGCGGGACAAAAGT
GGCGGGGGGCTTGCAGTTCGGGGGGGGGTACACCGAAACAGGGGGGAGGC
ATGGTGGAGTAGTGGCGAGCGGGCTGAGAGAGAAAGGGTGCTTGGACGGG
TGGGATTGGTGGGTGATGCTGGTAGCCAAAGTCGTCTTGCTGTTGCTGCT
GGAGCTGTTGCTGCTGTTGCTGTTGCAGTCGCTGCTGGTGGTGGTCCACC
TGCTCAAATAGGTGCCGCTCCTCCTCTTGTTGCTCCCGGGCATGATCTTG
GTAGACAGATGGGGGGATAGCAGTTACGAAGGGAGGAGGAGGACGAAGGG
GAGGATGAGAAGGAGGAGGAGAAGACGAAAAAGACGAAAGGTGAGGTTGA
GGAGGAGGAGGGGGAGGAAGAAAAAGAGGAGGAAGAGGTGTGTGCTTCCA
GCTGCCGACGCTCCTGCTACTGACCGACCCAGGAGAATTAGGCACCGAGC
CAGATTGATGCTTGTGCGGCCTACCCACGCCGCGCACCTGGGGAATGCAC
TCTCGCTTAAGTCGGATGCAGCGGGAGCATGGGTACTCCTTGTCACACTT
CACCTTGGATTGACGGCAGCTCATGCACGAGGTGCGCATGGCCGAGTCCT
CGCTGTTTATGTCAGAGTAGATGGGGGAAGGGGGCATCGGGGGAAGCCGG
TCTACGTCCGAGTAGGCGGCGCTCATCTCGTCCTCGTCTCGCTCTTGTTG
GTCGTCCATTGTCTCCTTGCCGTTGCCACCATCGTAGAGGGAGTGAGAAG
CGGCCTCACCATCGTTGCCGTCATCGTAGAGGGAGTGAGGGCCGTCGTTG
TCAAAGGTCCCATGCTCGTGCCAATGCTCATCTTGTTCGTCCTCATGCCG
ACAGTTATCGGCGTTGTTGTCTTGCTGGCCCTGTTGCTGGTGCTCCTGCA
GATCCCACCTCTGGGGATACTCTTTCTGCGCGGATTGCTGCAGGCGATCC
CGTTCTTGCTCCTCTTGGAACTCAAAATCGGGGTAACAACCCTCATCGTC
CTCGTCCCCTTCCAGGCTCACGTCCCGGGAAGGAGTGGGCGAGACCGGCA
TAGGGCCGCTGGAAGAAGCGAAGGGGGCGCTTCCACACGGCCCGGAGGCT
GATCTCGTTTCAAAACCTGTGAGTATGGGGTATC

protein sequence of jgi.p|Nanoce1779_2|584742

>mRNA_3153-protein ID=mRNA_3153-protein|Name=jgi.p|Nanoce1779_2|584742|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MILVDRWGDSSYEGRRRTKGRMRRRRRRRKRRKVRLRRRRGRKKKRRKRC
VLPAADAPATDRPRRIRHRARLMLVRPTHAAHLGNALSLKSDAAGAWVLL
VTLHLGLTAAHARGAHGRVLAVYVRVDGGRGHRGKPVYVRVGGAHLVLVS
LLLVVHCLLAVATIVEGVRSGLTIVAVIVEGVRAVVVKGPMLVPMLILFV
LMPTVIGVVVLLALLLVLLQIPPLGILFLRGLLQAIPFLLLLELKIGVTT
LIVLVPFQAHVPGRSGRDRHRAAGRSEGGASTRPGG*

mRNA from alignment at scaffold_7:791783..795467+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3153 ID=mRNA_3153|Name=jgi.p|Nanoce1779_2|584742|organism=Nannochloropsis oceanica|type=mRNA|length=3685bp|location=Sequence derived from alignment at scaffold_7:791783..795467+ (Nannochloropsis oceanica)
CCATTGTCAAAAGCTCCTCGTTTCTCTCCACCGGGAACTCCAACCCCAGC
ATGGAACCAGTGGAACTGCTATTGCTGTTGCTGCTGCTGGACACCGTAGC
CCCATTCTCATTCGCCTGCACCCTTAATATGGCCAGGATCCGAGTAATCA
TCTCGGATGCCCCACACGTAATCTCGAACCCATGTCTGTAACTATACAGG
TCCCATGTTCGAAGAATAGCGAGTGTCTTCCCATACTGCAGCTGCCTAGT
AGTGACCATACATTGCGCTGTCTCTCCATAGATAATCGCGGCCATGCGGC
AGTGGTCGTAGCAACGAAGACCAGGAGCGGCATGAAGGACAGTGACAAGG
TCCCAAGGCGGAGGGTACCTGTCGAGCATCATACTGGTGCTGCTGATGGT
AAAAGTGGTGGTGTGGGAAGGGATGTCTTTGATGCTGCTGCTGTTGATGC
TGCTGTTGGTGTTGCTGCTGCCCCCAAAGTTGCTCAGAGCACTGCTCCGG
CCGCTATCCATAGTGGTGCCGATGGTGGTACAGGAGGATGTGGAGGAGAT
TAAGGAGGAGGGGAAGGCATGTGTGGACGGAGGAAGGTGGGGACTGCTGT
TGCCACTCTCATTCTCAGGAGAGGCGGATGCCAGTGGGGGAGGTAAAACT
GCACCCGTCGACCGAGCAAGTATCGCAATAGCCTTGTGCTCTACCTGCTG
CACATCGTGCTGCTGCGGCTTCTGCTGCTGCGGCTGCTGCCGCTCCCATC
TTTGGGTGTGGTCCAGGGTAGATGGATGGACGTTGCGACAATCGGCGACA
GATGCGGTGGTTTGTTGGAGAAAGTAGGAAGGGGAGACGCCGGGCACAGT
GATTGCCATTGTCCCGGGTATTGGGCGGGCAGGGATGGGAGCGACTGCCG
AAGCGGAAAGGGTGGGAGAAAAGATGTTGGTTGTGGGCATGGGAAGGATC
GGAAGAGGAGAACTGCTGTGAAGTTGATAAGACGAGGGAGGTGGTGGGGG
TGGCTGTGGGTTCCGGGGACGCTTTACACCGACTTGACGACAAGGGAGGG
GGGGGGGGCTGAGCGGAGGTGGTGGTCGCGGGCTGAGGGGGGCCCAGGGC
GGGCTGTTTCTCTTGGTCCAGCTGGTGCGAAGACGTCATGCTCGACTGCG
GTGCCTGCAGGGAAAGCGAGTGTTGAGGACGAGAAGCATTGCTACTGCTG
CTATTTCTGCTGCTTTTGCACTCCCCCCGGGCTTCCTTTCCACCACCTCG
CGCTTGTACTGCTGCGGCGGGCGGACGGGTGAGGAGTGTTTGATGTTGCC
AATGCTTCTCATGCACAGCCATGGATGATAGTGGAATATTTGTGGGCGTC
AGCACCTCTGTGGCAGCATCAGGAGGCAATCCGTTTCCAAGTCTATAGGT
AGACATTTCTTCCTCCTCGATCGACAGAGGGAGGAGGGGCACCATTGGCT
GCTGGTGCAGGCCCAGGACGCTGCTGCTACTACTGCCGCTGCAACTGTTC
GCGGCGACGACGGTGGCAGGATCATGTTGACGGGAAATATCGGCCTTGCC
TTTTGAGCCTTTACCTTTCCCTCCCACCTTCATTGCTCCTGCCGCCGTGG
TGGTTCTGGTGGCTGATTTGATTGATTTGGGTGTCTTGGGATTCTTGTTC
ATACTGCCAGGTGGGCGGCCGCGCCGAGGTTTCCCTTGTATTGGTATTGG
TGTTGGTGCTGCTATCACAGATGTTGCTGTTGCTGCTGTTGTCGCGGCGG
CGGCTGAACCTGTGGAGGCAGAGGCTGAGCTGGCAGTAGGATGGGAGGCA
GCGGAGGAAGAGGAAGATGTGGACGAGACGGAGGCAACGGAGGAGGACGA
AGACATGGGGTGGGAAGGAGGAGGGAGAGGAGGAGGCGCGGGACAAAAGT
GGCGGGGGGCTTGCAGTTCGGGGGGGGGTACACCGAAACAGGGGGGAGGC
ATGGTGGAGTAGTGGCGAGCGGGCTGAGAGAGAAAGGGTGCTTGGACGGG
TGGGATTGGTGGGTGATGCTGGTAGCCAAAGTCGTCTTGCTGTTGCTGCT
GGAGCTGTTGCTGCTGTTGCTGTTGCAGTCGCTGCTGGTGGTGGTCCACC
TGCTCAAATAGGTGCCGCTCCTCCTCTTGTTGCTCCCGGGCATGATCTTG
GTAGACAGATGGGGGGATAGCAGTTACGAAGGGAGGAGGAGGACGAAGGG
GAGGATGAGAAGGAGGAGGAGAAGACGAAAAAGACGAAAGGTGAGGTTGA
GGAGGAGGAGGGGGAGGAAGAAAAAGAGGAGGAAGAGGTGTGTGCTTCCA
GCTGCCGACGCTCCTGCTACTGACCGACCCAGGAGAATTAGGCACCGAGC
CAGATTGATGCTTGTGCGGCCTACCCACGCCGCGCACCTGGGGAATGCAC
TCTCGCTTAAGTCGGATGCAGCGGGAGCATGGGTACTCCTTGTCACACTT
CACCTTGGATTGACGGCAGCTCATGCACGAGGTGCGCATGGCCGAGTCCT
CGCTGTTTATGTCAGAGTAGATGGGGGAAGGGGGCATCGGGGGAAGCCGG
TCTACGTCCGAGTAGGCGGCGCTCATCTCGTCCTCGTCTCGCTCTTGTTG
GTCGTCCATTGTCTCCTTGCCGTTGCCACCATCGTAGAGGGAGTGAGAAG
CGGCCTCACCATCGTTGCCGTCATCGTAGAGGGAGTGAGGGCCGTCGTTG
TCAAAGGTCCCATGCTCGTGCCAATGCTCATCTTGTTCGTCCTCATGCCG
ACAGTTATCGGCGTTGTTGTCTTGCTGGCCCTGTTGCTGGTGCTCCTGCA
GATCCCACCTCTGGGGATACTCTTTCTGCGCGGATTGCTGCAGGCGATCC
CGTTCTTGCTCCTCTTGGAACTCAAAATCGGGGTAACAACCCTCATCGTC
CTCGTCCCCTTCCAGGCTCACGTCCCGGGAAGGAGTGGGCGAGACCGGCA
TAGGGCCGCTGCTACGGGGTGTGTATGTGATTTAAAATAAGGATCGGGGT
GAGTGAGGCTTCTGAAGATAGTGGATGCTTGGTGGTAGTCGCTCTCATCC
ACCTTGTCCATGTGCGTGTTACTGCATCGCAACGGCAACGGTCTGCATGG
AAGCCAGTGTGTGTTGACGTATACACGAACCGAGTGTTTATGCTTGTGGG
TGAGGGTGAGAAAAGTCATATGATTATGTTCAGGGTCACAGAGCGAAATC
TACTTCGAAATAGGAAGGCGGGTGGTAGGAAGAAATGCCACCCGAACGAC
CACATCTGCGTCATACCCCTCAGGAAGCATTGCCTAAGTTTGATATTGAA
TCACAAGAGCGTACGACAGTGGTGCACTTCACACTTTCGGGTGTCCAATC
GATACTTCACCCGTCCATTCAAACAAGACGAAAGGACGATGTGTGCAGCC
GCTAGGGCCCGCAATAGCAGCCACGTGAGCTCTGGTGAGCCCCCTGCTAA
GGAACTTGGGCCCGAAAAGGGTATAAGCATTGTTTGCGTGGTTGATTGTG
CCATGAGATGTTGCGGGGTCCCATGGCTCCGGCCATGCAAGGGCTGCATT
AGCAAGCACCATTTATTGGTGTGCTGGAGGGGAATCCAATTGACACACTT
AAGACGCACCTGGAAGAAGCGAAGGGGGCGCTTCCACACGGCCCGGAGGC
TGATCTCGTTTCAAAACCTGTGAGTATGGGGTATC

Coding sequence (CDS) from alignment at scaffold_7:791783..795467+

>mRNA_3153 ID=mRNA_3153|Name=jgi.p|Nanoce1779_2|584742|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_7:791783..795467+ (Nannochloropsis oceanica)
ATGATCTTGGTAGACAGATGGGGGGATAGCAGTTACGAAGGGAGGAGGAG
GACGAAGGGGAGGATGAGAAGGAGGAGGAGAAGACGAAAAAGACGAAAGG
TGAGGTTGAGGAGGAGGAGGGGGAGGAAGAAAAAGAGGAGGAAGAGGTGT
GTGCTTCCAGCTGCCGACGCTCCTGCTACTGACCGACCCAGGAGAATTAG
GCACCGAGCCAGATTGATGCTTGTGCGGCCTACCCACGCCGCGCACCTGG
GGAATGCACTCTCGCTTAAGTCGGATGCAGCGGGAGCATGGGTACTCCTT
GTCACACTTCACCTTGGATTGACGGCAGCTCATGCACGAGGTGCGCATGG
CCGAGTCCTCGCTGTTTATGTCAGAGTAGATGGGGGAAGGGGGCATCGGG
GGAAGCCGGTCTACGTCCGAGTAGGCGGCGCTCATCTCGTCCTCGTCTCG
CTCTTGTTGGTCGTCCATTGTCTCCTTGCCGTTGCCACCATCGTAGAGGG
AGTGAGAAGCGGCCTCACCATCGTTGCCGTCATCGTAGAGGGAGTGAGGG
CCGTCGTTGTCAAAGGTCCCATGCTCGTGCCAATGCTCATCTTGTTCGTC
CTCATGCCGACAGTTATCGGCGTTGTTGTCTTGCTGGCCCTGTTGCTGGT
GCTCCTGCAGATCCCACCTCTGGGGATACTCTTTCTGCGCGGATTGCTGC
AGGCGATCCCGTTCTTGCTCCTCTTGGAACTCAAAATCGGGGTAACAACC
CTCATCGTCCTCGTCCCCTTCCAGGCTCACGTCCCGGGAAGGAGTGGGCG
AGACCGGCATAGGGCCGCTGGAAGAAGCGAAGGGGGCGCTTCCACACGGC
CCGGAGGCTGAATGATCTTGGTAGACAGATGGGGGGATAGCAGTTACGAA
GGGAGGAGGAGGACGAAGGGGAGGATGAGAAGGAGGAGGAGAAGACGAAA
AAGACGAAAGGTGAGGTTGAGGAGGAGGAGGGGGAGGAAGAAAAAGAGGA
GGAAGAGGTGTGTGCTTCCAGCTGCCGACGCTCCTGCTACTGACCGACCC
AGGAGAATTAGGCACCGAGCCAGATTGATGCTTGTGCGGCCTACCCACGC
CGCGCACCTGGGGAATGCACTCTCGCTTAAGTCGGATGCAGCGGGAGCAT
GGGTACTCCTTGTCACACTTCACCTTGGATTGACGGCAGCTCATGCACGA
GGTGCGCATGGCCGAGTCCTCGCTGTTTATGTCAGAGTAGATGGGGGAAG
GGGGCATCGGGGGAAGCCGGTCTACGTCCGAGTAGGCGGCGCTCATCTCG
TCCTCGTCTCGCTCTTGTTGGTCGTCCATTGTCTCCTTGCCGTTGCCACC
ATCGTAGAGGGAGTGAGAAGCGGCCTCACCATCGTTGCCGTCATCGTAGA
GGGAGTGAGGGCCGTCGTTGTCAAAGGTCCCATGCTCGTGCCAATGCTCA
TCTTGTTCGTCCTCATGCCGACAGTTATCGGCGTTGTTGTCTTGCTGGCC
CTGTTGCTGGTGCTCCTGCAGATCCCACCTCTGGGGATACTCTTTCTGCG
CGGATTGCTGCAGGCGATCCCGTTCTTGCTCCTCTTGGAACTCAAAATCG
GGGTAACAACCCTCATCGTCCTCGTCCCCTTCCAGGCTCACGTCCCGGGA
AGGAGTGGGCGAGACCGGCATAGGGCCGCTGGAAGAAGCGAAGGGGGCGC
TTCCACACGGCCCGGAGGCTGA

Synonyms

Publications