jgi.p|Nanoce1779_2|564928, mRNA_3152 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564928
Unique NamemRNA_3152
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length405
Alignment locationscaffold_7:792205..792609 +

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Properties
Property NameValue
TranscriptId565014
TrackFilteredModels2
ProteinId564928
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:792205..792609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564928gene_3152Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564928mRNA_3152-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3152CDS_3152Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3152 ID=mRNA_3152|Name=jgi.p|Nanoce1779_2|564928|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
ATGTCTTTGATGCTGCTGCTGTTGATGCTGCTGTTGGTGTTGCTGCTGCC
CCCAAAGTTGCTCAGAGCACTGCTCCGGCCGCTATCCATAGTGGTGCCGA
TGGTGGTACAGGAGGATGTGGAGGAGATTAAGGAGGAGGGGAAGGCATGT
GTGGACGGAGGAAGGTGGGGACTGCTGTTGCCACTCTCATTCTCAGGAGA
GGCGGATGCCAGTGGGGGAGGTAAAACTGCACCCGTCGACCGAGCAAGTA
TCGCAATAGCCTTGTGCTCTACCTGCTGCACATCGTGCTGCTGCGGCTTC
TGCTGCTGCGGCTGCTGCCGCTCCCATCTTTGGGTGTGGTCCAGGGTAGA
TGGATGGACGTTGCGACAATCGGCGACAGATGCGGTGGTTTGTTGGAGAA
AGTAG
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protein sequence of jgi.p|Nanoce1779_2|564928

>mRNA_3152-protein ID=mRNA_3152-protein|Name=jgi.p|Nanoce1779_2|564928|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MSLMLLLLMLLLVLLLPPKLLRALLRPLSIVVPMVVQEDVEEIKEEGKAC
VDGGRWGLLLPLSFSGEADASGGGKTAPVDRASIAIALCSTCCTSCCCGF
CCCGCCRSHLWVWSRVDGWTLRQSATDAVVCWRK*
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mRNA from alignment at scaffold_7:792205..792609+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3152 ID=mRNA_3152|Name=jgi.p|Nanoce1779_2|564928|organism=Nannochloropsis oceanica|type=mRNA|length=405bp|location=Sequence derived from alignment at scaffold_7:792205..792609+ (Nannochloropsis oceanica)
ATGTCTTTGATGCTGCTGCTGTTGATGCTGCTGTTGGTGTTGCTGCTGCC
CCCAAAGTTGCTCAGAGCACTGCTCCGGCCGCTATCCATAGTGGTGCCGA
TGGTGGTACAGGAGGATGTGGAGGAGATTAAGGAGGAGGGGAAGGCATGT
GTGGACGGAGGAAGGTGGGGACTGCTGTTGCCACTCTCATTCTCAGGAGA
GGCGGATGCCAGTGGGGGAGGTAAAACTGCACCCGTCGACCGAGCAAGTA
TCGCAATAGCCTTGTGCTCTACCTGCTGCACATCGTGCTGCTGCGGCTTC
TGCTGCTGCGGCTGCTGCCGCTCCCATCTTTGGGTGTGGTCCAGGGTAGA
TGGATGGACGTTGCGACAATCGGCGACAGATGCGGTGGTTTGTTGGAGAA
AGTAG
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Coding sequence (CDS) from alignment at scaffold_7:792205..792609+

>mRNA_3152 ID=mRNA_3152|Name=jgi.p|Nanoce1779_2|564928|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_7:792205..792609+ (Nannochloropsis oceanica)
ATGTCTTTGATGCTGCTGCTGTTGATGCTGCTGTTGGTGTTGCTGCTGCC
CCCAAAGTTGCTCAGAGCACTGCTCCGGCCGCTATCCATAGTGGTGCCGA
TGGTGGTACAGGAGGATGTGGAGGAGATTAAGGAGGAGGGGAAGGCATGT
GTGGACGGAGGAAGGTGGGGACTGCTGTTGCCACTCTCATTCTCAGGAGA
GGCGGATGCCAGTGGGGGAGGTAAAACTGCACCCGTCGACCGAGCAAGTA
TCGCAATAGCCTTGTGCTCTACCTGCTGCACATCGTGCTGCTGCGGCTTC
TGCTGCTGCGGCTGCTGCCGCTCCCATCTTTGGGTGTGGTCCAGGGTAGA
TGGATGGACGTTGCGACAATCGGCGACAGATGCGGTGGTTTGTTGGAGAA
AGTAG
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Synonyms
Publications