jgi.p|Nanoce1779_2|584741, mRNA_3151 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584741
Unique Name	mRNA_3151
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2151
Alignment location	scaffold_7:789657..791807 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584827
Track	FilteredModels2
ProteinId	584741

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:789657..791807 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584741	gene_3151	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584741	mRNA_3151-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3151	CDS_3151	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:789657..791807-
coding sequence from alignment at scaffold_7:789657..791807-

mRNA sequence

>mRNA_3151 ID=mRNA_3151|Name=jgi.p|Nanoce1779_2|584741|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp
AGAAACGAGGAGCTTTTGACAATGGATAGGGAGAAGGCCCTGAATCCTGC
GAATATGCCACCGTATGTTGCCCGTCTCCGAGACGGGGGCGGAGGCGACT
TGGCCGTAGCTGGCTTCGTATATTGCTCGGGAGAGTTCCGCTTGTGGACC
TGCGACAGTTTTGCCTCTAAGTTTTTCTCTGCTGGGGCTGCGAATAAACG
GTTTGAGGAAATGAGGATTTTGCCCTCGTATTTGTTTGGACCGATCTTCT
CGCCGAATGACCGGCCGATTTTCTATCGGAATTTGATGGAGTATTTGTTG
AAGCCGACGGATGAGACGAAGGAGATGAATATGATCGCGGAGACCATGGA
GCGTGACGGGCGACTACATAGGTCATTTGTGCGCGCCAGGTACATGGTGC
TTAATGAGGGACAATACGCATGTTTTGCCTTGAGTATTTTGCCGATTCCA
GGGATGCCCAGCCGGTATGGGATGACTGCTTCATTCGCCCCCCTGCCTAC
TTCATCTTCCTCGTCTTCGATTTCGCCGTTGGCGTCGACAAATGGGTTCG
TGGCCTCCCCTTCTGCTGCTTTTTAGTAGCAGCAACAGGCTCAGGTTCTC
ACGGTGGGTACTGGCATGCAGCACGGGGTTGAGGGCAAGGACGAGGACGC
AAACGAGAAGAAGCGTGCGCATGTGGAAGGAGAGGAAGATTGGCGTGTCT
GCCAGTGGCCAGCGGATCAGGATGAACAGCTGCGTCTCCGCCACCAGGAT
CGACCCCAGTATCAGCAACTAAAAGACGAGAATGTGGAGAGTGATCAACA
GCAGCAGCATTACCGGCAACCTCAGGAAGAGGCAGTGAAAAGATTTGCCG
CAAAGAACGAAGAGAGTGTGAACATAAAGGGGGCGTTGAGAAGGAACACT
ACCATCATGTGTACTCCCCATTGACACACACATCCCTCACTTCCTCCCTC
AACAAGCGTAGCCACGACCACCCGAGGCAACAGCGGGACGTTGGGGAGTA
GCACTACCGAGCCCATCGACATCAAGCTCACAGCTGCCCCTCAGCAGCAG
CACTTGCAACAGCAGGGCCACCATCACCACTACCATCAACAGCAGCGGCT
GTACTCGCACTCTAACACCCACGTCTTGAACAAAAACTGAAGGCGATTTA
GTCCCTCGTTACATTTATCATGCATGTGTGAGTCATGTAAGCTGTCTTAC
CTCCTCACAAATGACAGGATTTCGATAAACATCGAGAGCAGTCGCGGGGT
AGGAGGAAGGAGCCGTGGTTGACGTGTGTAAACAAAACAAAAGAAATATA
ACGATCGAAAAGACACAAAAGATAGTTAGGTAGGGGGAAACGACTAGCCG
CGTGACAAGAAGGAAGCTTCATGTCCAGCACCGATTTTGTACGTGGGCGA
GAAAGTATCGATTGAAAGCCACCCATGGTGCTACCCCAAAACCATTAAGG
TGTTATCCTGTATTTTGAAGGCGGTATTGTGACCATGCCGTAAAAACATA
TCAACAAAGCACGCCCTTGAGTGGGGCCGTGTCTCTGTGAAAGTACTACA
CGTATACATACATTGAACACAAAGTTAGAGGATATTTTACTTATCTTGTT
TCTTGAGTTTCTTGAGGCTCATTTTATGGCGAATGCAGCAGCTGGGCAGA
CATGTATACTTATTAATTTAGATTCGCCTGGATCTTTCCATAAATAAATA
AATAGAACATGTCCACGGTCAAACGTTTTTTCCCAGTTGTGTGAATCCTC
GAGGGAGGCTCTTCACGCGTCTCCAAATCCGCCGAGACTATTTTGTTTGA
TTTGAGTTCGGCCTTGGTCGTCCGAATCTCGAACTCGAACTATCAAATAT
CAAGCTATTCGAAGGGAAACGAGAAGGGTCAACTCACAAAGACGAGGGGC
TACTGTAGAGAAGACACGATGGGCCCTTTGGTGAGAATGCTCAGGAATTG
TGAATCTGAATAAGGGCTTGTGTGCGTGGACAAGGATGTAGCAGGTTTTA
GCAAGCATGTTTAATCATAACGACACACAATGAAGATCCATCAGCTTTAG
TCACTACGTGGGTGCTTACAAAGGCGGAGGCGGTCGTGAGGATGCCAGTG
GGGGCCTCATGAAAAATGGTATCTTTAAGGGAAAGGTGGAAGATACCCTG
T

protein sequence of jgi.p|Nanoce1779_2|584741

>mRNA_3151-protein ID=mRNA_3151-protein|Name=jgi.p|Nanoce1779_2|584741|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MDREKALNPANMPPYVARLRDGGGGDLAVAGFVYCSGEFRLWTCDSFASK
FFSAGAANKRFEEMRILPSYLFGPIFSPNDRPIFYRNLMEYLLKPTDETK
EMNMIAETMERDGRLHRSFVRARYMVLNEGQYACFALSILPIPGMPSRYG
MTASFAPLPTSSSSSSISPLASTNGFVASPSAAF*

mRNA from alignment at scaffold_7:789657..791807-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3151 ID=mRNA_3151|Name=jgi.p|Nanoce1779_2|584741|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at scaffold_7:789657..791807- (Nannochloropsis oceanica)
AGAAACGAGGAGCTTTTGACAATGGATAGGGAGAAGGCCCTGAATCCTGC
GAATATGCCACCGTATGTTGCCCGTCTCCGAGACGGGGGCGGAGGCGACT
TGGCCGTAGCTGGCTTCGTATATTGCTCGGGAGAGTTCCGCTTGTGGACC
TGCGACAGTTTTGCCTCTAAGTTTTTCTCTGCTGGGGCTGCGAATAAACG
GTTTGAGGAAATGAGGATTTTGCCCTCGTATTTGTTTGGACCGATCTTCT
CGCCGAATGACCGGCCGATTTTCTATCGGAATTTGATGGAGTATTTGTTG
AAGCCGACGGATGAGACGAAGGAGATGAATATGATCGCGGAGACCATGGA
GCGTGACGGGCGACTACATAGGTCATTTGTGCGCGCCAGGTACATGGTGC
TTAATGAGGGACAATACGCATGTTTTGCCTTGAGTATTTTGCCGATTCCA
GGGATGCCCAGCCGGTATGGGATGACTGCTTCATTCGCCCCCCTGCCTAC
TTCATCTTCCTCGTCTTCGATTTCGCCGTTGGCGTCGACAAATGGGTTCG
TGGCCTCCCCTTCTGCTGCTTTTTAGTAGCAGCAACAGGCTCAGGTTCTC
ACGGTGGGTACTGGCATGCAGCACGGGGTTGAGGGCAAGGACGAGGACGC
AAACGAGAAGAAGCGTGCGCATGTGGAAGGAGAGGAAGATTGGCGTGTCT
GCCAGTGGCCAGCGGATCAGGATGAACAGCTGCGTCTCCGCCACCAGGAT
CGACCCCAGTATCAGCAACTAAAAGACGAGAATGTGGAGAGTGATCAACA
GCAGCAGCATTACCGGCAACCTCAGGAAGAGGCAGTGAAAAGATTTGCCG
CAAAGAACGAAGAGAGTGTGAACATAAAGGGGGCGTTGAGAAGGAACACT
ACCATCATGTGTACTCCCCATTGACACACACATCCCTCACTTCCTCCCTC
AACAAGCGTAGCCACGACCACCCGAGGCAACAGCGGGACGTTGGGGAGTA
GCACTACCGAGCCCATCGACATCAAGCTCACAGCTGCCCCTCAGCAGCAG
CACTTGCAACAGCAGGGCCACCATCACCACTACCATCAACAGCAGCGGCT
GTACTCGCACTCTAACACCCACGTCTTGAACAAAAACTGAAGGCGATTTA
GTCCCTCGTTACATTTATCATGCATGTGTGAGTCATGTAAGCTGTCTTAC
CTCCTCACAAATGACAGGATTTCGATAAACATCGAGAGCAGTCGCGGGGT
AGGAGGAAGGAGCCGTGGTTGACGTGTGTAAACAAAACAAAAGAAATATA
ACGATCGAAAAGACACAAAAGATAGTTAGGTAGGGGGAAACGACTAGCCG
CGTGACAAGAAGGAAGCTTCATGTCCAGCACCGATTTTGTACGTGGGCGA
GAAAGTATCGATTGAAAGCCACCCATGGTGCTACCCCAAAACCATTAAGG
TGTTATCCTGTATTTTGAAGGCGGTATTGTGACCATGCCGTAAAAACATA
TCAACAAAGCACGCCCTTGAGTGGGGCCGTGTCTCTGTGAAAGTACTACA
CGTATACATACATTGAACACAAAGTTAGAGGATATTTTACTTATCTTGTT
TCTTGAGTTTCTTGAGGCTCATTTTATGGCGAATGCAGCAGCTGGGCAGA
CATGTATACTTATTAATTTAGATTCGCCTGGATCTTTCCATAAATAAATA
AATAGAACATGTCCACGGTCAAACGTTTTTTCCCAGTTGTGTGAATCCTC
GAGGGAGGCTCTTCACGCGTCTCCAAATCCGCCGAGACTATTTTGTTTGA
TTTGAGTTCGGCCTTGGTCGTCCGAATCTCGAACTCGAACTATCAAATAT
CAAGCTATTCGAAGGGAAACGAGAAGGGTCAACTCACAAAGACGAGGGGC
TACTGTAGAGAAGACACGATGGGCCCTTTGGTGAGAATGCTCAGGAATTG
TGAATCTGAATAAGGGCTTGTGTGCGTGGACAAGGATGTAGCAGGTTTTA
GCAAGCATGTTTAATCATAACGACACACAATGAAGATCCATCAGCTTTAG
TCACTACGTGGGTGCTTACAAAGGCGGAGGCGGTCGTGAGGATGCCAGTG
GGGGCCTCATGAAAAATGGTATCTTTAAGGGAAAGGTGGAAGATACCCTG
T

Coding sequence (CDS) from alignment at scaffold_7:789657..791807-

>mRNA_3151 ID=mRNA_3151|Name=jgi.p|Nanoce1779_2|584741|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_7:789657..791807- (Nannochloropsis oceanica)
ATGGATAGGGAGAAGGCCCTGAATCCTGCGAATATGCCACCGTATGTTGC
CCGTCTCCGAGACGGGGGCGGAGGCGACTTGGCCGTAGCTGGCTTCGTAT
ATTGCTCGGGAGAGTTCCGCTTGTGGACCTGCGACAGTTTTGCCTCTAAG
TTTTTCTCTGCTGGGGCTGCGAATAAACGGTTTGAGGAAATGAGGATTTT
GCCCTCGTATTTGTTTGGACCGATCTTCTCGCCGAATGACCGGCCGATTT
TCTATCGGAATTTGATGGAGTATTTGTTGAAGCCGACGGATGAGACGAAG
GAGATGAATATGATCGCGGAGACCATGGAGCGTGACGGGCGACTACATAG
GTCATTTGTGCGCGCCAGGTACATGGTGCTTAATGAGGGACAATACGCAT
GTTTTGCCTTGAGTATTTTGCCGATTCCAGGGATGCCCAGCCGGTATGGG
ATGACTGCTTCATTCGCCCCCCTGCCTACTTCATCTTCCTCGTCTTCGAT
TTCGCCGTTGGCGTCGACAAATGGGTTCGTGGCCTCCCCTTCTGCTGCTT
TTTAG

Synonyms

Publications