jgi.p|Nanoce1779_2|584736, mRNA_3150 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584736
Unique NamemRNA_3150
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1195
Alignment locationscaffold_7:787824..789312 -

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Properties
Property NameValue
TranscriptId584822
TrackFilteredModels2
ProteinId584736
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:787824..789312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584736gene_3150Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584736mRNA_3150-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3150CDS_3150Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3150 ID=mRNA_3150|Name=jgi.p|Nanoce1779_2|584736|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp
ACAGAGTAGCTTAAGTAGGATGCAAAGAATAATACCGGCCAAGATGCGGC
GGTCATCATCATTCTCCGTGGCGCTTTCCTGTCTTCTAGCTCTGCCTATG
ATTGCCATGCCCTATGCCTCAGCCTTCGTCCGCCCGCCTACCCGCCTGGA
AGCAGCGAGCTTGAGACGGCAGCCCCACACAATTAGCAAAATCTTGGAAC
CCTCCCCCTTTACACGTTTGCGGGCCCCTGCTGCTGCTGCCGCTGCGCCC
ACTGTACCTGCTGGTGCCTCGGGAAATGGTCTAGTGTCCCGCCTCAAAAG
CATGGCCAAAAACGTGGTCACGGGCCTCCCTGTTGTAGCCCTTTCTACCA
TTTCGGGCGGTTTCTTGGCGGGTTCATTGCACTCCGTCACGGGCCCTGAT
CATCTCGCAGCGCTCTTGCCTCGGTGCATCGGCAAGCGATGGTATCAAGC
TTTGCGCATCGGCGCGGTCTGGGGGTTAGGCCATGGGATCAGCGCCATTA
TCATGGGCATGGTTGCATTTTTCCTAAAGGGCAGATTATCGTCTTACTCA
CATAGCACACTCATACCAAAGTTATCGTTGTATACTGAGGTGTTAATCGG
CGTAAGTTTGATTATCATTGGCTTGTTGGGCTTGAAGGAGGCGGCAAGTT
TTGAAGCGCCTGCTGTGGTGACTGAACTGGACGAGACGACGGCCGTGGCG
AGCTCGTCGGGAACACTCAAAAAGGAGGCCTCGAGCAAGGCTATCTTCCT
CAATGGGCTCCTGCATGGTTTTTCTTGGGACGGCACGCCTACTCTGGCAC
CTGCATTAGCGTTTGATTCGTGGTTTCCCGTTATTACCTTCCTATGCTCC
TATGGATTGGGCACGATGCTTTCCATGAGCACGGCCACTTGTTTGATTGG
CGAGGGCACGATCAAGGTCGGACAGGCTTTTGACAGACCCAACATTCCCA
AGACGCTTGCGCAAGGGTCTTCGGTCGTGGCGATCATAGTTGGAATGGTC
TGGACGTTCAAGGGGTTGGTTTAAATGCGGGTAAAATTAAGGCAGAGGTG
TGGAGCAGAGAGGGAAGGGGATATGGGAACTAGAAAAAAAGCAAACTAGC
GCAATTTTGCTTGACGGTATACATACACAATAACAAAACGGACGACCTGA
ACGAAGAATGTGACCGCAAAAGAAAGAACCGACACTTAACCATGA
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protein sequence of jgi.p|Nanoce1779_2|584736

>mRNA_3150-protein ID=mRNA_3150-protein|Name=jgi.p|Nanoce1779_2|584736|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MQRIIPAKMRRSSSFSVALSCLLALPMIAMPYASAFVRPPTRLEAASLRR
QPHTISKILEPSPFTRLRAPAAAAAAPTVPAGASGNGLVSRLKSMAKNVV
TGLPVVALSTISGGFLAGSLHSVTGPDHLAALLPRCIGKRWYQALRIGAV
WGLGHGISAIIMGMVAFFLKGRLSSYSHSTLIPKLSLYTEVLIGVSLIII
GLLGLKEAASFEAPAVVTELDETTAVASSSGTLKKEASSKAIFLNGLLHG
FSWDGTPTLAPALAFDSWFPVITFLCSYGLGTMLSMSTATCLIGEGTIKV
GQAFDRPNIPKTLAQGSSVVAIIVGMVWTFKGLV*
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mRNA from alignment at scaffold_7:787824..789312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3150 ID=mRNA_3150|Name=jgi.p|Nanoce1779_2|584736|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp|location=Sequence derived from alignment at scaffold_7:787824..789312- (Nannochloropsis oceanica)
ACAGAGTAGCTTAAGTAGGATGCAAAGAATAATACCGGCCAAGATGCGGC
GGTCATCATCATTCTCCGTGGCGCTTTCCTGTCTTCTAGCTCTGCCTATG
ATTGCCATGCCCTATGCCTCAGCCTTCGTCCGCCCGCCTACCCGCCTGGA
AGCAGCGAGCTTGAGACGGCAGCCCCACACAATTAGCAAAATCTTGGAAC
CCTCCCCCTTTACACGTTTGCGGGCCCCTGCTGCTGCTGCCGCTGCGCCC
ACTGTACCTGCTGGTGCCTCGGGAAATGGTCTAGTGTCCCGCCTCAAAAG
CATGGCCAAAAACGTGGTCACGGGCCTCCCTGTTGTAGCCCTTTCTACCA
TTTCGGGCGGTTTCTTGGCGGGTTCATTGCACTCCGTCACGGGTATGTAC
GGTTTCCAGGTCAATCGATAACTACCGTACATATTCTCCCCTGCTTTGTC
TTACTCCCTTCAGTCCATCTCACTAAATACCCCCACATAAAGGGTCATTC
TAAAGAGTCGCCTTTTGCTTCGCTGTTTCCTCTTTGTCTAACACATGACG
CCCCATTACTATGTATGCACACTTAGGCCCTGATCATCTCGCAGCGCTCT
TGCCTCGGTGCATCGGCAAGCGATGGTATCAAGCTTTGCGCATCGGCGCG
GTCTGGGGGTTAGGCCATGGGATCAGCGCCATTATCATGGGCATGGTTGC
ATTTTTCCTAAAGGGCAGATTATCGTCTTACTCACATAGCACACTCATAC
CAAAGTTATCGTTGTATACTGAGGTGTTAATCGGCGTAAGTTTGATTATC
ATTGGCTTGTTGGGCTTGAAGGAGGCGGCAAGTTTTGAAGCGCCTGCTGT
GGTGACTGAACTGGACGAGACGACGGCCGTGGCGAGCTCGTCGGGAACAC
TCAAAAAGGTGAGCTAAGAAAATTAAGCTGTGGCAATGATGGTTGGACAA
GGAAGGTAAATTCTAAGGGTACAATGACTGACGGTCCTGCCTCTGGTTCT
TTTTCTTAACATCAACAGGAGGCCTCGAGCAAGGCTATCTTCCTCAATGG
GCTCCTGCATGGTTTTTCTTGGGACGGCACGCCTACTCTGGCACCTGCAT
TAGCGTTTGATTCGTGGTTTCCCGTTATTACCTTCCTATGCTCCTATGGA
TTGGGCACGATGCTTTCCATGAGCACGGCCACTTGTTTGATTGGCGAGGG
CACGATCAAGGTCGGACAGGCTTTTGACAGACCCAACATTCCCAAGACGC
TTGCGCAAGGGTCTTCGGTCGTGGCGATCATAGTTGGAATGGTCTGGACG
TTCAAGGGGTTGGTTTAAATGCGGGTAAAATTAAGGCAGAGGTGTGGAGC
AGAGAGGGAAGGGGATATGGGAACTAGAAAAAAAGCAAACTAGCGCAATT
TTGCTTGACGGTATACATACACAATAACAAAACGGACGACCTGAACGAAG
AATGTGACCGCAAAAGAAAGAACCGACACTTAACCATGA
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Coding sequence (CDS) from alignment at scaffold_7:787824..789312-

>mRNA_3150 ID=mRNA_3150|Name=jgi.p|Nanoce1779_2|584736|organism=Nannochloropsis oceanica|type=CDS|length=3015bp|location=Sequence derived from alignment at scaffold_7:787824..789312- (Nannochloropsis oceanica)
GAGGCCTCGAGCAAGGCTATCTTCCTCAATGGGCTCCTGCATGGTTTTTC
TTGGGACGGCACGCCTACTCTGGCACCTGCATTAGCGTTTGATTCGTGGT
TTCCCGTTATTACCTTCCTATGCTCCTATGGATTGGGCACGATGCTTTCC
ATGAGCACGGCCACTTGTTTGATTGGCGAGGGCACGATCAAGGTCGGACA
GGCTTTTGACAGACCCAACATTCCCAAGACGCTTGCGCAAGGGTCTTCGG
TCGTGGCGATCATAGTTGGAATGGTCTGGACGTTCAAGGGGTTGGTTTAA
GCCCTGATCATCTCGCAGCGCTCTTGCCTCGGTGCATCGGCAAGCGATGG
TATCAAGCTTTGCGCATCGGCGCGGTCTGGGGGTTAGGCCATGGGATCAG
CGCCATTATCATGGGCATGGTTGCATTTTTCCTAAAGGGCAGATTATCGT
CTTACTCACATAGCACACTCATACCAAAGTTATCGTTGTATACTGAGGTG
TTAATCGGCGTAAGTTTGATTATCATTGGCTTGTTGGGCTTGAAGGAGGC
GGCAAGTTTTGAAGCGCCTGCTGTGGTGACTGAACTGGACGAGACGACGG
CCGTGGCGAGCTCGTCGGGAACACTCAAAAAGATGCAAAGAATAATACCG
GCCAAGATGCGGCGGTCATCATCATTCTCCGTGGCGCTTTCCTGTCTTCT
AGCTCTGCCTATGATTGCCATGCCCTATGCCTCAGCCTTCGTCCGCCCGC
CTACCCGCCTGGAAGCAGCGAGCTTGAGACGGCAGCCCCACACAATTAGC
AAAATCTTGGAACCCTCCCCCTTTACACGTTTGCGGGCCCCTGCTGCTGC
TGCCGCTGCGCCCACTGTACCTGCTGGTGCCTCGGGAAATGGTCTAGTGT
CCCGCCTCAAAAGCATGGCCAAAAACGTGGTCACGGGCCTCCCTGTTGTA
GCCCTTTCTACCATTTCGGGCGGTTTCTTGGCGGGTTCATTGCACTCCGT
CACGGGAGGCCTCGAGCAAGGCTATCTTCCTCAATGGGCTCCTGCATGGT
TTTTCTTGGGACGGCACGCCTACTCTGGCACCTGCATTAGCGTTTGATTC
GTGGTTTCCCGTTATTACCTTCCTATGCTCCTATGGATTGGGCACGATGC
TTTCCATGAGCACGGCCACTTGTTTGATTGGCGAGGGCACGATCAAGGTC
GGACAGGCTTTTGACAGACCCAACATTCCCAAGACGCTTGCGCAAGGGTC
TTCGGTCGTGGCGATCATAGTTGGAATGGTCTGGACGTTCAAGGGGTTGG
TTTAAGCCCTGATCATCTCGCAGCGCTCTTGCCTCGGTGCATCGGCAAGC
GATGGTATCAAGCTTTGCGCATCGGCGCGGTCTGGGGGTTAGGCCATGGG
ATCAGCGCCATTATCATGGGCATGGTTGCATTTTTCCTAAAGGGCAGATT
ATCGTCTTACTCACATAGCACACTCATACCAAAGTTATCGTTGTATACTG
AGGTGTTAATCGGCGTAAGTTTGATTATCATTGGCTTGTTGGGCTTGAAG
GAGGCGGCAAGTTTTGAAGCGCCTGCTGTGGTGACTGAACTGGACGAGAC
GACGGCCGTGGCGAGCTCGTCGGGAACACTCAAAAAGATGCAAAGAATAA
TACCGGCCAAGATGCGGCGGTCATCATCATTCTCCGTGGCGCTTTCCTGT
CTTCTAGCTCTGCCTATGATTGCCATGCCCTATGCCTCAGCCTTCGTCCG
CCCGCCTACCCGCCTGGAAGCAGCGAGCTTGAGACGGCAGCCCCACACAA
TTAGCAAAATCTTGGAACCCTCCCCCTTTACACGTTTGCGGGCCCCTGCT
GCTGCTGCCGCTGCGCCCACTGTACCTGCTGGTGCCTCGGGAAATGGTCT
AGTGTCCCGCCTCAAAAGCATGGCCAAAAACGTGGTCACGGGCCTCCCTG
TTGTAGCCCTTTCTACCATTTCGGGCGGTTTCTTGGCGGGTTCATTGCAC
TCCGTCACGGGAGGCCTCGAGCAAGGCTATCTTCCTCAATGGGCTCCTGC
ATGGTTTTTCTTGGGACGGCACGCCTACTCTGGCACCTGCATTAGCGTTT
GATTCGTGGTTTCCCGTTATTACCTTCCTATGCTCCTATGGATTGGGCAC
GATGCTTTCCATGAGCACGGCCACTTGTTTGATTGGCGAGGGCACGATCA
AGGTCGGACAGGCTTTTGACAGACCCAACATTCCCAAGACGCTTGCGCAA
GGGTCTTCGGTCGTGGCGATCATAGTTGGAATGGTCTGGACGTTCAAGGG
GTTGGTTTAAGCCCTGATCATCTCGCAGCGCTCTTGCCTCGGTGCATCGG
CAAGCGATGGTATCAAGCTTTGCGCATCGGCGCGGTCTGGGGGTTAGGCC
ATGGGATCAGCGCCATTATCATGGGCATGGTTGCATTTTTCCTAAAGGGC
AGATTATCGTCTTACTCACATAGCACACTCATACCAAAGTTATCGTTGTA
TACTGAGGTGTTAATCGGCGTAAGTTTGATTATCATTGGCTTGTTGGGCT
TGAAGGAGGCGGCAAGTTTTGAAGCGCCTGCTGTGGTGACTGAACTGGAC
GAGACGACGGCCGTGGCGAGCTCGTCGGGAACACTCAAAAAGATGCAAAG
AATAATACCGGCCAAGATGCGGCGGTCATCATCATTCTCCGTGGCGCTTT
CCTGTCTTCTAGCTCTGCCTATGATTGCCATGCCCTATGCCTCAGCCTTC
GTCCGCCCGCCTACCCGCCTGGAAGCAGCGAGCTTGAGACGGCAGCCCCA
CACAATTAGCAAAATCTTGGAACCCTCCCCCTTTACACGTTTGCGGGCCC
CTGCTGCTGCTGCCGCTGCGCCCACTGTACCTGCTGGTGCCTCGGGAAAT
GGTCTAGTGTCCCGCCTCAAAAGCATGGCCAAAAACGTGGTCACGGGCCT
CCCTGTTGTAGCCCTTTCTACCATTTCGGGCGGTTTCTTGGCGGGTTCAT
TGCACTCCGTCACGG
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Synonyms
Publications