jgi.p|Nanoce1779_2|668370, mRNA_315 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668370
Unique NamemRNA_315
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1148
Alignment locationscaffold_3:779787..781558 -

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Properties
Property NameValue
TranscriptId668456
TrackFilteredModels2
ProteinId668370
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:779787..781558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668370gene_315Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668370mRNA_315-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_315CDS_315Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_315 ID=mRNA_315|Name=jgi.p|Nanoce1779_2|668370|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
CAGACAGCGCAAAGCACTTCAACATTCCGACAATGGGCGCGGTAGAATCC
CCCCGCCAACTGGTGGGAGCGGCCATTCAAGAGTTTTTCGGTGCCCTACT
GATGTTTCTGATCCTCTGGCCGTTTGTGGGCGTCTTTGGCAACACATGGA
CGGCCTGGCTGGCCCACTTCTTCTTCGTCATGCTGTGCGACGTCGTCTCC
GGTGGCTCCCAAGTCAACCCCAGTGTTTCCGTCGCCATGTTCGTGCACGG
AGCTATATCATTCCCTGGGGCCATCGTGCGTATCCTTGCCCAGCTTGCTG
CGGGCATAATTGCCTATCCTTTGCTTCAAAAGCTGAGCCCGAGCTACGTC
GGTGTGGGGGGACCAGGCCTCCAAGATGGGATCAGCACGACTACGGGGGC
ACTGGCCGAATTTACATTAACGTTTGGATTGTTGACATTGATTTATTTGG
CCATCACAATTGTTGGCGCGCCAGGGCAGCGCCCCGTCATTGCGGCGGGC
ATCCGCGGCTTGGTAGTGGCAGGCGGATCTTACACAGGACCAGCAATGAA
CCCCATGATTGCGTTTGGGTGGGCCGTGCAGAGCGGGGCCTACAAGAATT
TCGACCACTACCTGGTTTATTGGATTGCCCCGACCGTGGGCGCCGTTTTG
GCCACGGTACTGTTCGCCGTCTTCCAAGCGTCCTTCCTGGACGACGGGGA
GAAGAAGAGCAAAAGCGACTGAAGATGAACAGGATACAGAGGTAAAAAGA
GGAAAGACGGTGATGAGTAGTCAGGCGCTGAAACAAGGCGTGGAAGAGGC
AAAGCAAAAGGAAAGGAGGGAATAAGGCAGGCTGGAGCGACACCCTCAAG
ACAACAGCCAGAAAACTACATACACCGATCTGAAAAGAGGGGTTAAAAGA
TAGAAACAAGAAAGAAAAAGGGACTCACAAATAAGTTGCATTTTTCCTCC
CATTTTTTGGTTTCCAAGAACACGGCTGGAGGTGGGAGGTATATTTAACA
CATAGAGCTGCACGAGCCTCGAGATGGTTCAAGTGCATAAGACGCTAGCT
ACTGCCCTGTCTATGGAAGGGATCATTCTCTCCACGGTCAGTGTCGTCAG
TGTCGGCAAGCTTCGGCATGGTCCATTAAAAGCCCCTGTTGAGGGTGT
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protein sequence of jgi.p|Nanoce1779_2|668370

>mRNA_315-protein ID=mRNA_315-protein|Name=jgi.p|Nanoce1779_2|668370|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MGAVESPRQLVGAAIQEFFGALLMFLILWPFVGVFGNTWTAWLAHFFFVM
LCDVVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGIIAYPLLQK
LSPSYVGVGGPGLQDGISTTTGALAEFTLTFGLLTLIYLAITIVGAPGQR
PVIAAGIRGLVVAGGSYTGPAMNPMIAFGWAVQSGAYKNFDHYLVYWIAP
TVGAVLATVLFAVFQASFLDDGEKKSKSD*
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mRNA from alignment at scaffold_3:779787..781558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_315 ID=mRNA_315|Name=jgi.p|Nanoce1779_2|668370|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at scaffold_3:779787..781558- (Nannochloropsis oceanica)
CAGACAGCGCAAAGCACTTCAACATTCCGACAATGGGCGCGGTAGAATCC
CCCCGCCAACTGGTGGGAGCGGCCATTCAAGAGTTTTTCGGTGCCCTACT
GATGTTTCTGATCCTCTGGCCGTTTGTGGGCGTCTTTGGCAACACATGGA
CGGCCTGGCTGGCCCACTTCTTCTTCGTCATGCTGGTGAGGCAGGGAAGA
GGAGGGTGGGATGTTGAGGGTGGAATGGGTGAAGAGGGAAAGAGGAGGAG
AGTAGTCTAGTGCAATGAGTGATCTTGATGGGATGGGACGAATCACATGT
CTTGGATTTGTCTTGCGCGGCGTGTAAGAATTGCCCACTTCTTACGCGAT
GCCCACCCGTCCCACCAACACCGACTAGTGCGACGTCGTCTCCGGTGGCT
CCCAAGTCAACCCCAGTGTTTCCGTCGCCATGTTCGTGCACGGAGCTATA
TCATTCCCTGGGGCCATCGTGCGTATCCTTGCCCAGCTTGCTGCGGGCAT
AATTGCCTATCCTTTGCTTCAAAAGCTGAGCCCGAGCTACGTCGGTGTGG
GGGGACCAGGCCTCCAAGATGGGATCAGCACGACTACGGGGGCACTGGCC
GAATTTACATTAACGTTTGGATTGTTGACATTGATTTATTTGGCCATCAC
AATTGTTGGCGCGCCAGGGCAGGTGGGTGATGGTGGCGGTCGGTCGGTGT
GGTGGTTTGGGAGAGGAATGGAAGGCGTAGGAGTGACGGAAGAAAGGTGC
TGGTATATGGTCCATGGTTTGAGAAAGAAACGAGAAAGAGAGAAAGAAAA
ACAATCTGCTCCTATACAATGGGAGCGGTTCACCGAAACGTTAAGTTTAT
GTGCAGATCTTCAGGAACAGTTTTGATCCTACCTTTCTCACGACACGAAC
GCATGCATACACACACATGAACAAAAACACAGCGCCCCGTCATTGCGGCG
GGCATCCGCGGCTTGGTAGTGGCAGGCGGATCTTACACAGGACCAGCAAT
GAACCCCATGATTGCGTTTGGGTGGGCCGTGCAGAGCGGGGCCTACAAGG
TATGGGCTTGTGACTCCTCATGTGCTGCTTTTTGTGGCAGTGACGATTTT
TCAACAGTTTTTATGCATGTCACACTACCCCCCCTGCTCCTTCCGGTCTT
ATTTGTATGTATGTATGGTTACTCACATTCTTCGCAAATTTTGCCTTCTT
TTTTTATTCTTTGCACTCAGAATTTCGACCACTACCTGGTTTATTGGATT
GCCCCGACCGTGGGCGCCGTTTTGGCCACGGTACTGTTCGCCGTCTTCCA
AGCGTCCTTCCTGGACGACGGGGAGAAGAAGAGCAAAAGCGACTGAAGAT
GAACAGGATACAGAGGTAAAAAGAGGAAAGACGGTGATGAGTAGTCAGGC
GCTGAAACAAGGCGTGGAAGAGGCAAAGCAAAAGGAAAGGAGGGAATAAG
GCAGGCTGGAGCGACACCCTCAAGACAACAGCCAGAAAACTACATACACC
GATCTGAAAAGAGGGGTTAAAAGATAGAAACAAGAAAGAAAAAGGGACTC
ACAAATAAGTTGCATTTTTCCTCCCATTTTTTGGTTTCCAAGAACACGGC
TGGAGGTGGGAGGTATATTTAACACATAGAGCTGCACGAGCCTCGAGATG
GTTCAAGTGCATAAGACGCTAGCTACTGCCCTGTCTATGGAAGGGATCAT
TCTCTCCACGGTCAGTGTCGTCAGTGTCGGCAAGCTTCGGCATGGTCCAT
TAAAAGCCCCTGTTGAGGGTGT
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Coding sequence (CDS) from alignment at scaffold_3:779787..781558-

>mRNA_315 ID=mRNA_315|Name=jgi.p|Nanoce1779_2|668370|organism=Nannochloropsis oceanica|type=CDS|length=2760bp|location=Sequence derived from alignment at scaffold_3:779787..781558- (Nannochloropsis oceanica)
AATTTCGACCACTACCTGGTTTATTGGATTGCCCCGACCGTGGGCGCCGT
TTTGGCCACGGTACTGTTCGCCGTCTTCCAAGCGTCCTTCCTGGACGACG
GGGAGAAGAAGAGCAAAAGCGACTGACGCCCCGTCATTGCGGCGGGCATC
CGCGGCTTGGTAGTGGCAGGCGGATCTTACACAGGACCAGCAATGAACCC
CATGATTGCGTTTGGGTGGGCCGTGCAGAGCGGGGCCTACAAGTGCGACG
TCGTCTCCGGTGGCTCCCAAGTCAACCCCAGTGTTTCCGTCGCCATGTTC
GTGCACGGAGCTATATCATTCCCTGGGGCCATCGTGCGTATCCTTGCCCA
GCTTGCTGCGGGCATAATTGCCTATCCTTTGCTTCAAAAGCTGAGCCCGA
GCTACGTCGGTGTGGGGGGACCAGGCCTCCAAGATGGGATCAGCACGACT
ACGGGGGCACTGGCCGAATTTACATTAACGTTTGGATTGTTGACATTGAT
TTATTTGGCCATCACAATTGTTGGCGCGCCAGGGCAGATGGGCGCGGTAG
AATCCCCCCGCCAACTGGTGGGAGCGGCCATTCAAGAGTTTTTCGGTGCC
CTACTGATGTTTCTGATCCTCTGGCCGTTTGTGGGCGTCTTTGGCAACAC
ATGGACGGCCTGGCTGGCCCACTTCTTCTTCGTCATGCTGAATTTCGACC
ACTACCTGGTTTATTGGATTGCCCCGACCGTGGGCGCCGTTTTGGCCACG
GTACTGTTCGCCGTCTTCCAAGCGTCCTTCCTGGACGACGGGGAGAAGAA
GAGCAAAAGCGACTGACGCCCCGTCATTGCGGCGGGCATCCGCGGCTTGG
TAGTGGCAGGCGGATCTTACACAGGACCAGCAATGAACCCCATGATTGCG
TTTGGGTGGGCCGTGCAGAGCGGGGCCTACAAGTGCGACGTCGTCTCCGG
TGGCTCCCAAGTCAACCCCAGTGTTTCCGTCGCCATGTTCGTGCACGGAG
CTATATCATTCCCTGGGGCCATCGTGCGTATCCTTGCCCAGCTTGCTGCG
GGCATAATTGCCTATCCTTTGCTTCAAAAGCTGAGCCCGAGCTACGTCGG
TGTGGGGGGACCAGGCCTCCAAGATGGGATCAGCACGACTACGGGGGCAC
TGGCCGAATTTACATTAACGTTTGGATTGTTGACATTGATTTATTTGGCC
ATCACAATTGTTGGCGCGCCAGGGCAGATGGGCGCGGTAGAATCCCCCCG
CCAACTGGTGGGAGCGGCCATTCAAGAGTTTTTCGGTGCCCTACTGATGT
TTCTGATCCTCTGGCCGTTTGTGGGCGTCTTTGGCAACACATGGACGGCC
TGGCTGGCCCACTTCTTCTTCGTCATGCTGAATTTCGACCACTACCTGGT
TTATTGGATTGCCCCGACCGTGGGCGCCGTTTTGGCCACGGTACTGTTCG
CCGTCTTCCAAGCGTCCTTCCTGGACGACGGGGAGAAGAAGAGCAAAAGC
GACTGACGCCCCGTCATTGCGGCGGGCATCCGCGGCTTGGTAGTGGCAGG
CGGATCTTACACAGGACCAGCAATGAACCCCATGATTGCGTTTGGGTGGG
CCGTGCAGAGCGGGGCCTACAAGTGCGACGTCGTCTCCGGTGGCTCCCAA
GTCAACCCCAGTGTTTCCGTCGCCATGTTCGTGCACGGAGCTATATCATT
CCCTGGGGCCATCGTGCGTATCCTTGCCCAGCTTGCTGCGGGCATAATTG
CCTATCCTTTGCTTCAAAAGCTGAGCCCGAGCTACGTCGGTGTGGGGGGA
CCAGGCCTCCAAGATGGGATCAGCACGACTACGGGGGCACTGGCCGAATT
TACATTAACGTTTGGATTGTTGACATTGATTTATTTGGCCATCACAATTG
TTGGCGCGCCAGGGCAGATGGGCGCGGTAGAATCCCCCCGCCAACTGGTG
GGAGCGGCCATTCAAGAGTTTTTCGGTGCCCTACTGATGTTTCTGATCCT
CTGGCCGTTTGTGGGCGTCTTTGGCAACACATGGACGGCCTGGCTGGCCC
ACTTCTTCTTCGTCATGCTGAATTTCGACCACTACCTGGTTTATTGGATT
GCCCCGACCGTGGGCGCCGTTTTGGCCACGGTACTGTTCGCCGTCTTCCA
AGCGTCCTTCCTGGACGACGGGGAGAAGAAGAGCAAAAGCGACTGACGCC
CCGTCATTGCGGCGGGCATCCGCGGCTTGGTAGTGGCAGGCGGATCTTAC
ACAGGACCAGCAATGAACCCCATGATTGCGTTTGGGTGGGCCGTGCAGAG
CGGGGCCTACAAGTGCGACGTCGTCTCCGGTGGCTCCCAAGTCAACCCCA
GTGTTTCCGTCGCCATGTTCGTGCACGGAGCTATATCATTCCCTGGGGCC
ATCGTGCGTATCCTTGCCCAGCTTGCTGCGGGCATAATTGCCTATCCTTT
GCTTCAAAAGCTGAGCCCGAGCTACGTCGGTGTGGGGGGACCAGGCCTCC
AAGATGGGATCAGCACGACTACGGGGGCACTGGCCGAATTTACATTAACG
TTTGGATTGTTGACATTGATTTATTTGGCCATCACAATTGTTGGCGCGCC
AGGGCAGATGGGCGCGGTAGAATCCCCCCGCCAACTGGTGGGAGCGGCCA
TTCAAGAGTTTTTCGGTGCCCTACTGATGTTTCTGATCCTCTGGCCGTTT
GTGGGCGTCTTTGGCAACACATGGACGGCCTGGCTGGCCCACTTCTTCTT
CGTCATGCTG
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Synonyms
Publications