jgi.p|Nanoce1779_2|553706, mRNA_3145 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553706
Unique Name	mRNA_3145
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1926
Alignment location	scaffold_7:766680..768830 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553792
Track	FilteredModels2
ProteinId	553706

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:766680..768830 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553706	gene_3145	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553706	mRNA_3145-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3145	CDS_3145	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:766680..768830-
coding sequence from alignment at scaffold_7:766680..768830-

mRNA sequence

>mRNA_3145 ID=mRNA_3145|Name=jgi.p|Nanoce1779_2|553706|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp
ATGCCGCCACCACGTCCCCTCGCACATCTCTCACCGTGGCCCCTGCCCAC
CCACGCGGCCGTCTTTGGCCTCACCTTCTTCGTATGGGCCTCTGTTCATG
CGGGACGCAAGTCCTACTCCATCATCAAGCCGATACTGGTCTCCAACAGC
TGGTTCGGCACGGACACGGCTGTCAAAGTGTCGTGGGCTGACACCAGCTT
CTTTCTCTTTTATGCAGTTGGATGCGGCTTCGGCAAGATCAGTGATTCCA
AAGACCCACGTCTTGTCATAACTATCTCCCTACTTATGGCCGCTGCGTTG
CTCGTCTGCTTCGGTCTAGGTGATTTTTTTGACATCCACAGTGTTGTAGC
ATTTTGCCTCTTGTGGGGAATGCAAGCTTTTGCCCAAGCACTCGTCTGGC
CCGGGTGCATTGCCGTCTTGGGAGAATGGTTCCCTTACAAACGTCGAGCA
GCCGTGATGGGCTTGTGGTGTTGTGCCAATAATATCGGGAATCTCCTAGG
GACGAGTGTCGGAGAGGTGGCTATGGTGGCTGCGGCAGAAAAGCGATGGG
GAGCTGTCATGATGGCGAATGCGTTGTTAATGCTCATGGCGCCGGTGCTG
GTATTTCTTCATCTCACGCCTTTGCCGCCGCCGGGGATGAATTCGAAGAG
GCAAGAAAAACTGTCCCACCACCGCACACACCTCCTCCCACCCATCACCC
TGACGCGTGCCTTCCTTACCCCAGGCGTTCTCGAAGTGAGTCTCTCCTAC
GCCTGCCTCAAAGGTTGTGCATACGCATTCACCTTCTGGTTGCCCACCCT
GCTCTCCTCCGGTGGCTGGGGCCTCAGTACAAAGCAGTCCAACTTTTTTG
CGATGCTTTTTGATTTCGGTTGCATCGCCGGTTCGATTTCTATTGGCGCT
CTCGCCACATGGACACGCCGACCCATTTTTGTCTATACCTTGAGTATATT
GGCTTCGGCATTGCCGACGTACCTGATGGGGATCCTCCCTGAAGGAGGAG
GGGGAGAGTTGGGTGTAACGGGTCTGTTTCTCGTGTTGGTTGGCTTTTTG
CTGTCGGCGCCGCAGTATTTGTTGGTGACATCGGTGGCACAGGACTTGGG
GCAGAGTCATGGATTGAAGGGGAACGCAAGGGCCATTGCGACAATGACGG
GTGTGATTGATGGGATTGGAAGTTTGGGGGCAGCGATCGTGCAGGTGTTG
GTGGGGAACTTGGCGTCGTGTAGTCGGGAGGAGGGTGAGGGGCAGGGAGG
AGGAGGAGGGGAGGGCGAGGTCGAAACGATGACGACGTGTGACTTGCCGA
ATGTGTTTAATATGTTGGCGTGTGGGAGTTTGGTGGGGGCGCTGGCCTTG
TCGCGGTTGGCGTGGCGGGAAATAAGGGATGCTGGAAGGGGGAGGTAGGA
GGGCTTGAGATCATGAGGGTTTGAAGATAAGGAGTTGCAAGTAAAGTGGA
GGAAGGGCGTGAAAAATTGTGCGAGAAAGCCCGGTGCAGGCGACTGACAG
GGGTAACGAGGCTCATTTTGACTTGGGGGTGAAGGTGTTGCCGGAGGGTG
ACCATCATAGGGAATCAGTGACCGAGGTAAGAGCCGCTGTCAAAAAATGT
TGTTTCCCCTTTTTGCCTAGGTGTCGATGTACATAAAAGGGAAATAGAAA
AGTGTATAAACATATTAGTAGAAAAAGTGGAGGGGCACCGGAAACTGATT
TGACGTCTTCCAACCCCAACCAAGAGGCACATTATTCAATACACATAATG
ATCAAAGCACTCTACAATGACAACGAAGAATGTAAACCTGCACACGCATT
AAATGAAGCGCATTCAAACCCATTCCTCGGGCATGTATTCGTTTGCGGGT
ACAGGTTGCACGCTATAGTTTTAGGGTTGTAGGAAACTACATACATGGCA
TGGTCCAGACAGCTGTCATTCGCCAG

protein sequence of jgi.p|Nanoce1779_2|553706

>mRNA_3145-protein ID=mRNA_3145-protein|Name=jgi.p|Nanoce1779_2|553706|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MPPPRPLAHLSPWPLPTHAAVFGLTFFVWASVHAGRKSYSIIKPILVSNS
WFGTDTAVKVSWADTSFFLFYAVGCGFGKISDSKDPRLVITISLLMAAAL
LVCFGLGDFFDIHSVVAFCLLWGMQAFAQALVWPGCIAVLGEWFPYKRRA
AVMGLWCCANNIGNLLGTSVGEVAMVAAAEKRWGAVMMANALLMLMAPVL
VFLHLTPLPPPGMNSKRQEKLSHHRTHLLPPITLTRAFLTPGVLEVSLSY
ACLKGCAYAFTFWLPTLLSSGGWGLSTKQSNFFAMLFDFGCIAGSISIGA
LATWTRRPIFVYTLSILASALPTYLMGILPEGGGGELGVTGLFLVLVGFL
LSAPQYLLVTSVAQDLGQSHGLKGNARAIATMTGVIDGIGSLGAAIVQVL
VGNLASCSREEGEGQGGGGGEGEVETMTTCDLPNVFNMLACGSLVGALAL
SRLAWREIRDAGRGR*

mRNA from alignment at scaffold_7:766680..768830-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3145 ID=mRNA_3145|Name=jgi.p|Nanoce1779_2|553706|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at scaffold_7:766680..768830- (Nannochloropsis oceanica)
ATGCCGCCACCACGTCCCCTCGCACATCTCTCACCGTGGCCCCTGCCCAC
CCACGCGGCCGTCTTTGGCCTCACCTTCTTCGTATGGGCCTCTGTTCATG
CGGGACGCAAGTCCTACTCCATCATCAAGCCGATACTGGTCTCCAACAGC
TGGTTCGGCACGGACACGGCTGTCAAAGTGTCGTGGGCTGACACCAGCTT
CTTTCTCTTTTATGCAGTTGGATGCGGCTTCGGCAAGATCAGTGATTCCA
AAGACCCACGTCTTGTCATAACTATCTCCCTACTTATGGCCGCTGCGTTG
CTCGTCTGCTTCGGTCTAGGTGATTTTTTTGACATCCACAGTGTTGTAGC
ATTTTGCCTCTTGTGGGGAATGCAAGCTTTTGCCCAAGCACTCGTCTGGC
CCGGGTGCATTGCCGTCTTGGGAGAATGGTTCCCTTACAAACGTCGAGCA
GCCGTGATGGGCTTGTGGTGTTGTGCCAATAATATCGGGAATCTCCTAGG
GACGAGTGTCGGAGAGGTGGCTATGGTGGCTGCGGCAGAAAAGCGATGGG
GAGCTGTCATGATGGCGAATGCGTTGTTAATGCTCATGGCGCCGGTGCTG
GTATTTCTTCATCTCACGCCTTTGCCGCCGCCGGGGATGAATTCGAAGAG
GCAAGGTTTAGCCGAAAAAGAAAGAGAGGAGGATGAGGTTGGAGATGGAC
AGATAAAAGAGGAGGGAACTGATTGGCTCTATCACCAACTTGAAGACAAT
GAGGACGGCGTCGTCGCAGTGACTTCATTGGGGGAAACCCCAATGGTGCA
ACACGATGCCCATTCTTTGTTTCCTCACGCCAATGACGACAGCAGCCGCG
ACAACAGCAGTCCTCTCGTCCTCCCTCTAGAAAAACTGTCCCACCACCGC
ACACACCTCCTCCCACCCATCACCCTGACGCGTGCCTTCCTTACCCCAGG
CGTTCTCGAAGTGAGTCTCTCCTACGCCTGCCTCAAAGGTTGTGCATACG
CATTCACCTTCTGGTTGCCCACCCTGCTCTCCTCCGGTGGCTGGGGCCTC
AGTACAAAGCAGTCCAACTTTTTTGCGATGCTTTTTGATTTCGGTTGCAT
CGCCGGTTCGATTTCTATTGGCGCTCTCGCCACATGGACACGCCGACCCA
TTTTTGTCTATACCTTGAGTATATTGGCTTCGGCATTGCCGACGTACCTG
ATGGGGATCCTCCCTGAAGGAGGAGGGGGAGAGTTGGGTGTAACGGGTCT
GTTTCTCGTGTTGGTTGGCTTTTTGCTGTCGGCGCCGCAGTATTTGTTGG
TGACATCGGTGGCACAGGACTTGGGGCAGAGTCATGGATTGAAGGGGAAC
GCAAGGGCCATTGCGACAATGACGGGTGTGATTGATGGGATTGGAAGTTT
GGGGGCAGCGATCGTGCAGGTGTTGGTGGGGAACTTGGCGTCGTGTAGTC
GGGAGGAGGGTGAGGGGCAGGGAGGAGGAGGAGGGGAGGGCGAGGTCGAA
ACGATGACGACGTGTGACTTGCCGAATGTGTTTAATATGTTGGCGTGTGG
GAGTTTGGTGGGGGCGCTGGCCTTGTCGCGGTTGGCGTGGCGGGAAATAA
GGGATGCTGGAAGGGGGAGGTAGGAGGGCTTGAGATCATGAGGGTTTGAA
GATAAGGAGTTGCAAGTAAAGTGGAGGAAGGGCGTGAAAAATTGTGCGAG
AAAGCCCGGTGCAGGCGACTGACAGGGGTAACGAGGCTCATTTTGACTTG
GGGGTGAAGGTGTTGCCGGAGGGTGACCATCATAGGGAATCAGTGACCGA
GGTAAGAGCCGCTGTCAAAAAATGTTGTTTCCCCTTTTTGCCTAGGTGTC
GATGTACATAAAAGGGAAATAGAAAAGTGTATAAACATATTAGTAGAAAA
AGTGGAGGGGCACCGGAAACTGATTTGACGTCTTCCAACCCCAACCAAGA
GGCACATTATTCAATACACATAATGATCAAAGCACTCTACAATGACAACG
AAGAATGTAAACCTGCACACGCATTAAATGAAGCGCATTCAAACCCATTC
CTCGGGCATGTATTCGTTTGCGGGTACAGGTTGCACGCTATAGTTTTAGG
GTTGTAGGAAACTACATACATGGCATGGTCCAGACAGCTGTCATTCGCCA
G

Coding sequence (CDS) from alignment at scaffold_7:766680..768830-

>mRNA_3145 ID=mRNA_3145|Name=jgi.p|Nanoce1779_2|553706|organism=Nannochloropsis oceanica|type=CDS|length=2796bp|location=Sequence derived from alignment at scaffold_7:766680..768830- (Nannochloropsis oceanica)
AAAAACTGTCCCACCACCGCACACACCTCCTCCCACCCATCACCCTGACG
CGTGCCTTCCTTACCCCAGGCGTTCTCGAAGTGAGTCTCTCCTACGCCTG
CCTCAAAGGTTGTGCATACGCATTCACCTTCTGGTTGCCCACCCTGCTCT
CCTCCGGTGGCTGGGGCCTCAGTACAAAGCAGTCCAACTTTTTTGCGATG
CTTTTTGATTTCGGTTGCATCGCCGGTTCGATTTCTATTGGCGCTCTCGC
CACATGGACACGCCGACCCATTTTTGTCTATACCTTGAGTATATTGGCTT
CGGCATTGCCGACGTACCTGATGGGGATCCTCCCTGAAGGAGGAGGGGGA
GAGTTGGGTGTAACGGGTCTGTTTCTCGTGTTGGTTGGCTTTTTGCTGTC
GGCGCCGCAGTATTTGTTGGTGACATCGGTGGCACAGGACTTGGGGCAGA
GTCATGGATTGAAGGGGAACGCAAGGGCCATTGCGACAATGACGGGTGTG
ATTGATGGGATTGGAAGTTTGGGGGCAGCGATCGTGCAGGTGTTGGTGGG
GAACTTGGCGTCGTGTAGTCGGGAGGAGGGTGAGGGGCAGGGAGGAGGAG
GAGGGGAGGGCGAGGTCGAAACGATGACGACGTGTGACTTGCCGAATGTG
TTTAATATGTTGGCGTGTGGGAGTTTGGTGGGGGCGCTGGCCTTGTCGCG
GTTGGCGTGGCGGGAAATAAGGGATGCTGGAAGGGGGAGGTAGATGCCGC
CACCACGTCCCCTCGCACATCTCTCACCGTGGCCCCTGCCCACCCACGCG
GCCGTCTTTGGCCTCACCTTCTTCGTATGGGCCTCTGTTCATGCGGGACG
CAAGTCCTACTCCATCATCAAGCCGATACTGGTCTCCAACAGCTGGTTCG
GCACGGACACGGCTGTCAAAGTGTCGTGGGCTGACACCAGCTTCTTTCTC
TTTTATGCAGTTGGATGCGGCTTCGGCAAGATCAGTGATTCCAAAGACCC
ACGTCTTGTCATAACTATCTCCCTACTTATGGCCGCTGCGTTGCTCGTCT
GCTTCGGTCTAGGTGATTTTTTTGACATCCACAGTGTTGTAGCATTTTGC
CTCTTGTGGGGAATGCAAGCTTTTGCCCAAGCACTCGTCTGGCCCGGGTG
CATTGCCGTCTTGGGAGAATGGTTCCCTTACAAACGTCGAGCAGCCGTGA
TGGGCTTGTGGTGTTGTGCCAATAATATCGGGAATCTCCTAGGGACGAGT
GTCGGAGAGGTGGCTATGGTGGCTGCGGCAGAAAAGCGATGGGGAGCTGT
CATGATGGCGAATGCGTTGTTAATGCTCATGGCGCCGGTGCTGGTATTTC
TTCATCTCACGCCTTTGCCGCCGCCGGGGATGAATTCGAAGAGGCAAGAA
AAACTGTCCCACCACCGCACACACCTCCTCCCACCCATCACCCTGACGCG
TGCCTTCCTTACCCCAGGCGTTCTCGAAGTGAGTCTCTCCTACGCCTGCC
TCAAAGGTTGTGCATACGCATTCACCTTCTGGTTGCCCACCCTGCTCTCC
TCCGGTGGCTGGGGCCTCAGTACAAAGCAGTCCAACTTTTTTGCGATGCT
TTTTGATTTCGGTTGCATCGCCGGTTCGATTTCTATTGGCGCTCTCGCCA
CATGGACACGCCGACCCATTTTTGTCTATACCTTGAGTATATTGGCTTCG
GCATTGCCGACGTACCTGATGGGGATCCTCCCTGAAGGAGGAGGGGGAGA
GTTGGGTGTAACGGGTCTGTTTCTCGTGTTGGTTGGCTTTTTGCTGTCGG
CGCCGCAGTATTTGTTGGTGACATCGGTGGCACAGGACTTGGGGCAGAGT
CATGGATTGAAGGGGAACGCAAGGGCCATTGCGACAATGACGGGTGTGAT
TGATGGGATTGGAAGTTTGGGGGCAGCGATCGTGCAGGTGTTGGTGGGGA
ACTTGGCGTCGTGTAGTCGGGAGGAGGGTGAGGGGCAGGGAGGAGGAGGA
GGGGAGGGCGAGGTCGAAACGATGACGACGTGTGACTTGCCGAATGTGTT
TAATATGTTGGCGTGTGGGAGTTTGGTGGGGGCGCTGGCCTTGTCGCGGT
TGGCGTGGCGGGAAATAAGGGATGCTGGAAGGGGGAGGTAGATGCCGCCA
CCACGTCCCCTCGCACATCTCTCACCGTGGCCCCTGCCCACCCACGCGGC
CGTCTTTGGCCTCACCTTCTTCGTATGGGCCTCTGTTCATGCGGGACGCA
AGTCCTACTCCATCATCAAGCCGATACTGGTCTCCAACAGCTGGTTCGGC
ACGGACACGGCTGTCAAAGTGTCGTGGGCTGACACCAGCTTCTTTCTCTT
TTATGCAGTTGGATGCGGCTTCGGCAAGATCAGTGATTCCAAAGACCCAC
GTCTTGTCATAACTATCTCCCTACTTATGGCCGCTGCGTTGCTCGTCTGC
TTCGGTCTAGGTGATTTTTTTGACATCCACAGTGTTGTAGCATTTTGCCT
CTTGTGGGGAATGCAAGCTTTTGCCCAAGCACTCGTCTGGCCCGGGTGCA
TTGCCGTCTTGGGAGAATGGTTCCCTTACAAACGTCGAGCAGCCGTGATG
GGCTTGTGGTGTTGTGCCAATAATATCGGGAATCTCCTAGGGACGAGTGT
CGGAGAGGTGGCTATGGTGGCTGCGGCAGAAAAGCGATGGGGAGCTGTCA
TGATGGCGAATGCGTTGTTAATGCTCATGGCGCCGGTGCTGGTATTTCTT
CATCTCACGCCTTTGCCGCCGCCGGGGATGAATTCGAAGAGGCAAG

Synonyms

Publications