jgi.p|Nanoce1779_2|398213, mRNA_3144 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|398213
Unique NamemRNA_3144
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1036
Alignment locationscaffold_7:764943..765978 -

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Properties
Property NameValue
TranscriptId398299
TrackFilteredModels2
ProteinId398213
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:764943..765978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|398213gene_3144Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|398213mRNA_3144-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3144CDS_3144Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3144 ID=mRNA_3144|Name=jgi.p|Nanoce1779_2|398213|organism=Nannochloropsis oceanica|type=mRNA|length=1036bp
CATCATGCAACCTCTCCACACCATGTCACCGTAACTCCTCACCTTCCTTT
CCCTCCCTTCCAGTACACCACTTGGCTCACCTGCGCCCATCTACAATTCA
TCCTCTGCCTCCTCCTCCGCCAATGCCACCCCCCGCCGCCTTCGAAGCGG
AAGCATCGGCTTGAGCGGCCTCGGCGCCTCCACGACCTCCACCTCTTCCT
CCTCATCTTCCTCTTCCTCCTCCCTTCTTCTTCCGAGCAAAAGCGCATAC
GTTGGCGTCTTTCGCCATGCACCTGCCACGCGTGGTTTTAAGGACTTGGT
TTGGGAGCCATCTTTCTCTACGGGCCGTCCGTCTCTGACTCAGATGGACC
TAGCGCGTCAAGAAAGGTTTAGGACGCGGCATGTTGGCCTCTCTGAGTTG
GTACAGCTTCCGTCTACGGTGTATAAGGAGTTGATTGCCCGCCGTCGTCG
CGAGCGGTTGGAGAGAGAATCGGGAATGGGGGTCCTGGTGGATGAGGAGG
CCGAGGAGGCCTACTTTGTGATGGACGAAGAGGAAGGGTTTCGGGTGCAG
GGAGGAGATGAGTGGGAGGTGGAGGAAGGGGAAGGCGGGCGGCACCTGTG
TGTGATTTGCTTGGAGGGATTTACACCGTGGGATGTGGTCAGAGAATTAC
CTGCTTGCCAACACATTCACCATCAACGGTGTCTAGATGTTTGGTTGAGG
GGAGCAGCGTCCTATGAGGCATGCTATACCCGGAGTTGTCCGACGTGTAA
GACCCCTATTGACTTCTTTCCTCCCTCCCTTTCTGTTTTGCTCAAGGAGG
GGGAGGTCAAGAGCAGGGAGGAGGGAGGGAAAGGAAATGAGGAGGGAAAT
GGAGGAGAGGGATGCGGCAGCAGAGGGCAGGCGCCGAAGTCTTTTTTGGA
GAATATTTACGAGATACCCAGGATGGCTTTTATGAGGGTGGGCAACTCGC
TTATGCAGCAGACTAGCAGCAGCAGCAGCAGCAGCAGCAGAGTATAAACC
GTCTTCGGCAGATAGAGGGATGGGGGGGGTGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|398213

>mRNA_3144-protein ID=mRNA_3144-protein|Name=jgi.p|Nanoce1779_2|398213|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MDLARQERFRTRHVGLSELVQLPSTVYKELIARRRRERLERESGMGVLVD
EEAEEAYFVMDEEEGFRVQGGDEWEVEEGEGGRHLCVICLEGFTPWDVVR
ELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDFFPPSLSVLL
KEGEVKSREEGGKGNEEGNGGEGCGSRGQAPKSFLENIYEIPRMAFMRVG
NSLMQQTSSSSSSSSRV*
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mRNA from alignment at scaffold_7:764943..765978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3144 ID=mRNA_3144|Name=jgi.p|Nanoce1779_2|398213|organism=Nannochloropsis oceanica|type=mRNA|length=1036bp|location=Sequence derived from alignment at scaffold_7:764943..765978- (Nannochloropsis oceanica)
CATCATGCAACCTCTCCACACCATGTCACCGTAACTCCTCACCTTCCTTT
CCCTCCCTTCCAGTACACCACTTGGCTCACCTGCGCCCATCTACAATTCA
TCCTCTGCCTCCTCCTCCGCCAATGCCACCCCCCGCCGCCTTCGAAGCGG
AAGCATCGGCTTGAGCGGCCTCGGCGCCTCCACGACCTCCACCTCTTCCT
CCTCATCTTCCTCTTCCTCCTCCCTTCTTCTTCCGAGCAAAAGCGCATAC
GTTGGCGTCTTTCGCCATGCACCTGCCACGCGTGGTTTTAAGGACTTGGT
TTGGGAGCCATCTTTCTCTACGGGCCGTCCGTCTCTGACTCAGATGGACC
TAGCGCGTCAAGAAAGGTTTAGGACGCGGCATGTTGGCCTCTCTGAGTTG
GTACAGCTTCCGTCTACGGTGTATAAGGAGTTGATTGCCCGCCGTCGTCG
CGAGCGGTTGGAGAGAGAATCGGGAATGGGGGTCCTGGTGGATGAGGAGG
CCGAGGAGGCCTACTTTGTGATGGACGAAGAGGAAGGGTTTCGGGTGCAG
GGAGGAGATGAGTGGGAGGTGGAGGAAGGGGAAGGCGGGCGGCACCTGTG
TGTGATTTGCTTGGAGGGATTTACACCGTGGGATGTGGTCAGAGAATTAC
CTGCTTGCCAACACATTCACCATCAACGGTGTCTAGATGTTTGGTTGAGG
GGAGCAGCGTCCTATGAGGCATGCTATACCCGGAGTTGTCCGACGTGTAA
GACCCCTATTGACTTCTTTCCTCCCTCCCTTTCTGTTTTGCTCAAGGAGG
GGGAGGTCAAGAGCAGGGAGGAGGGAGGGAAAGGAAATGAGGAGGGAAAT
GGAGGAGAGGGATGCGGCAGCAGAGGGCAGGCGCCGAAGTCTTTTTTGGA
GAATATTTACGAGATACCCAGGATGGCTTTTATGAGGGTGGGCAACTCGC
TTATGCAGCAGACTAGCAGCAGCAGCAGCAGCAGCAGCAGAGTATAAACC
GTCTTCGGCAGATAGAGGGATGGGGGGGGTGGGAGG
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Coding sequence (CDS) from alignment at scaffold_7:764943..765978-

>mRNA_3144 ID=mRNA_3144|Name=jgi.p|Nanoce1779_2|398213|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_7:764943..765978- (Nannochloropsis oceanica)
ATGGACCTAGCGCGTCAAGAAAGGTTTAGGACGCGGCATGTTGGCCTCTC
TGAGTTGGTACAGCTTCCGTCTACGGTGTATAAGGAGTTGATTGCCCGCC
GTCGTCGCGAGCGGTTGGAGAGAGAATCGGGAATGGGGGTCCTGGTGGAT
GAGGAGGCCGAGGAGGCCTACTTTGTGATGGACGAAGAGGAAGGGTTTCG
GGTGCAGGGAGGAGATGAGTGGGAGGTGGAGGAAGGGGAAGGCGGGCGGC
ACCTGTGTGTGATTTGCTTGGAGGGATTTACACCGTGGGATGTGGTCAGA
GAATTACCTGCTTGCCAACACATTCACCATCAACGGTGTCTAGATGTTTG
GTTGAGGGGAGCAGCGTCCTATGAGGCATGCTATACCCGGAGTTGTCCGA
CGTGTAAGACCCCTATTGACTTCTTTCCTCCCTCCCTTTCTGTTTTGCTC
AAGGAGGGGGAGGTCAAGAGCAGGGAGGAGGGAGGGAAAGGAAATGAGGA
GGGAAATGGAGGAGAGGGATGCGGCAGCAGAGGGCAGGCGCCGAAGTCTT
TTTTGGAGAATATTTACGAGATACCCAGGATGGCTTTTATGAGGGTGGGC
AACTCGCTTATGCAGCAGACTAGCAGCAGCAGCAGCAGCAGCAGCAGAGT
ATAA
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Synonyms
Publications