jgi.p|Nanoce1779_2|526066, mRNA_3141 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526066
Unique NamemRNA_3141
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length624
Alignment locationscaffold_7:753077..755084 -

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Properties
Property NameValue
TranscriptId526152
TrackFilteredModels2
ProteinId526066
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:753077..755084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526066gene_3141Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526066mRNA_3141-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3141CDS_3141Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3141 ID=mRNA_3141|Name=jgi.p|Nanoce1779_2|526066|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGGCGACGGTGGGTGCAGCAGCCACGGCGGCATCCCGGGCCGAGGTTTT
GCATGAGAGCCTAGACCTGCGCGTGGACTTGGAGAAGCGTGAAGTTAAGG
GTCATGCCACCGTCTGGGTGCTGTTGCCGCCCTTACCTGCGGGAGATTTG
GGGACGGTTGACGAGGGCGTTATGGAATACCGGCTGCATGCCCGACAGAT
GGAAATCCACGAGGTCAAAGTGAATGACATGCCGGCCTCCTACATCGAAG
ACATTGATGACAGGGAGAAGAGTGGCTCGTCTGCGCGAATGGACGGGGAG
GCCTTGGACCTTCACTACCGATGTCAACTCATTGCTTCGCAGGAGGGTGA
GCTTAGCCTACAACTGCCCAAGCGACAATCATGGAGGCCACCGCCGTCCG
ACGTCCAAGAGGAAGGCGACGAAACTGTCAAAAATATTCCACAACAGCAA
GTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGAAAAAGGAGAAAGAGGAGGTGCCAATGCCATGGACGT
CAATGATAATGCCCGACTCATCGCACCCGCGAACGGCACTTCCACCGCGG
GTCATGTCCATCCCCAGGCATTAA
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protein sequence of jgi.p|Nanoce1779_2|526066

>mRNA_3141-protein ID=mRNA_3141-protein|Name=jgi.p|Nanoce1779_2|526066|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MATVGAAATAASRAEVLHESLDLRVDLEKREVKGHATVWVLLPPLPAGDL
GTVDEGVMEYRLHARQMEIHEVKVNDMPASYIEDIDDREKSGSSARMDGE
ALDLHYRCQLIASQEGELSLQLPKRQSWRPPPSDVQEEGDETVKNIPQQQ
VEEEEEEEEEEEEEEEEEEEEKKEKEEVPMPWTSMIMPDSSHPRTALPPR
VMSIPRH*
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mRNA from alignment at scaffold_7:753077..755084-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3141 ID=mRNA_3141|Name=jgi.p|Nanoce1779_2|526066|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp|location=Sequence derived from alignment at scaffold_7:753077..755084- (Nannochloropsis oceanica)
ATGGCGACGGTGGGTGCAGCAGCCACGGCGGCATCCCGGGCCGAGGTTTT
GCATGAGAGCCTAGACCTGCGCGTGGACTTGGAGAAGCGTGAAGTTAAGG
GTCATGCCACCGTCTGGGTGCTGTTGCCGCCCTTACCTGCGGGAGATTTG
GGGACGGTTGACGAGGGCGTTATGGAATACCGGCTGCATGCCCGACAGAT
GGAAATCCACGAGGTCAAAGTGAATGACATGCCGGCCTCCTACATGTACC
CGCACCCCGTCGACCTCCTTCGTGATTTTGTTCCACCCGGGAGCGAAGAC
ATTGATGACAGGGAGAAGAGTGGCTCGTCTGCGCGAATGGACGGGGAGGC
CTTGGACCTTCACTACCGATGTCAACTCATTGCTTCGCAGGAGGGTGAGC
TTAGCCTACAACTGCCCAAGCGACAATCATGGAGGCCACCGCCGTCCGAC
GTCCAAGAGGAAGGCGACGAAACTGTCAAAAATATTCCACAAGTGGTCCT
GAATGCCGGCATAGCTGCCCTCCGGATTTGCAAGATCGAGATTGATTACA
GGTTGCAGAATCCTGTGGCTGGCCTGCGTTTTGATAGTCATCCTGCCCAT
GCCTATAGCATGCGTTGTCCCAGCGTCCTGCACGATTTTGATGGGCCCCG
ATGTTGGTTCCCTTGCGCCGACCGCACTACGGACATTTTTACTCTGGACA
TGGTGGTAGCGGTTGTTTCTCCAGCGTCGTCGAATAGAGGGGAGGTTGGG
AATGGGGACACCGAGGCTAATGACCGAGAGGGCAATCATGTAGGAAAGGT
TGACATTGTGAACGACAGTGGTACCAACAGTAGTAGTAGAGCAAGCACCA
CAATTAGCAACAGCAGCACAGCCATCAACAGAGATGAGGAGCATCCAGTA
GTAGTGCTGGTTGGAGGTGGGCAGCTTTTGGGGAAGGAGAGAAAGGTGGC
GGACGGGACTGTAGTGTGGCGTTATGCAATAGAAACACCCATTACGGCAT
CAGCTGTCTCGCTGGTTGTGGGTCACTTTGGGAAGTATGTGGATCCGGGC
GTGCCTCGATTGACTCACCATTATCTGCTGCGGGAGGAGCGACGAGCAGC
AACCTTCAAAGCTTCCAATGGAAGAAATAGCCTTCCAACAATAGAGAAGC
CATTGCCACCACCACCGCCACCACGATCGTGGGTAAGTCACAGCGTGGAG
GGCATGGGTCCGGCTATGAGCTTTCTGGCGGATTTCTTTCACCTCGCTCC
AGGCGGCGGAGAAGCAGCAACAGGCAGTGCCCCTACCCCTTCTGTCGTAG
TTCCTTACCTCGAGCACCGAATTGTGTTCGTCAAGGGCCTACCTGAGGCC
AGTATGGCTTTCCACGGCCTCTCCTTGCATAGGGTAGAGGACGTGCACCC
TCCTCGTGTGTTCGACCACTCCATGACCTTTCACCTCGCTCTCGCCGAGG
GCCTCTTCGCGTCTTGGCTTCTCCCTCGAGTTCGTCCCCGCTTCACCCGC
GACCGTTGGATCTATCACGGCGTGTTAGGATATCTCGTCCTAATGTACGT
ACGGCGGCGATACGGCGAGCATGAATACCGATATCGTCTGCTGAGATTGA
TGGATGCAGTCACAGCTTTGGAACGCTCGGGGCAAAGCACGCCATTACTG
CCTCCAGACTCAGTCCTTTTGGCGAGTGAGATATACAGTCCTGCTAGCTT
GGAATTGGTGCGAGTCAAGCCTCCAGTGATTATGCATATGATTGAACAGC
GTGTCGGCCGCAAATCTTTGCGAGATGTCCTGCGCTCCGTGGCGTGCCCC
ACGCCCGTCGTGTCGGCAATACCAGCAGCAGCAAGTGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAA
AAGGAGAAAGAGGAGGTGCCAATGCCATGGACGTCAATGATAATGCCCGA
CTCATCGCACCCGCGAACGGCACTTCCACCGCGGGTCATGTCCATCCCCA
GGCATTAA
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Coding sequence (CDS) from alignment at scaffold_7:753077..755084-

>mRNA_3141 ID=mRNA_3141|Name=jgi.p|Nanoce1779_2|526066|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_7:753077..755084- (Nannochloropsis oceanica)
CAGCAAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGAAAAAGGAGAAAGAGGAGGTGCCAATGCCAT
GGACGTCAATGATAATGCCCGACTCATCGCACCCGCGAACGGCACTTCCA
CCGCGGGTCATGTCCATCCCCAGGCATTAACGAAGACATTGATGACAGGG
AGAAGAGTGGCTCGTCTGCGCGAATGGACGGGGAGGCCTTGGACCTTCAC
TACCGATGTCAACTCATTGCTTCGCAGGAGGGTGAGCTTAGCCTACAACT
GCCCAAGCGACAATCATGGAGGCCACCGCCGTCCGACGTCCAAGAGGAAG
GCGACGAAACTGTCAAAAATATTCCACAAATGGCGACGGTGGGTGCAGCA
GCCACGGCGGCATCCCGGGCCGAGGTTTTGCATGAGAGCCTAGACCTGCG
CGTGGACTTGGAGAAGCGTGAAGTTAAGGGTCATGCCACCGTCTGGGTGC
TGTTGCCGCCCTTACCTGCGGGAGATTTGGGGACGGTTGACGAGGGCGTT
ATGGAATACCGGCTGCATGCCCGACAGATGGAAATCCACGAGGTCAAAGT
GAATGACATGCCGGCCTCCTACATCAGCAAGTGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAAAGG
AGAAAGAGGAGGTGCCAATGCCATGGACGTCAATGATAATGCCCGACTCA
TCGCACCCGCGAACGGCACTTCCACCGCGGGTCATGTCCATCCCCAGGCA
TTAACGAAGACATTGATGACAGGGAGAAGAGTGGCTCGTCTGCGCGAATG
GACGGGGAGGCCTTGGACCTTCACTACCGATGTCAACTCATTGCTTCGCA
GGAGGGTGAGCTTAGCCTACAACTGCCCAAGCGACAATCATGGAGGCCAC
CGCCGTCCGACGTCCAAGAGGAAGGCGACGAAACTGTCAAAAATATTCCA
CAAATGGCGACGGTGGGTGCAGCAGCCACGGCGGCATCCCGGGCCGAGGT
TTTGCATGAGAGCCTAGACCTGCGCGTGGACTTGGAGAAGCGTGAAGTTA
AGGGTCATGCCACCGTCTGGGTGCTGTTGCCGCCCTTACCTGCGGGAGAT
TTGGGGACGGTTGACGAGGGCGTTATGGAATACCGGCTGCATGCCCGACA
GATGGAAATCCACGAGGTCAAAGTGAATGACATGCCGGCCTCCTACATCA
GCAAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGAAAAAGGAGAAAGAGGAGGTGCCAATGCCATGG
ACGTCAATGATAATGCCCGACTCATCGCACCCGCGAACGGCACTTCCACC
GCGGGTCATGTCCATCCCCAGGCATTAACGAAGACATTGATGACAGGGAG
AAGAGTGGCTCGTCTGCGCGAATGGACGGGGAGGCCTTGGACCTTCACTA
CCGATGTCAACTCATTGCTTCGCAGGAGGGTGAGCTTAGCCTACAACTGC
CCAAGCGACAATCATGGAGGCCACCGCCGTCCGACGTCCAAGAGGAAGGC
GACGAAACTGTCAAAAATATTCCACAAATGGCGACGGTGGGTGCAGCAGC
CACGGCGGCATCCCGGGCCGAGGTTTTGCATGAGAGCCTAGACCTGCGCG
TGGACTTGGAGAAGCGTGAAGTTAAGGGTCATGCCACCGTCTGGGTGCTG
TTGCCGCCCTTACCTGCGGGAGATTTGGGGACGGTTGACGAGGGCGTTAT
GGAATACCGGCTGCATGCCCGACAGATGGAAATCCACGAGGTCAAAGTGA
ATGACATGCCGGCCTCCTACAT
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Synonyms
Publications