jgi.p|Nanoce1779_2|584697, mRNA_3140 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584697
Unique Name	mRNA_3140
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2418
Alignment location	scaffold_7:750297..752714 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584783
Track	FilteredModels2
ProteinId	584697

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:750297..752714 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584697	gene_3140	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584697	mRNA_3140-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3140	CDS_3140	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:750297..752714-
coding sequence from alignment at scaffold_7:750297..752714-

mRNA sequence

>mRNA_3140 ID=mRNA_3140|Name=jgi.p|Nanoce1779_2|584697|organism=Nannochloropsis oceanica|type=mRNA|length=2418bp
GCTACGCCTGTAGGGGGGCCAAATCTGACCAAGGCGGCGAAGTTTCAGGC
AGAGGTAGCAGCAGCATCAGCAGCAGCAGCAGAAGGAGGAAAGGAGGAAA
GTTGTGGCACTGCTAAAGGCAGTGAGGGAGAGAAGCCGAAAAAGCGTCGC
AAGAAGGCCGAACTGGCTGCGGAAGCTGCCGCTGCACTCAGTGCACCTTA
CGGTGAAGGACACGGAGGAGGTGAGGCACCAGCAATAGGAGGAGTGCCTA
TGGCAACTCCAGCCGTAGGAGCGAGTGTCACAAGCATTGGTATGAACATC
CGCCGAGACGAGGATGAGTACGCGGCATCGCGACGCGAGCACTACAGTCC
GGTTGTGTGGGTGCGGCTCGATCCGGACTTGCAGTGGATTACAGAATGGG
AATGGGAGAATTTTCCCGAGTATCTCTTTCTCGAACAGCTCCACCGCGAT
ACCGACGCCGCTGCTCAATGCCTTGCCTTACGCGCTCTTAGTGCTTATCC
CAAGTCTGGTCAAGATGCAGCGGTTGCAGTAGGTGCTGGAGGGATGGGGG
CGGTGACGCGACCCTCCATGGCAGCTTTGGCCATGAGTGATTGTCTGAGA
GGCAAGGTCCGTCCTGGTTGGGTCGAGCCGTCGTTGAGCGTGCGGATGGA
AGCAGCTCGGGCCTTGGCAGCATGGCAGAACAACCATGCACCCGGGTCTA
TGGTTGCTCAGGAGACGGGTTGGAGGGGTCTGGAACTCCTCCTTCAAGAT
TACCGGGAGCGTTTTTTTGATGCCAGTGGTCGCATACCGTTACCCGCAGA
TTTCACAGACGAAGCAGAATATCAGATCCAAAAAAGTTTGATTTACGCCG
TCTCTCTCATCCGAGCCAAGGACGGGTGCACTCCTTCATCAATCTGGGAC
TTTCTTCGAACCATTCTTGAGGCACACGACAACTCTCACAACCCCTTTGA
TGACTCCGCCTTTCTCCGCACGGTCCTCATGGGTGTCGCCAATCTTCACA
TTGGCCCTTCCCAAGATCGAGCCGGCGCTGGCCTCGCCTCTGACCTATTT
CCCCTGGTCCATCGATTTTTAAGCTGGCACCAAGAAGTCGGCTCGTATGA
CCATATTGTGGAAGCAGCTGCTCTTCGCGCCATGTGCAACCTGGAGCTCA
TCCGTGGAGGGATCCCTGGACAGAGTGTCGATTATCTGCAGTACGCCAAG
CCCGTGCCTGATCGAGTGCTGGGAAAAGCAGCACTAATGAACCCTTCCTC
CGTCGTGTCCTTGCGTTTGGCGGCCTTGGAAGCAGTGGCGCGGCTGCGTG
TGCGTGAAGTGAAGGTGCCTGGTGCACCGACCACGGCGGCAGCGGCAAAG
GCGGGAGAAGGGTTGGAGGGACCAATACGGGCGTTGCAGTGGGTGTTGAG
TGTAGTACAGCATGAGAAGGCGACGGGGTCTACCATTTTCCGGTATAAAG
CCCTGCAAATTATGTTTGAAACTTTACGGCATCCATTGGATTATCGTCCT
TCCTTAGTGACGATCCACCAGCCAATCGCCTTGGCTCCGACGCATTTCCT
CGACCATTTAACGCACGAAGGCCCCGCCTACGACAAACTCGATGCAGGCA
TATTGAATCTCACCCATCCCCCCTGTAGCAGTCGTGAGAATCCTTTCCTG
AATTCGTTGCGTTCAGTGGCATGTGCCGAGGCGAGTGCGGGCGTCCGGCG
GCAATTGTGGCGATTTATCACGCGGGAGACATGGTACAATCAGCCGCTAA
GGGGGATGGCGATGTCCTTGCATCAAGCTATTTGGGGTTGGTGTCCCTTT
CCACTCGGAGGGGGAGTAAGGGAAGGGGAGGGGGAAGAGATGCTAACGAC
CAGCATCAGTAGCAAAAAGGATTTTGCGGGGTTGGAAAATGTGTATCTGG
AACTCTTGAGTCAGCGGGCGGATGGGATATTTTCCTTACGATCCACTCTA
TTTGATGAGCGGGACTGGCGGGTGTGGCGAAACCGACGGGCGCGGCGACT
GGACATGTTGCAGGGGCAGCAAGGCGCGGGGGGTAGGAGGGAGAACGGCA
CCAAGACTTTGTCCTGGGACGATTTGTCGGAGGACGAACGCGGCGAGCGT
AAGGAGTGTCTGGAGTCCCGAGAGGCTATCACCAAGAGTAACTCCAAGGT
GCGTCTAAAGCTCTCTATCGCGCCGTCATCTTCGTCTTCTGTGATAGCAC
CTTCGGGAGGCGCCGGAGGTGACGGCATGTACTTGGATGGATGAATGAGG
TGGATGAATGAGGTGGAACTTGTGTGGAGGCGGGAAGGAGTTGAATGATA
CATAGCAAAGAAAAGCAAGAATGACAACGACCCAAATGGAACCAAAATGT
CATAAAGTAAATGAAAATACACACATGTGAAAGCATTTTGGACAGATGCT
GCGTTGCTTTGGGGCACG

protein sequence of jgi.p|Nanoce1779_2|584697

>mRNA_3140-protein ID=mRNA_3140-protein|Name=jgi.p|Nanoce1779_2|584697|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MATPAVGASVTSIGMNIRRDEDEYAASRREHYSPVVWVRLDPDLQWITEW
EWENFPEYLFLEQLHRDTDAAAQCLALRALSAYPKSGQDAAVAVGAGGMG
AVTRPSMAALAMSDCLRGKVRPGWVEPSLSVRMEAARALAAWQNNHAPGS
MVAQETGWRGLELLLQDYRERFFDASGRIPLPADFTDEAEYQIQKSLIYA
VSLIRAKDGCTPSSIWDFLRTILEAHDNSHNPFDDSAFLRTVLMGVANLH
IGPSQDRAGAGLASDLFPLVHRFLSWHQEVGSYDHIVEAAALRAMCNLEL
IRGGIPGQSVDYLQYAKPVPDRVLGKAALMNPSSVVSLRLAALEAVARLR
VREVKVPGAPTTAAAAKAGEGLEGPIRALQWVLSVVQHEKATGSTIFRYK
ALQIMFETLRHPLDYRPSLVTIHQPIALAPTHFLDHLTHEGPAYDKLDAG
ILNLTHPPCSSRENPFLNSLRSVACAEASAGVRRQLWRFITRETWYNQPL
RGMAMSLHQAIWGWCPFPLGGGVREGEGEEMLTTSISSKKDFAGLENVYL
ELLSQRADGIFSLRSTLFDERDWRVWRNRRARRLDMLQGQQGAGGRRENG
TKTLSWDDLSEDERGERKECLESREAITKSNSKVRLKLSIAPSSSSSVIA
PSGGAGGDGMYLDG*

mRNA from alignment at scaffold_7:750297..752714-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3140 ID=mRNA_3140|Name=jgi.p|Nanoce1779_2|584697|organism=Nannochloropsis oceanica|type=mRNA|length=2418bp|location=Sequence derived from alignment at scaffold_7:750297..752714- (Nannochloropsis oceanica)
GCTACGCCTGTAGGGGGGCCAAATCTGACCAAGGCGGCGAAGTTTCAGGC
AGAGGTAGCAGCAGCATCAGCAGCAGCAGCAGAAGGAGGAAAGGAGGAAA
GTTGTGGCACTGCTAAAGGCAGTGAGGGAGAGAAGCCGAAAAAGCGTCGC
AAGAAGGCCGAACTGGCTGCGGAAGCTGCCGCTGCACTCAGTGCACCTTA
CGGTGAAGGACACGGAGGAGGTGAGGCACCAGCAATAGGAGGAGTGCCTA
TGGCAACTCCAGCCGTAGGAGCGAGTGTCACAAGCATTGGTATGAACATC
CGCCGAGACGAGGATGAGTACGCGGCATCGCGACGCGAGCACTACAGTCC
GGTTGTGTGGGTGCGGCTCGATCCGGACTTGCAGTGGATTACAGAATGGG
AATGGGAGAATTTTCCCGAGTATCTCTTTCTCGAACAGCTCCACCGCGAT
ACCGACGCCGCTGCTCAATGCCTTGCCTTACGCGCTCTTAGTGCTTATCC
CAAGTCTGGTCAAGATGCAGCGGTTGCAGTAGGTGCTGGAGGGATGGGGG
CGGTGACGCGACCCTCCATGGCAGCTTTGGCCATGAGTGATTGTCTGAGA
GGCAAGGTCCGTCCTGGTTGGGTCGAGCCGTCGTTGAGCGTGCGGATGGA
AGCAGCTCGGGCCTTGGCAGCATGGCAGAACAACCATGCACCCGGGTCTA
TGGTTGCTCAGGAGACGGGTTGGAGGGGTCTGGAACTCCTCCTTCAAGAT
TACCGGGAGCGTTTTTTTGATGCCAGTGGTCGCATACCGTTACCCGCAGA
TTTCACAGACGAAGCAGAATATCAGATCCAAAAAAGTTTGATTTACGCCG
TCTCTCTCATCCGAGCCAAGGACGGGTGCACTCCTTCATCAATCTGGGAC
TTTCTTCGAACCATTCTTGAGGCACACGACAACTCTCACAACCCCTTTGA
TGACTCCGCCTTTCTCCGCACGGTCCTCATGGGTGTCGCCAATCTTCACA
TTGGCCCTTCCCAAGATCGAGCCGGCGCTGGCCTCGCCTCTGACCTATTT
CCCCTGGTCCATCGATTTTTAAGCTGGCACCAAGAAGTCGGCTCGTATGA
CCATATTGTGGAAGCAGCTGCTCTTCGCGCCATGTGCAACCTGGAGCTCA
TCCGTGGAGGGATCCCTGGACAGAGTGTCGATTATCTGCAGTACGCCAAG
CCCGTGCCTGATCGAGTGCTGGGAAAAGCAGCACTAATGAACCCTTCCTC
CGTCGTGTCCTTGCGTTTGGCGGCCTTGGAAGCAGTGGCGCGGCTGCGTG
TGCGTGAAGTGAAGGTGCCTGGTGCACCGACCACGGCGGCAGCGGCAAAG
GCGGGAGAAGGGTTGGAGGGACCAATACGGGCGTTGCAGTGGGTGTTGAG
TGTAGTACAGCATGAGAAGGCGACGGGGTCTACCATTTTCCGGTATAAAG
CCCTGCAAATTATGTTTGAAACTTTACGGCATCCATTGGATTATCGTCCT
TCCTTAGTGACGATCCACCAGCCAATCGCCTTGGCTCCGACGCATTTCCT
CGACCATTTAACGCACGAAGGCCCCGCCTACGACAAACTCGATGCAGGCA
TATTGAATCTCACCCATCCCCCCTGTAGCAGTCGTGAGAATCCTTTCCTG
AATTCGTTGCGTTCAGTGGCATGTGCCGAGGCGAGTGCGGGCGTCCGGCG
GCAATTGTGGCGATTTATCACGCGGGAGACATGGTACAATCAGCCGCTAA
GGGGGATGGCGATGTCCTTGCATCAAGCTATTTGGGGTTGGTGTCCCTTT
CCACTCGGAGGGGGAGTAAGGGAAGGGGAGGGGGAAGAGATGCTAACGAC
CAGCATCAGTAGCAAAAAGGATTTTGCGGGGTTGGAAAATGTGTATCTGG
AACTCTTGAGTCAGCGGGCGGATGGGATATTTTCCTTACGATCCACTCTA
TTTGATGAGCGGGACTGGCGGGTGTGGCGAAACCGACGGGCGCGGCGACT
GGACATGTTGCAGGGGCAGCAAGGCGCGGGGGGTAGGAGGGAGAACGGCA
CCAAGACTTTGTCCTGGGACGATTTGTCGGAGGACGAACGCGGCGAGCGT
AAGGAGTGTCTGGAGTCCCGAGAGGCTATCACCAAGAGTAACTCCAAGGT
GCGTCTAAAGCTCTCTATCGCGCCGTCATCTTCGTCTTCTGTGATAGCAC
CTTCGGGAGGCGCCGGAGGTGACGGCATGTACTTGGATGGATGAATGAGG
TGGATGAATGAGGTGGAACTTGTGTGGAGGCGGGAAGGAGTTGAATGATA
CATAGCAAAGAAAAGCAAGAATGACAACGACCCAAATGGAACCAAAATGT
CATAAAGTAAATGAAAATACACACATGTGAAAGCATTTTGGACAGATGCT
GCGTTGCTTTGGGGCACG

Coding sequence (CDS) from alignment at scaffold_7:750297..752714-

>mRNA_3140 ID=mRNA_3140|Name=jgi.p|Nanoce1779_2|584697|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at scaffold_7:750297..752714- (Nannochloropsis oceanica)
ATGGCAACTCCAGCCGTAGGAGCGAGTGTCACAAGCATTGGTATGAACAT
CCGCCGAGACGAGGATGAGTACGCGGCATCGCGACGCGAGCACTACAGTC
CGGTTGTGTGGGTGCGGCTCGATCCGGACTTGCAGTGGATTACAGAATGG
GAATGGGAGAATTTTCCCGAGTATCTCTTTCTCGAACAGCTCCACCGCGA
TACCGACGCCGCTGCTCAATGCCTTGCCTTACGCGCTCTTAGTGCTTATC
CCAAGTCTGGTCAAGATGCAGCGGTTGCAGTAGGTGCTGGAGGGATGGGG
GCGGTGACGCGACCCTCCATGGCAGCTTTGGCCATGAGTGATTGTCTGAG
AGGCAAGGTCCGTCCTGGTTGGGTCGAGCCGTCGTTGAGCGTGCGGATGG
AAGCAGCTCGGGCCTTGGCAGCATGGCAGAACAACCATGCACCCGGGTCT
ATGGTTGCTCAGGAGACGGGTTGGAGGGGTCTGGAACTCCTCCTTCAAGA
TTACCGGGAGCGTTTTTTTGATGCCAGTGGTCGCATACCGTTACCCGCAG
ATTTCACAGACGAAGCAGAATATCAGATCCAAAAAAGTTTGATTTACGCC
GTCTCTCTCATCCGAGCCAAGGACGGGTGCACTCCTTCATCAATCTGGGA
CTTTCTTCGAACCATTCTTGAGGCACACGACAACTCTCACAACCCCTTTG
ATGACTCCGCCTTTCTCCGCACGGTCCTCATGGGTGTCGCCAATCTTCAC
ATTGGCCCTTCCCAAGATCGAGCCGGCGCTGGCCTCGCCTCTGACCTATT
TCCCCTGGTCCATCGATTTTTAAGCTGGCACCAAGAAGTCGGCTCGTATG
ACCATATTGTGGAAGCAGCTGCTCTTCGCGCCATGTGCAACCTGGAGCTC
ATCCGTGGAGGGATCCCTGGACAGAGTGTCGATTATCTGCAGTACGCCAA
GCCCGTGCCTGATCGAGTGCTGGGAAAAGCAGCACTAATGAACCCTTCCT
CCGTCGTGTCCTTGCGTTTGGCGGCCTTGGAAGCAGTGGCGCGGCTGCGT
GTGCGTGAAGTGAAGGTGCCTGGTGCACCGACCACGGCGGCAGCGGCAAA
GGCGGGAGAAGGGTTGGAGGGACCAATACGGGCGTTGCAGTGGGTGTTGA
GTGTAGTACAGCATGAGAAGGCGACGGGGTCTACCATTTTCCGGTATAAA
GCCCTGCAAATTATGTTTGAAACTTTACGGCATCCATTGGATTATCGTCC
TTCCTTAGTGACGATCCACCAGCCAATCGCCTTGGCTCCGACGCATTTCC
TCGACCATTTAACGCACGAAGGCCCCGCCTACGACAAACTCGATGCAGGC
ATATTGAATCTCACCCATCCCCCCTGTAGCAGTCGTGAGAATCCTTTCCT
GAATTCGTTGCGTTCAGTGGCATGTGCCGAGGCGAGTGCGGGCGTCCGGC
GGCAATTGTGGCGATTTATCACGCGGGAGACATGGTACAATCAGCCGCTA
AGGGGGATGGCGATGTCCTTGCATCAAGCTATTTGGGGTTGGTGTCCCTT
TCCACTCGGAGGGGGAGTAAGGGAAGGGGAGGGGGAAGAGATGCTAACGA
CCAGCATCAGTAGCAAAAAGGATTTTGCGGGGTTGGAAAATGTGTATCTG
GAACTCTTGAGTCAGCGGGCGGATGGGATATTTTCCTTACGATCCACTCT
ATTTGATGAGCGGGACTGGCGGGTGTGGCGAAACCGACGGGCGCGGCGAC
TGGACATGTTGCAGGGGCAGCAAGGCGCGGGGGGTAGGAGGGAGAACGGC
ACCAAGACTTTGTCCTGGGACGATTTGTCGGAGGACGAACGCGGCGAGCG
TAAGGAGTGTCTGGAGTCCCGAGAGGCTATCACCAAGAGTAACTCCAAGG
TGCGTCTAAAGCTCTCTATCGCGCCGTCATCTTCGTCTTCTGTGATAGCA
CCTTCGGGAGGCGCCGGAGGTGACGGCATGTACTTGGATGGATGA

Synonyms

Publications