jgi.p|Nanoce1779_2|524125, mRNA_314 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524125
Unique NamemRNA_314
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1149
Alignment locationscaffold_3:777768..779321 -

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Properties
Property NameValue
TranscriptId524211
TrackFilteredModels2
ProteinId524125
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:777768..779321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524125gene_314Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524125mRNA_314-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_314CDS_314Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_314 ID=mRNA_314|Name=jgi.p|Nanoce1779_2|524125|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp
ATGCAGGCGCACGAGAAAGGTTCTACTTCGGGGGGCCCTTACAAGACGCT
GGTTTTGTATGTCTACCATGAAAGCGACGAGGTTACCAAGGATAATCTGC
TATTTTTCCTTAAGGCCGGCGTTGGGGACGTAGAAGATCCACTGACAGAT
TACGTCATTATTGTCAATGGCGAGGCCGCCATTGACCTGGACGGTCTCCC
GTCCAACGTCATGGTGGTCCGTCGCGGCAACACCTGCTATGACGGTGGCA
CGGCTGGGGAAGTTCTCGCAGGGATGGACATTAAGCCCTATCAATTCTTT
TTCTTCATAAACAGCTCCGTCCGCGGGCCTTTCCTTCCTTCCTACTTCCC
GCAATCGACGGGCGGAGGCCTGGGAGCAGCTTCTTCGGTGCACTCGTCGG
CGCGGCGATGGACGACGGCATTCACGGATTTATTAAACAGTCATGTAAAG
TTGGTCGGAACGACGATAAATTGCGAGATTCGCGTGCATGTTCAATCAAT
GCTGTTGGCCACAGACAGGGTGGGCATGGAGCTGTTGTTGAAGTCCGGAG
CGTTGGATTGCGCGGAGAATAGGGAGGATGCAATTATGAAATATGAGTTA
GGCGCGAGTGCCGTGATTATGGAAAATGGTTACGGTGTCGACTGCCTCAT
GCTCCGGTACGCGGGCATTGACTGGCTTGCCTTGGACCCGCCAGAGTGCA
ATGGAATGCGAAACCCTTATTTGACGTTGTTCAATGATGGGATGAATCAA
AATCCTTTGGAAGTGGTGTTCGTAAAGGTGAAGCCTCATATATTGGCGTC
GGATCACATCCTTCAACGGTTTTCGGATTATATTTTGGGGCGAGACGAGG
ATTTGAAAAGCAGTGGCTTATATACCCAAGTGATGCAGAATGTGCTGAGC
TACCGCAGGGAGAAACTTGCGAGAATGGTAGAGGATTGTCATGCTTCGTT
TGATCATGAGAGCTTCATAGCTCAGCATCCTGAACTGGGAAAAGAGACTC
CTCAAGCAAGATATGAGACTTTTTTGCGATCCCATTTATTTTCAGGGAAA
CCGTATCGTTTTTCTGTCCCGCAAACGCGGAAGGGGGATGTGACGCCTTA
CTATTGTGAGTCGTTTGTGTCTTATGGAGCGCCAGATTTTTTCGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|524125

>mRNA_314-protein ID=mRNA_314-protein|Name=jgi.p|Nanoce1779_2|524125|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MQAHEKGSTSGGPYKTLVLYVYHESDEVTKDNLLFFLKAGVGDVEDPLTD
YVIIVNGEAAIDLDGLPSNVMVVRRGNTCYDGGTAGEVLAGMDIKPYQFF
FFINSSVRGPFLPSYFPQSTGGGLGAASSVHSSARRWTTAFTDLLNSHVK
LVGTTINCEIRVHVQSMLLATDRVGMELLLKSGALDCAENREDAIMKYEL
GASAVIMENGYGVDCLMLRYAGIDWLALDPPECNGMRNPYLTLFNDGMNQ
NPLEVVFVKVKPHILASDHILQRFSDYILGRDEDLKSSGLYTQVMQNVLS
YRREKLARMVEDCHASFDHESFIAQHPELGKETPQARYETFLRSHLFSGK
PYRFSVPQTRKGDVTPYYCESFVSYGAPDFFG*
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mRNA from alignment at scaffold_3:777768..779321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_314 ID=mRNA_314|Name=jgi.p|Nanoce1779_2|524125|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp|location=Sequence derived from alignment at scaffold_3:777768..779321- (Nannochloropsis oceanica)
ATGCAGGCGCACGAGAAAGGTTCTACTTCGGGGGGCCCTTACAAGACGCT
GGTTTTGTATGTCTACCATGAAAGCGACGAGGTTACCAAGGATAATCTGC
TATTTTTCCTTAAGGTAAGAAGCATGGTAGGATGGTGGTGTAGGCGTGGA
GAAACAGATCACCGTGGACTAAGTTGCTGTGTTGTTTCTACATATCATGT
TTATTTGATATTGCTGTCGGAGTAAAGATCAAAACGAAGGGACGGACAGT
CAACTGAAAGAAAGTGGACTGGACAAACCCTCTCTTACACACGCACCATT
AACCCCACCCCCAGGCCGGCGTTGGGGACGTAGAAGATCCACTGACAGAT
TACGTCATTATTGTCAATGGCGAGGCCGCCATTGACCTGGACGGTCTCCC
GTCCAACGTCATGGTGGTCCGTCGCGGCAACACCTGCTATGACGGTGGCA
CGGCTGGGGAAGTTCTCGCAGGGATGGACATTAAGCCCTATCAATTCTTT
TTCTTCATAAACAGCTCCGTCCGCGGGCCTTTCCTTCCTTCCTACTTCCC
GCAATCGACGGGCGGAGGCCTGGGAGCAGCTTCTTCGGTGCACTCGTCGG
CGCGGCGATGGACGACGGCATTCACGGATTTATTAAACAGTCATGTAAAG
TTGGTCGGAACGACGATAAATTGCGAGATTCGCGTGCATGTTCAATCAAT
GCTGTTGGCCACAGACAGGGTGGGCATGGAGCTGTTGTTGAAGTCCGGAG
CGTTGGATTGCGCGGAGAATAGGGAGGATGCAATTATGAAATATGAGTTA
GGCGCGAGTGCCGTGATTATGGAAAATGGGTGAGCGGACTAGGAGAGGGG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCCGGGGCGAAAAAATG
GATGCCCACGCTGTTATATGCTACTTCTTTGTCGTGGGCAGGGGAAAGAA
CGATTAAAATATCGGTATTGTAATACGTGTTGCTTTCACTCTCACGTCCT
CCCCCCACCTTCCCTCCCTCCCTCTTTTGAATAGTTACGGTGTCGACTGC
CTCATGCTCCGGTACGCGGGCATTGACTGGCTTGCCTTGGACCCGCCAGA
GTGCAATGGAATGCGAAACCCTTATTTGACGTTGTTCAATGATGGGATGA
ATCAAAATCCTTTGGAAGTGGTGTTCGTAAAGGTGAAGCCTCATATATTG
GCGTCGGATCACATCCTTCAACGGTTTTCGGATTATATTTTGGGGCGAGA
CGAGGATTTGAAAAGCAGTGGCTTATATACCCAAGTGATGCAGAATGTGC
TGAGCTACCGCAGGGAGAAACTTGCGAGAATGGTAGAGGATTGTCATGCT
TCGTTTGATCATGAGAGCTTCATAGCTCAGCATCCTGAACTGGGAAAAGA
GACTCCTCAAGCAAGATATGAGACTTTTTTGCGATCCCATTTATTTTCAG
GGAAACCGTATCGTTTTTCTGTCCCGCAAACGCGGAAGGGGGATGTGACG
CCTTACTATTGTGAGTCGTTTGTGTCTTATGGAGCGCCAGATTTTTTCGG
GTAG
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Coding sequence (CDS) from alignment at scaffold_3:777768..779321-

>mRNA_314 ID=mRNA_314|Name=jgi.p|Nanoce1779_2|524125|organism=Nannochloropsis oceanica|type=CDS|length=3447bp|location=Sequence derived from alignment at scaffold_3:777768..779321- (Nannochloropsis oceanica)
TTACGGTGTCGACTGCCTCATGCTCCGGTACGCGGGCATTGACTGGCTTG
CCTTGGACCCGCCAGAGTGCAATGGAATGCGAAACCCTTATTTGACGTTG
TTCAATGATGGGATGAATCAAAATCCTTTGGAAGTGGTGTTCGTAAAGGT
GAAGCCTCATATATTGGCGTCGGATCACATCCTTCAACGGTTTTCGGATT
ATATTTTGGGGCGAGACGAGGATTTGAAAAGCAGTGGCTTATATACCCAA
GTGATGCAGAATGTGCTGAGCTACCGCAGGGAGAAACTTGCGAGAATGGT
AGAGGATTGTCATGCTTCGTTTGATCATGAGAGCTTCATAGCTCAGCATC
CTGAACTGGGAAAAGAGACTCCTCAAGCAAGATATGAGACTTTTTTGCGA
TCCCATTTATTTTCAGGGAAACCGTATCGTTTTTCTGTCCCGCAAACGCG
GAAGGGGGATGTGACGCCTTACTATTGTGAGTCGTTTGTGTCTTATGGAG
CGCCAGATTTTTTCGGGTAGGCCGGCGTTGGGGACGTAGAAGATCCACTG
ACAGATTACGTCATTATTGTCAATGGCGAGGCCGCCATTGACCTGGACGG
TCTCCCGTCCAACGTCATGGTGGTCCGTCGCGGCAACACCTGCTATGACG
GTGGCACGGCTGGGGAAGTTCTCGCAGGGATGGACATTAAGCCCTATCAA
TTCTTTTTCTTCATAAACAGCTCCGTCCGCGGGCCTTTCCTTCCTTCCTA
CTTCCCGCAATCGACGGGCGGAGGCCTGGGAGCAGCTTCTTCGGTGCACT
CGTCGGCGCGGCGATGGACGACGGCATTCACGGATTTATTAAACAGTCAT
GTAAAGTTGGTCGGAACGACGATAAATTGCGAGATTCGCGTGCATGTTCA
ATCAATGCTGTTGGCCACAGACAGGGTGGGCATGGAGCTGTTGTTGAAGT
CCGGAGCGTTGGATTGCGCGGAGAATAGGGAGGATGCAATTATGAAATAT
GAGTTAGGCGCGAGTGCCGTGATTATGGAAAATGGATGCAGGCGCACGAG
AAAGGTTCTACTTCGGGGGGCCCTTACAAGACGCTGGTTTTGTATGTCTA
CCATGAAAGCGACGAGGTTACCAAGGATAATCTGCTATTTTTCCTTAAGT
TACGGTGTCGACTGCCTCATGCTCCGGTACGCGGGCATTGACTGGCTTGC
CTTGGACCCGCCAGAGTGCAATGGAATGCGAAACCCTTATTTGACGTTGT
TCAATGATGGGATGAATCAAAATCCTTTGGAAGTGGTGTTCGTAAAGGTG
AAGCCTCATATATTGGCGTCGGATCACATCCTTCAACGGTTTTCGGATTA
TATTTTGGGGCGAGACGAGGATTTGAAAAGCAGTGGCTTATATACCCAAG
TGATGCAGAATGTGCTGAGCTACCGCAGGGAGAAACTTGCGAGAATGGTA
GAGGATTGTCATGCTTCGTTTGATCATGAGAGCTTCATAGCTCAGCATCC
TGAACTGGGAAAAGAGACTCCTCAAGCAAGATATGAGACTTTTTTGCGAT
CCCATTTATTTTCAGGGAAACCGTATCGTTTTTCTGTCCCGCAAACGCGG
AAGGGGGATGTGACGCCTTACTATTGTGAGTCGTTTGTGTCTTATGGAGC
GCCAGATTTTTTCGGGTAGGCCGGCGTTGGGGACGTAGAAGATCCACTGA
CAGATTACGTCATTATTGTCAATGGCGAGGCCGCCATTGACCTGGACGGT
CTCCCGTCCAACGTCATGGTGGTCCGTCGCGGCAACACCTGCTATGACGG
TGGCACGGCTGGGGAAGTTCTCGCAGGGATGGACATTAAGCCCTATCAAT
TCTTTTTCTTCATAAACAGCTCCGTCCGCGGGCCTTTCCTTCCTTCCTAC
TTCCCGCAATCGACGGGCGGAGGCCTGGGAGCAGCTTCTTCGGTGCACTC
GTCGGCGCGGCGATGGACGACGGCATTCACGGATTTATTAAACAGTCATG
TAAAGTTGGTCGGAACGACGATAAATTGCGAGATTCGCGTGCATGTTCAA
TCAATGCTGTTGGCCACAGACAGGGTGGGCATGGAGCTGTTGTTGAAGTC
CGGAGCGTTGGATTGCGCGGAGAATAGGGAGGATGCAATTATGAAATATG
AGTTAGGCGCGAGTGCCGTGATTATGGAAAATGGATGCAGGCGCACGAGA
AAGGTTCTACTTCGGGGGGCCCTTACAAGACGCTGGTTTTGTATGTCTAC
CATGAAAGCGACGAGGTTACCAAGGATAATCTGCTATTTTTCCTTAAGTT
ACGGTGTCGACTGCCTCATGCTCCGGTACGCGGGCATTGACTGGCTTGCC
TTGGACCCGCCAGAGTGCAATGGAATGCGAAACCCTTATTTGACGTTGTT
CAATGATGGGATGAATCAAAATCCTTTGGAAGTGGTGTTCGTAAAGGTGA
AGCCTCATATATTGGCGTCGGATCACATCCTTCAACGGTTTTCGGATTAT
ATTTTGGGGCGAGACGAGGATTTGAAAAGCAGTGGCTTATATACCCAAGT
GATGCAGAATGTGCTGAGCTACCGCAGGGAGAAACTTGCGAGAATGGTAG
AGGATTGTCATGCTTCGTTTGATCATGAGAGCTTCATAGCTCAGCATCCT
GAACTGGGAAAAGAGACTCCTCAAGCAAGATATGAGACTTTTTTGCGATC
CCATTTATTTTCAGGGAAACCGTATCGTTTTTCTGTCCCGCAAACGCGGA
AGGGGGATGTGACGCCTTACTATTGTGAGTCGTTTGTGTCTTATGGAGCG
CCAGATTTTTTCGGGTAGGCCGGCGTTGGGGACGTAGAAGATCCACTGAC
AGATTACGTCATTATTGTCAATGGCGAGGCCGCCATTGACCTGGACGGTC
TCCCGTCCAACGTCATGGTGGTCCGTCGCGGCAACACCTGCTATGACGGT
GGCACGGCTGGGGAAGTTCTCGCAGGGATGGACATTAAGCCCTATCAATT
CTTTTTCTTCATAAACAGCTCCGTCCGCGGGCCTTTCCTTCCTTCCTACT
TCCCGCAATCGACGGGCGGAGGCCTGGGAGCAGCTTCTTCGGTGCACTCG
TCGGCGCGGCGATGGACGACGGCATTCACGGATTTATTAAACAGTCATGT
AAAGTTGGTCGGAACGACGATAAATTGCGAGATTCGCGTGCATGTTCAAT
CAATGCTGTTGGCCACAGACAGGGTGGGCATGGAGCTGTTGTTGAAGTCC
GGAGCGTTGGATTGCGCGGAGAATAGGGAGGATGCAATTATGAAATATGA
GTTAGGCGCGAGTGCCGTGATTATGGAAAATGGATGCAGGCGCACGAGAA
AGGTTCTACTTCGGGGGGCCCTTACAAGACGCTGGTTTTGTATGTCTACC
ATGAAAGCGACGAGGTTACCAAGGATAATCTGCTATTTTTCCTTAAG
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Synonyms
Publications