jgi.p|Nanoce1779_2|664512, mRNA_3138 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|664512
Unique NamemRNA_3138
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1301
Alignment locationscaffold_7:745385..746906 -

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Properties
Property NameValue
TranscriptId664598
TrackFilteredModels2
ProteinId664512
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:745385..746906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664512gene_3138Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664512mRNA_3138-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3138CDS_3138Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3138 ID=mRNA_3138|Name=jgi.p|Nanoce1779_2|664512|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
AGGGACGCAGAGGCGGTGACGCAGGAGATGCGTGAAGATATAATGGAGCT
GTTAAACCTTTTTGGGGTGCCCTACCTGGTGGCACCGATGGAGGCGGAGG
CCCAGTGTGCTGTCCTGGAGCGGTTAGGGTTGGTGGATGGTGTGGTGAGC
GACGACAGTGACTCTTTCTTATTTGGCGCGAAGTTCGTGTACAAAAACAT
TTTTGACGAAAAAAAGTACGTGGAAGCGTTTAGAGCAGAAGATGTGGAGA
GGGAGCTAGGCTTGCGAAGGGTTGATTTGGTGTCACTGGCGTTGTTGCTG
GGTAGTGACTACACGGAGGGAGTGAAGGGGGTGGGAATTGTAAATGCCAC
GGAAGTAGTTCGGGCGTTTGCGTCTGGAAGAAGAGGGGAGGAGACAGGGC
CCCCGGAAGAGGGATTGAAACATTTTAGGGATTGGTTGGATGGATTTAAC
CCGCTTGATGATTTGAAGGAGCAGGCATGGAAGAAGAAGAAGAGGAAGAA
GAAGAAGGGGGGGAAGGGAGGGAAGGAGGTGGAGGCTTTCCACAGGAAGC
ACAAAAGTGCCCGGACGAGGTGGATTGTGGATGAGCGTTTCCCAGACCCG
GCTATCTATAAGGCATATTTACACCCGCAGGTTAATCGGAGCACGGCGGA
ATTCACGTGGGACATGCCTGATTTGGATCGGTTGCGCGTATACTTGGCGC
GAAAATTAGGCTGGCTTGTGAGTGAGACGGATGAGCACTTACTGCCGATG
TTGAAGAGGATGGGGGAGACCGTGGGGATACAGAGAAGGTTAGATTCTTA
CTTTCTGAGCTACAAGGATAATGTAACGTTTGCCAAGATCAAGAGTAGGA
GGTTGAGAGAGGCGGTGAAGGAGTTGAGGGGAGGGGGAGGAAGTGGAGGC
GGGGGGATTGAAGAAGAGAAGGAGGAGGAAGAGGAGCAAAAAAGAGGCCA
GGGGAGGGAAGAAGAAGGTTATAGATGCCAAGACATGGGAAAAGGCCGCG
CCGAAGGAGAAGACGACTAACAGGGTGAAGAGAGGGGAGGGCCAGGTGAG
TTACAGCAGTCGTAGCAGTAGTAGCAGCAGTAGCGAGGAGATGAAAACAG
AGAGAGGGCTAGGAGAGGAAGGAGAAGGAGAGGAAGGAAGAGAAGGAGGG
ACGGAGGAAATTGAGACACAGGAGGCGAGAGTGATAGGAACGAGGAGCTC
GGGCCGCCGTCGTAAGGTGGTAGTCATGGACGAGGAGGAGGAGGAGGAGG
AGGAGGAAGGGGAAGAAAAAAGCGAGTAATATTTTTAAAAAGCATGTTTA
G
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protein sequence of jgi.p|Nanoce1779_2|664512

>mRNA_3138-protein ID=mRNA_3138-protein|Name=jgi.p|Nanoce1779_2|664512|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MREDIMELLNLFGVPYLVAPMEAEAQCAVLERLGLVDGVVSDDSDSFLFG
AKFVYKNIFDEKKYVEAFRAEDVERELGLRRVDLVSLALLLGSDYTEGVK
GVGIVNATEVVRAFASGRRGEETGPPEEGLKHFRDWLDGFNPLDDLKEQA
WKKKKRKKKKGGKGGKEVEAFHRKHKSARTRWIVDERFPDPAIYKAYLHP
QVNRSTAEFTWDMPDLDRLRVYLARKLGWLVSETDEHLLPMLKRMGETVG
IQRRLDSYFLSYKDNVTFAKIKSRRLREAVKELRGGGGSGGGGIEEEKEE
EEEQKRGQGREEEGYRCQDMGKGRAEGEDD*
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mRNA from alignment at scaffold_7:745385..746906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3138 ID=mRNA_3138|Name=jgi.p|Nanoce1779_2|664512|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp|location=Sequence derived from alignment at scaffold_7:745385..746906- (Nannochloropsis oceanica)
AGGGACGCAGAGGCGGTGACGCAGGAGATGCGTGAAGATATAATGGAGCT
GTTAAACCTTTTTGGGGTGCCCTACCTGGTGGCACCGATGGAGGCGGAGG
CCCAGTGTGCTGTCCTGGAGCGGTTAGGGTTGGTGGATGGTGTGGTGAGC
GACGACAGTGACTCTTTCTTATTTGGCGCGAAGTTCGTGTACAAAAACAT
TTTTGACGAAAAAAAGTACGTGGAAGCGTTTAGAGCAGAAGATGTGGAGA
GGGAGCTAGGCTTGCGAAGGGTTGATTTGGTGTCACTGGCGTTGTTGCTG
GGTAGTGACTACACGGAGGGAGTGAAGGGGGTGGGAATTGTAAATGCCAC
GGAAGTAGTTCGGGCGTTTGCGTCTGGAAGAAGAGGGGAGGAGACAGGGC
CCCCGGAAGAGGGATTGAAACATTTTAGGGATTGGTTGGATGGATTTAAC
CCGCTTGATGATTTGAAGGAGCAGGCATGGAAGAAGAAGAAGAGGAAGAA
GAAGAAGGGGGGGAAGGGAGGGAAGGAGGGTGAGAATGAGGAGGAAGGGG
AAGAGGAATTTGAAGATGTCGAGGAGGAGGGAAAGGAGGAGAAGAAAAAA
AAGGAGCCATGGGTCACTGAGGAAGTGGAGGCTTTCCACAGGAAGCACAA
AAGTGCCCGGACGAGGTGGATTGTGGATGAGCGTTTCCCAGACCCGGCTA
TCTATAAGGCATATTTACACCCGCAGGTTAATCGGAGCACGGCGGAATTC
ACGTGGGACATGCCTGATTTGGATCGGTTGCGCGTATACTTGGCGCGAAA
ATTAGGCTGGCTTGTGAGTGAGACGGATGAGCACTTACTGCCGATGTTGA
AGAGGATGGGGGAGACCGTGGGGATACAGAGAAGGTTAGATTCTTACTTT
CTGAGCTACAAGGATAATGTAACGTTTGCCAAGATCAAGAGTAGGAGGTT
GAGAGAGGCGGTGAAGGAGTTGAGGGGAGGGGGAGGAAGTGGAGGCGGGG
GGATTGAAGAAGAGAAGGAGGAGGAAGAGGAGCAAAAAAGAGGCCATGGA
GGAGGGAAGAAGATTGAAGACGCTGGCGGAGGGGGGGGGGAAGAGGGGGC
TGAGGGTGAAAGTTGGAAGAGGAATGTGGGTGAAAAAGATAAGAGGGGGG
TACAAGCAGGGGAACGGGACAGGGGAGGGAAGAAGAAGGTTATAGATGCC
AAGACATGGGAAAAGGCCGCGCCGAAGGAGAAGACGACTAACAGGGTGAA
GAGAGGGGAGGGCCAGGTGAGTTACAGCAGTCGTAGCAGTAGTAGCAGCA
GTAGCGAGGAGATGAAAACAGAGAGAGGGCTAGGAGAGGAAGGAGAAGGA
GAGGAAGGAAGAGAAGGAGGGACGGAGGAAATTGAGACACAGGAGGCGAG
AGTGATAGGAACGAGGAGCTCGGGCCGCCGTCGTAAGGTGGTAGTCATGG
ACGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGGAAGAAAAAAGCGAGTAA
TATTTTTAAAAAGCATGTTTAG
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Coding sequence (CDS) from alignment at scaffold_7:745385..746906-

>mRNA_3138 ID=mRNA_3138|Name=jgi.p|Nanoce1779_2|664512|organism=Nannochloropsis oceanica|type=CDS|length=2979bp|location=Sequence derived from alignment at scaffold_7:745385..746906- (Nannochloropsis oceanica)
AGGGGAGGGAAGAAGAAGGTTATAGATGCCAAGACATGGGAAAAGGCCGC
GCCGAAGGAGAAGACGACTAATGGAGGCTTTCCACAGGAAGCACAAAAGT
GCCCGGACGAGGTGGATTGTGGATGAGCGTTTCCCAGACCCGGCTATCTA
TAAGGCATATTTACACCCGCAGGTTAATCGGAGCACGGCGGAATTCACGT
GGGACATGCCTGATTTGGATCGGTTGCGCGTATACTTGGCGCGAAAATTA
GGCTGGCTTGTGAGTGAGACGGATGAGCACTTACTGCCGATGTTGAAGAG
GATGGGGGAGACCGTGGGGATACAGAGAAGGTTAGATTCTTACTTTCTGA
GCTACAAGGATAATGTAACGTTTGCCAAGATCAAGAGTAGGAGGTTGAGA
GAGGCGGTGAAGGAGTTGAGGGGAGGGGGAGGAAGTGGAGGCGGGGGGAT
TGAAGAAGAGAAGGAGGAGGAAGAGGAGCAAAAAAGAGGCCATGCGTGAA
GATATAATGGAGCTGTTAAACCTTTTTGGGGTGCCCTACCTGGTGGCACC
GATGGAGGCGGAGGCCCAGTGTGCTGTCCTGGAGCGGTTAGGGTTGGTGG
ATGGTGTGGTGAGCGACGACAGTGACTCTTTCTTATTTGGCGCGAAGTTC
GTGTACAAAAACATTTTTGACGAAAAAAAGTACGTGGAAGCGTTTAGAGC
AGAAGATGTGGAGAGGGAGCTAGGCTTGCGAAGGGTTGATTTGGTGTCAC
TGGCGTTGTTGCTGGGTAGTGACTACACGGAGGGAGTGAAGGGGGTGGGA
ATTGTAAATGCCACGGAAGTAGTTCGGGCGTTTGCGTCTGGAAGAAGAGG
GGAGGAGACAGGGCCCCCGGAAGAGGGATTGAAACATTTTAGGGATTGGT
TGGATGGATTTAACCCGCTTGATGATTTGAAGGAGCAGGCATGGAAGAAG
AAGAAGAGGAAGAAGAAGAAGGGGGGGAAGGGAGGGAAGGAGGAGGGGAG
GGAAGAAGAAGGTTATAGATGCCAAGACATGGGAAAAGGCCGCGCCGAAG
GAGAAGACGACTAATGGAGGCTTTCCACAGGAAGCACAAAAGTGCCCGGA
CGAGGTGGATTGTGGATGAGCGTTTCCCAGACCCGGCTATCTATAAGGCA
TATTTACACCCGCAGGTTAATCGGAGCACGGCGGAATTCACGTGGGACAT
GCCTGATTTGGATCGGTTGCGCGTATACTTGGCGCGAAAATTAGGCTGGC
TTGTGAGTGAGACGGATGAGCACTTACTGCCGATGTTGAAGAGGATGGGG
GAGACCGTGGGGATACAGAGAAGGTTAGATTCTTACTTTCTGAGCTACAA
GGATAATGTAACGTTTGCCAAGATCAAGAGTAGGAGGTTGAGAGAGGCGG
TGAAGGAGTTGAGGGGAGGGGGAGGAAGTGGAGGCGGGGGGATTGAAGAA
GAGAAGGAGGAGGAAGAGGAGCAAAAAAGAGGCCATGCGTGAAGATATAA
TGGAGCTGTTAAACCTTTTTGGGGTGCCCTACCTGGTGGCACCGATGGAG
GCGGAGGCCCAGTGTGCTGTCCTGGAGCGGTTAGGGTTGGTGGATGGTGT
GGTGAGCGACGACAGTGACTCTTTCTTATTTGGCGCGAAGTTCGTGTACA
AAAACATTTTTGACGAAAAAAAGTACGTGGAAGCGTTTAGAGCAGAAGAT
GTGGAGAGGGAGCTAGGCTTGCGAAGGGTTGATTTGGTGTCACTGGCGTT
GTTGCTGGGTAGTGACTACACGGAGGGAGTGAAGGGGGTGGGAATTGTAA
ATGCCACGGAAGTAGTTCGGGCGTTTGCGTCTGGAAGAAGAGGGGAGGAG
ACAGGGCCCCCGGAAGAGGGATTGAAACATTTTAGGGATTGGTTGGATGG
ATTTAACCCGCTTGATGATTTGAAGGAGCAGGCATGGAAGAAGAAGAAGA
GGAAGAAGAAGAAGGGGGGGAAGGGAGGGAAGGAGGAGGGGAGGGAAGAA
GAAGGTTATAGATGCCAAGACATGGGAAAAGGCCGCGCCGAAGGAGAAGA
CGACTAATGGAGGCTTTCCACAGGAAGCACAAAAGTGCCCGGACGAGGTG
GATTGTGGATGAGCGTTTCCCAGACCCGGCTATCTATAAGGCATATTTAC
ACCCGCAGGTTAATCGGAGCACGGCGGAATTCACGTGGGACATGCCTGAT
TTGGATCGGTTGCGCGTATACTTGGCGCGAAAATTAGGCTGGCTTGTGAG
TGAGACGGATGAGCACTTACTGCCGATGTTGAAGAGGATGGGGGAGACCG
TGGGGATACAGAGAAGGTTAGATTCTTACTTTCTGAGCTACAAGGATAAT
GTAACGTTTGCCAAGATCAAGAGTAGGAGGTTGAGAGAGGCGGTGAAGGA
GTTGAGGGGAGGGGGAGGAAGTGGAGGCGGGGGGATTGAAGAAGAGAAGG
AGGAGGAAGAGGAGCAAAAAAGAGGCCATGCGTGAAGATATAATGGAGCT
GTTAAACCTTTTTGGGGTGCCCTACCTGGTGGCACCGATGGAGGCGGAGG
CCCAGTGTGCTGTCCTGGAGCGGTTAGGGTTGGTGGATGGTGTGGTGAGC
GACGACAGTGACTCTTTCTTATTTGGCGCGAAGTTCGTGTACAAAAACAT
TTTTGACGAAAAAAAGTACGTGGAAGCGTTTAGAGCAGAAGATGTGGAGA
GGGAGCTAGGCTTGCGAAGGGTTGATTTGGTGTCACTGGCGTTGTTGCTG
GGTAGTGACTACACGGAGGGAGTGAAGGGGGTGGGAATTGTAAATGCCAC
GGAAGTAGTTCGGGCGTTTGCGTCTGGAAGAAGAGGGGAGGAGACAGGGC
CCCCGGAAGAGGGATTGAAACATTTTAGGGATTGGTTGGATGGATTTAAC
CCGCTTGATGATTTGAAGGAGCAGGCATGGAAGAAGAAGAAGAGGAAGAA
GAAGAAGGGGGGGAAGGGAGGGAAGGAGG
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Synonyms
Publications