jgi.p|Nanoce1779_2|584687, mRNA_3135 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584687
Unique NamemRNA_3135
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length745
Alignment locationscaffold_7:739119..740320 +

Link to JBrowse

Properties
Property NameValue
TranscriptId584773
TrackFilteredModels2
ProteinId584687
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:739119..740320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584687gene_3135Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584687mRNA_3135-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3135CDS_3135Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3135 ID=mRNA_3135|Name=jgi.p|Nanoce1779_2|584687|organism=Nannochloropsis oceanica|type=mRNA|length=745bp
AGACCTCTTCGTTCGCTTCAACGCAAGCCACCATGGTCTCAAGAAGCAGT
AAGTCCAAAAGCCTCCAGGTCCTGGTGATGCTGGTCCTCGCCTCCCTTAT
CCACACGTCCTCAGCCGCCATGGGCATGTCCCCGGGCCTGTTTTGCACCG
TCCGTGGTGGAACACAACAGCCATCCGCCTTTCAACGCCTCATGAGCGTC
CGGGGTGGCATGCAGATTAATGTCAAGACTCTGAACGGTAAGACCATTTC
GGTGGATGTGGAAGAGGGTGATAGCATTGATGAAGTCAAGGCCAAAATTG
CTGAGAAGGAGGGAATCCCCCCTGACCAGCAACGTCTTATTTTTGGGGGA
AAACAGCTGGATGGGCTGAAAAGCCTATCTGATTATGATATTGGTGACGA
TTCAACGTTGCATTTGGTGTTGCGATTGCGTGGGGGATGGGCATTTGGAC
GGTGAAGAGAAGGGGGATTGCTTTGCACATACGTGTTCGTGAGAGGTAGT
GGAGGACCAGCCGGGTGAAATAAGAAAACGAGAAAAAGAAGAAACGAAGA
AACAAAGAAATAAAACAGACAAGGCGCAAGAGAAAAAGAGAAAAAGAGAG
AGATCGGCGGTGAAATGTTACGGAGAGTAAAAGTGTGCATGTGAAAGCAC
TCGGACAAGCATTCCTCCTTCGACATTTTCTTCATTTTTAATCGCGTGTG
AGTGCATGTTGCGTTGTGCACTGCAAACGTCAAAATAAATTGGGA
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protein sequence of jgi.p|Nanoce1779_2|584687

>mRNA_3135-protein ID=mRNA_3135-protein|Name=jgi.p|Nanoce1779_2|584687|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MVSRSSKSKSLQVLVMLVLASLIHTSSAAMGMSPGLFCTVRGGTQQPSAF
QRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQ
RLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWAFGR*
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mRNA from alignment at scaffold_7:739119..740320+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3135 ID=mRNA_3135|Name=jgi.p|Nanoce1779_2|584687|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp|location=Sequence derived from alignment at scaffold_7:739119..740320+ (Nannochloropsis oceanica)
AGACCTCTTCGTTCGCTTCAACGCAAGCCACCATGGTCTCAAGAAGCAGT
AAGTCCAAAAGCCTCCAGGTCCTGGTGATGCTGGTCCTCGCCTCCCTTAT
CCACACGTCCTCAGCCGCCATGGGCATGTCCCCGGGCCTGTTTTGCACCG
TCCGTGGTGGAACACAACAGCCATCCGCCTTTCAACGCCTCATGAGCGTC
CGGGGTGGCATGCAGGTACGTCATGTGCCTTGTTGGGTGGATTGGAGAGG
AGGAAAAGGGAGGGAGGACGGGGCTGGGGCAAGGGATGGGCTGGGGCAGA
CCCGGTTGAGAGTGTATGCGGAGAGTAAGCAAATGGCTGTGTACATCAAC
ACATTATCTTAGGTCATGTGATGATGACCAGGGAGGGTTGTGGTTGGCTC
CGCGGGACGCAGGCTCAGGATCAGTGCACATTTGGTATGGCATCATCACA
TGCAACATACGAGAGAAAGGCACATATGGATCTGAATGGAGGAAATTCTG
CGCGGCAGGTTAAGAACTCAAAACGTGGCTGCTGTGGTCTGTTTCACACC
CCACTTCGCATCCATCGATGACCTTTTGAACCCTTAGAATCCTTGTCTTC
CACGTCCACCCATATGCCCCGTCCCTCCTATCTCAACCCCTCCCCCTCCT
TCTCTCTCCCCTTGCCCCATAGATTAATGTCAAGACTCTGAACGGTAAGA
CCATTTCGGTGGATGTGGAAGAGGGTGATAGCATTGATGAAGTCAAGGCC
AAAATTGCTGAGAAGGAGGGAATCCCCCCTGACCAGCAACGTCTTATTTT
TGGGGGAAAACAGCTGGATGGGCTGAAAAGCCTATCTGATTATGATATTG
GTGACGATTCAACGTTGCATTTGGTGTTGCGATTGCGTGGGGGATGGGCA
TTTGGACGGTGAAGAGAAGGGGGATTGCTTTGCACATACGTGTTCGTGAG
AGGTAGTGGAGGACCAGCCGGGTGAAATAAGAAAACGAGAAAAAGAAGAA
ACGAAGAAACAAAGAAATAAAACAGACAAGGCGCAAGAGAAAAAGAGAAA
AAGAGAGAGATCGGCGGTGAAATGTTACGGAGAGTAAAAGTGTGCATGTG
AAAGCACTCGGACAAGCATTCCTCCTTCGACATTTTCTTCATTTTTAATC
GCGTGTGAGTGCATGTTGCGTTGTGCACTGCAAACGTCAAAATAAATTGG
GA
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Coding sequence (CDS) from alignment at scaffold_7:739119..740320+

>mRNA_3135 ID=mRNA_3135|Name=jgi.p|Nanoce1779_2|584687|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_7:739119..740320+ (Nannochloropsis oceanica)
ATGGTCTCAAGAAGCAGTAAGTCCAAAAGCCTCCAGGTCCTGGTGATGCT
GGTCCTCGCCTCCCTTATCCACACGTCCTCAGCCGCCATGGGCATGTCCC
CGGGCCTGTTTTGCACCGTCCGTGGTGGAACACAACAGCCATCCGCCTTT
CAACGCCTCATGAGCGTCCGGGGTGGCATGCAGATTAATGTCAAGACTCT
GAACGGTAAGACCATTTCGGTGGATGTGGAAGAGGGTGATAGCATTGATG
AAGTCAAGGCCAAAATTGCTGAGAAGGAGGGAATCCCCCCTGACCAGCAA
CGTCTTATTTTTGGGGGAAAACAGCTGGATGGGCTGAAAAGCCTATCTGA
TTATGATATTGGTGACGATTCAACGTTGCATTTGGTGTTGCGATTGCGTG
GGGGATGGGCATTTGGACGGTGAATGGTCTCAAGAAGCAGTAAGTCCAAA
AGCCTCCAGGTCCTGGTGATGCTGGTCCTCGCCTCCCTTATCCACACGTC
CTCAGCCGCCATGGGCATGTCCCCGGGCCTGTTTTGCACCGTCCGTGGTG
GAACACAACAGCCATCCGCCTTTCAACGCCTCATGAGCGTCCGGGGTGGC
ATGCAGATTAATGTCAAGACTCTGAACGGTAAGACCATTTCGGTGGATGT
GGAAGAGGGTGATAGCATTGATGAAGTCAAGGCCAAAATTGCTGAGAAGG
AGGGAATCCCCCCTGACCAGCAACGTCTTATTTTTGGGGGAAAACAGCTG
GATGGGCTGAAAAGCCTATCTGATTATGATATTGGTGACGATTCAACGTT
GCATTTGGTGTTGCGATTGCGTGGGGGATGGGCATTTGGACGGTGA
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Synonyms
Publications