jgi.p|Nanoce1779_2|638262, mRNA_3134 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|638262
Unique NamemRNA_3134
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1299
Alignment locationscaffold_7:737204..738631 -

Link to JBrowse

Properties
Property NameValue
TranscriptId638348
TrackFilteredModels2
ProteinId638262
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:737204..738631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638262gene_3134Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638262mRNA_3134-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3134CDS_3134Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3134 ID=mRNA_3134|Name=jgi.p|Nanoce1779_2|638262|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
ATGGAACCCTCCTCCGACCCGTCCTCCCCCTCTCCCCCTTTCTTCTCCTG
GCGACAGCGCATCACACTTCTCACCCAAAAAGAAGCTCAAGCCATAGACG
AAGAGTTAATGAGCACTCCTGGTTTCTCCGTCGATCAACTAATGGAGCTA
GCAGGCTTGTCGGTCTCCCATGCTGTCGACCACTTCCTCCAACAACCCGC
CCGGTCTGCCTCCATCCTCATTCTCTGCGGGCCGGGAAATAACGGAGGCG
ATGGTCTAGTGGCTGCGCGTCATTTGTTTCATCTTGGGTACTGTCCTGTG
GTTGTCTATCCGAAGCGATCGAACAAGCCTTTGTTCGTCAACTTGGTCAA
GCAGTGCGAGGACCTGGGGGTGGAGGTGGGGGTGGAACTCCCAGGGGATA
TCGAGGGCAGGTTCGATTGTGTCATAGATGCCTTGTTTGGCTTCGGAACG
AAGGGGGCATTACGGGCGCCATTCGATGCGATCATGCAGAGGCTAACCGA
GATTACTACGCCCATTGTGTCGGTGGATATCCCGTCAGGGTGGGATGTCG
AGCAAGGCGACGTCTATCACACTAGCTTCATGCCCGAGGCCCTCGTCTCC
CTCACGGCGCCCAAAAGATGCGCTGCATTCTTCCGGGGCCGCCACTACCT
AGGCGGACGCTTCGTGCCTCCTAAAATGAAGGTTCAATACCGCTTGGATG
AAGAGCATTTGCCGGCGTATCAGGGCATCCGTCAATTTGTCGAGATCGAG
GGCTGGGACGAGGAAGGGGCCGAGGGAGGGGGGGAGAGAGGGACAGGCGG
CGAGGACATAATCCACAAGTCCTTGACTCCCACGCCAGTGTTCCTCCCTC
CCTCTTCCATCTCCACCGCTACTCCATCTGATGAGGCCACAGGACGCACC
AGCGGTCCAACTCACACAGGCACGAGCACGGGGACCACTTCACCCCAACA
CCCTGAGTTTGTCGTTGTCTGGATAACTGCCCCTAACCCCGCCGAAGCAG
CCAAGCTCGCAGAGGGCCTCGTACATCACGACCTGGCGGCATGCGTCAAT
CTGGTGCCTAACATCGAGTCCGTCTACAAATGGGAGGGAAAGGTCGAACG
AAGTGGAGAGGTATTGATGATGGCAAAAACACGGGGGAGCCTGTTAGGTG
AGCTGTCAGCGTTTGTCCTCAAGCATCATTCCTATGAAGTGCCCGAGACG
ATAGCGGCAGGCATTGTAGGAGGGGGGGATGAATATCTTCAATGGTTGCG
CGATAGCACTCGAAAGCCAAAGGAGGAAGCGGGGAGGGAAGTGAAATGA
back to top

protein sequence of jgi.p|Nanoce1779_2|638262

>mRNA_3134-protein ID=mRNA_3134-protein|Name=jgi.p|Nanoce1779_2|638262|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MEPSSDPSSPSPPFFSWRQRITLLTQKEAQAIDEELMSTPGFSVDQLMEL
AGLSVSHAVDHFLQQPARSASILILCGPGNNGGDGLVAARHLFHLGYCPV
VVYPKRSNKPLFVNLVKQCEDLGVEVGVELPGDIEGRFDCVIDALFGFGT
KGALRAPFDAIMQRLTEITTPIVSVDIPSGWDVEQGDVYHTSFMPEALVS
LTAPKRCAAFFRGRHYLGGRFVPPKMKVQYRLDEEHLPAYQGIRQFVEIE
GWDEEGAEGGGERGTGGEDIIHKSLTPTPVFLPPSSISTATPSDEATGRT
SGPTHTGTSTGTTSPQHPEFVVVWITAPNPAEAAKLAEGLVHHDLAACVN
LVPNIESVYKWEGKVERSGEVLMMAKTRGSLLGELSAFVLKHHSYEVPET
IAAGIVGGGDEYLQWLRDSTRKPKEEAGREVK*
back to top

mRNA from alignment at scaffold_7:737204..738631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3134 ID=mRNA_3134|Name=jgi.p|Nanoce1779_2|638262|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp|location=Sequence derived from alignment at scaffold_7:737204..738631- (Nannochloropsis oceanica)
ATGGAACCCTCCTCCGACCCGTCCTCCCCCTCTCCCCCTTTCTTCTCCTG
GCGACAGCGCATCACACTTCTCACCCAAAAAGAAGCTCAAGCCATAGACG
AAGAGTTAATGAGCACTCCTGGTTTCTCCGTCGATCAACTAATGGAGCTA
GCAGGCTTGTCGGTCTCCCATGCTGTCGACCACTTCCTCCAACAACCCGC
CCGGTCTGCCTCCATCCTCATTCTCTGCGGGCCGGGAAATAACGGAGGCG
ATGGTCTAGTGGCTGCGCGTCATTTGTTTCATCTTGGGTACTGTCCTGTG
GTTGTCTATCCGAAGCGATCGAACAAGCCTTTGTTCGTCAACTTGGTCAA
GCAGTGCGAGGACCTGGGGGTGGAGGTGGGGGTGGAACTCCCAGGGGATA
TCGAGGGCAGGTTCGATTGTGTCATAGATGCCTTGTTTGGCTTCGGAACG
AAGGGGGCATTACGGGCGCCATTCGATGCGATCATGCAGAGGCTAACCGA
GATTACTACGCCCATTGTGTCGGTGGATATCCCGTCAGGTAATGAGGGAA
GGAGGGAGGGAGGAAGGGAGAGGAGGGAGGGAGGGCCATGGCATTCAGTC
ACACCTACTCATTAACAAATCGTTCAACCCACCTTTAATTCTCCGAACCA
CCATGTCAATTATGCAGGGTGGGATGTCGAGCAAGGCGACGTCTATCACA
CTAGCTTCATGCCCGAGGCCCTCGTCTCCCTCACGGCGCCCAAAAGATGC
GCTGCATTCTTCCGGGGCCGCCACTACCTAGGCGGACGCTTCGTGCCTCC
TAAAATGAAGGTTCAATACCGCTTGGATGAAGAGCATTTGCCGGCGTATC
AGGGCATCCGTCAATTTGTCGAGATCGAGGGCTGGGACGAGGAAGGGGCC
GAGGGAGGGGGGGAGAGAGGGACAGGCGGCGAGGACATAATCCACAAGTC
CTTGACTCCCACGCCAGTGTTCCTCCCTCCCTCTTCCATCTCCACCGCTA
CTCCATCTGATGAGGCCACAGGACGCACCAGCGGTCCAACTCACACAGGC
ACGAGCACGGGGACCACTTCACCCCAACACCCTGAGTTTGTCGTTGTCTG
GATAACTGCCCCTAACCCCGCCGAAGCAGCCAAGCTCGCAGAGGGCCTCG
TACATCACGACCTGGCGGCATGCGTCAATCTGGTGCCTAACATCGAGTCC
GTCTACAAATGGGAGGGAAAGGTCGAACGAAGTGGAGAGGTATTGATGAT
GGCAAAAACACGGGGGAGCCTGTTAGGTGAGCTGTCAGCGTTTGTCCTCA
AGCATCATTCCTATGAAGTGCCCGAGACGATAGCGGCAGGCATTGTAGGA
GGGGGGGATGAATATCTTCAATGGTTGCGCGATAGCACTCGAAAGCCAAA
GGAGGAAGCGGGGAGGGAAGTGAAATGA
back to top

Coding sequence (CDS) from alignment at scaffold_7:737204..738631-

>mRNA_3134 ID=mRNA_3134|Name=jgi.p|Nanoce1779_2|638262|organism=Nannochloropsis oceanica|type=CDS|length=2598bp|location=Sequence derived from alignment at scaffold_7:737204..738631- (Nannochloropsis oceanica)
GGTGGGATGTCGAGCAAGGCGACGTCTATCACACTAGCTTCATGCCCGAG
GCCCTCGTCTCCCTCACGGCGCCCAAAAGATGCGCTGCATTCTTCCGGGG
CCGCCACTACCTAGGCGGACGCTTCGTGCCTCCTAAAATGAAGGTTCAAT
ACCGCTTGGATGAAGAGCATTTGCCGGCGTATCAGGGCATCCGTCAATTT
GTCGAGATCGAGGGCTGGGACGAGGAAGGGGCCGAGGGAGGGGGGGAGAG
AGGGACAGGCGGCGAGGACATAATCCACAAGTCCTTGACTCCCACGCCAG
TGTTCCTCCCTCCCTCTTCCATCTCCACCGCTACTCCATCTGATGAGGCC
ACAGGACGCACCAGCGGTCCAACTCACACAGGCACGAGCACGGGGACCAC
TTCACCCCAACACCCTGAGTTTGTCGTTGTCTGGATAACTGCCCCTAACC
CCGCCGAAGCAGCCAAGCTCGCAGAGGGCCTCGTACATCACGACCTGGCG
GCATGCGTCAATCTGGTGCCTAACATCGAGTCCGTCTACAAATGGGAGGG
AAAGGTCGAACGAAGTGGAGAGGTATTGATGATGGCAAAAACACGGGGGA
GCCTGTTAGGTGAGCTGTCAGCGTTTGTCCTCAAGCATCATTCCTATGAA
GTGCCCGAGACGATAGCGGCAGGCATTGTAGGAGGGGGGGATGAATATCT
TCAATGGTTGCGCGATAGCACTCGAAAGCCAAAGGAGGAAGCGGGGAGGG
AAGTGAAATGAATGGAACCCTCCTCCGACCCGTCCTCCCCCTCTCCCCCT
TTCTTCTCCTGGCGACAGCGCATCACACTTCTCACCCAAAAAGAAGCTCA
AGCCATAGACGAAGAGTTAATGAGCACTCCTGGTTTCTCCGTCGATCAAC
TAATGGAGCTAGCAGGCTTGTCGGTCTCCCATGCTGTCGACCACTTCCTC
CAACAACCCGCCCGGTCTGCCTCCATCCTCATTCTCTGCGGGCCGGGAAA
TAACGGAGGCGATGGTCTAGTGGCTGCGCGTCATTTGTTTCATCTTGGGT
ACTGTCCTGTGGTTGTCTATCCGAAGCGATCGAACAAGCCTTTGTTCGTC
AACTTGGTCAAGCAGTGCGAGGACCTGGGGGTGGAGGTGGGGGTGGAACT
CCCAGGGGATATCGAGGGCAGGTTCGATTGTGTCATAGATGCCTTGTTTG
GCTTCGGAACGAAGGGGGCATTACGGGCGCCATTCGATGCGATCATGCAG
AGGCTAACCGAGATTACTACGCCCATTGTGTCGGTGGATATCCCGTCAGG
GTGGGATGTCGAGCAAGGCGACGTCTATCACACTAGCTTCATGCCCGAGG
CCCTCGTCTCCCTCACGGCGCCCAAAAGATGCGCTGCATTCTTCCGGGGC
CGCCACTACCTAGGCGGACGCTTCGTGCCTCCTAAAATGAAGGTTCAATA
CCGCTTGGATGAAGAGCATTTGCCGGCGTATCAGGGCATCCGTCAATTTG
TCGAGATCGAGGGCTGGGACGAGGAAGGGGCCGAGGGAGGGGGGGAGAGA
GGGACAGGCGGCGAGGACATAATCCACAAGTCCTTGACTCCCACGCCAGT
GTTCCTCCCTCCCTCTTCCATCTCCACCGCTACTCCATCTGATGAGGCCA
CAGGACGCACCAGCGGTCCAACTCACACAGGCACGAGCACGGGGACCACT
TCACCCCAACACCCTGAGTTTGTCGTTGTCTGGATAACTGCCCCTAACCC
CGCCGAAGCAGCCAAGCTCGCAGAGGGCCTCGTACATCACGACCTGGCGG
CATGCGTCAATCTGGTGCCTAACATCGAGTCCGTCTACAAATGGGAGGGA
AAGGTCGAACGAAGTGGAGAGGTATTGATGATGGCAAAAACACGGGGGAG
CCTGTTAGGTGAGCTGTCAGCGTTTGTCCTCAAGCATCATTCCTATGAAG
TGCCCGAGACGATAGCGGCAGGCATTGTAGGAGGGGGGGATGAATATCTT
CAATGGTTGCGCGATAGCACTCGAAAGCCAAAGGAGGAAGCGGGGAGGGA
AGTGAAATGAATGGAACCCTCCTCCGACCCGTCCTCCCCCTCTCCCCCTT
TCTTCTCCTGGCGACAGCGCATCACACTTCTCACCCAAAAAGAAGCTCAA
GCCATAGACGAAGAGTTAATGAGCACTCCTGGTTTCTCCGTCGATCAACT
AATGGAGCTAGCAGGCTTGTCGGTCTCCCATGCTGTCGACCACTTCCTCC
AACAACCCGCCCGGTCTGCCTCCATCCTCATTCTCTGCGGGCCGGGAAAT
AACGGAGGCGATGGTCTAGTGGCTGCGCGTCATTTGTTTCATCTTGGGTA
CTGTCCTGTGGTTGTCTATCCGAAGCGATCGAACAAGCCTTTGTTCGTCA
ACTTGGTCAAGCAGTGCGAGGACCTGGGGGTGGAGGTGGGGGTGGAACTC
CCAGGGGATATCGAGGGCAGGTTCGATTGTGTCATAGATGCCTTGTTTGG
CTTCGGAACGAAGGGGGCATTACGGGCGCCATTCGATGCGATCATGCAGA
GGCTAACCGAGATTACTACGCCCATTGTGTCGGTGGATATCCCGTCAG
back to top
Synonyms
Publications