jgi.p|Nanoce1779_2|584683, mRNA_3133 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584683
Unique Name	mRNA_3133
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1945
Alignment location	scaffold_7:734137..736081 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584769
Track	FilteredModels2
ProteinId	584683

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:734137..736081 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584683	gene_3133	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584683	mRNA_3133-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3133	CDS_3133	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:734137..736081+
coding sequence from alignment at scaffold_7:734137..736081+

mRNA sequence

>mRNA_3133 ID=mRNA_3133|Name=jgi.p|Nanoce1779_2|584683|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp
ACAGGCATAAAGGAGACCCGTCTCCTTCCGTTTTACGACCTTCACCACCT
CATCCCACCCCAGACAAACCATTCAGCCATGAAGGTACAAGCAACCCTCT
TCCTGGGTGCGGCAATTGCTACTACCACTACCACCACCGTGGCCTTCCTC
GTCCCCGCCCCTATCTCTCACTCTAGCCTCCTCTCAAGAACAACAAGTTC
CTTCACCGGCGCGGCCACGGGCGCAAGCCGCACGAGCGCCCGACAAGGCA
CCAACCAGTCTCGTCTATTTGCTCAGTCCACGACGAACACGGAGCTGCAT
ATGTCTTTGCAGCCCGAGGGTGGGGGACTGCCCTGCCAGATCAAGGTAAT
GGGAGTAGGCGGCGCAGGCGGCAACGCCGTGAACCGGATGATTGAGGAGT
CTGTGGCCGGCGTGGAGTTCTGGGCGATCAACACGGACGCCCAGGCGTTG
AAGTCGCACAAGGCAGAAAAGAAGCTGAACATTGGACAGCAGGTGACGAG
GGGATTAGGTGCGGGTGGGATTCCTGACATTGGTCGACGGGCCGCTGAAG
AGAGCAGGGCCGAGATCGCAGATGCTGTGAAGGGGGCGGATTTGGTATTT
GTGACGGCGGGGATGGGAGGGGGGACGGGTTCGGGTGCTGCGCCGGTTGT
GGCGGAGGTGGCGAAGGAGATGGGGGCGCTGACAATCGGTGTTGTGACAA
AGCCGTTTCAGTTCGAGGGACGCAGGAGGTTGAACCAGGCCACGATGGCC
ATTGAGGAGTTGGGCAAGGCGGTGGACACATTGATTGTGGTGAGCAACGA
CAAGTTGTTGCAGATCATCGAGCAGAACACACCGTTGGACAAGGCGTTCA
AGGTCGCTGATGATATTTTGCGAAATGGCGTGGTCGGGATTACCGAGATC
ATTGTAAGGCCTGGTTTAATTAATGTCGATTTTGCCGATGTCCGCTCCAT
CATGGGCAACGCCGGCACGGCTCTCATGGGGATGGGTGAGGGTGTAGGGA
AATCCCGCGCGGTCGAGGCGGCGGCGGCAGCGATTTCTAGTCCGTTGCTG
GAGTTCCCTGTGAACAACGCTAAGGGGATTGTGTTTAACATTATGGGCGG
CCCGGATATGACGCTGCAGGAGATCAACTTGGCGAGTAATTACATCTACG
ACAACGTGGACCCGAACGCGAACATTATCTTTGGGGCGTTGGTGGATGAG
AAATTGGGCGACAAGGTCCGAATCACGGTTTTGGCGACTGGTTTTGACAA
CGCCGGCAAGAGCAGCAGCACCAGCAGCACCCTGCCCCTGACGGTCGGGA
AGAAGGACTCCGCTTCCAAGCAACAGCAGTCCCCCTCCTCCTCTTCCTCG
TCCAGTAGCCTATCTACGACTGCCGCAGGAGCCGCGGCTGCTGCCAATGC
GCGACAGCAGCAGATGGATGACGACCTTGCTTTGAGCGAGGATCGCCTTC
CTGCCCGCCCCAAGGAGCCTGTTTACCAGCAGCAGCCACCACCCCCTCCC
CCTGCCCAGCAAGCCCCCCAGCAAGACCAAAGCTTTCTGCAAAGCTTCCG
ACGGATGTAAAAGAAGGAGAAGGAGTTCAGAGGGAAGAAGGGCCAGGGAG
CGCGAGGAGGGAGAGGCAAGTTAATTACTTTTTTTTATTCTCATTTTTTC
GTCGTCGTCGTTGTCTTGGAGAATGTGAGGACTTCGAAAAGAAGAGAAGG
AAGGCATGGGTGGATGGATAGATATGTGGATGGATGGAGGGAAAAAGGAA
GAGTGAAGAGAGAAGAGAGAAAGCACCCCGTTCTGGTAGTAAGAGGATGA
AAGGAAGACATCATATGAGTGCACCCACATCCCGATTTTCATTTTTTACG
TGTTTCTGTGTCTTGGTTGAAAATATTGAAAAGAAGGAACGAGAGGGTGA
GATATAGAAGTAGAAAAGGTGCTTGAATGGTCAGTATCTCGGGGA

protein sequence of jgi.p|Nanoce1779_2|584683

>mRNA_3133-protein ID=mRNA_3133-protein|Name=jgi.p|Nanoce1779_2|584683|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MKVQATLFLGAAIATTTTTTVAFLVPAPISHSSLLSRTTSSFTGAATGAS
RTSARQGTNQSRLFAQSTTNTELHMSLQPEGGGLPCQIKVMGVGGAGGNA
VNRMIEESVAGVEFWAINTDAQALKSHKAEKKLNIGQQVTRGLGAGGIPD
IGRRAAEESRAEIADAVKGADLVFVTAGMGGGTGSGAAPVVAEVAKEMGA
LTIGVVTKPFQFEGRRRLNQATMAIEELGKAVDTLIVVSNDKLLQIIEQN
TPLDKAFKVADDILRNGVVGITEIIVRPGLINVDFADVRSIMGNAGTALM
GMGEGVGKSRAVEAAAAAISSPLLEFPVNNAKGIVFNIMGGPDMTLQEIN
LASNYIYDNVDPNANIIFGALVDEKLGDKVRITVLATGFDNAGKSSSTSS
TLPLTVGKKDSASKQQQSPSSSSSSSSLSTTAAGAAAAANARQQQMDDDL
ALSEDRLPARPKEPVYQQQPPPPPPAQQAPQQDQSFLQSFRRM*

mRNA from alignment at scaffold_7:734137..736081+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3133 ID=mRNA_3133|Name=jgi.p|Nanoce1779_2|584683|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at scaffold_7:734137..736081+ (Nannochloropsis oceanica)
ACAGGCATAAAGGAGACCCGTCTCCTTCCGTTTTACGACCTTCACCACCT
CATCCCACCCCAGACAAACCATTCAGCCATGAAGGTACAAGCAACCCTCT
TCCTGGGTGCGGCAATTGCTACTACCACTACCACCACCGTGGCCTTCCTC
GTCCCCGCCCCTATCTCTCACTCTAGCCTCCTCTCAAGAACAACAAGTTC
CTTCACCGGCGCGGCCACGGGCGCAAGCCGCACGAGCGCCCGACAAGGCA
CCAACCAGTCTCGTCTATTTGCTCAGTCCACGACGAACACGGAGCTGCAT
ATGTCTTTGCAGCCCGAGGGTGGGGGACTGCCCTGCCAGATCAAGGTAAT
GGGAGTAGGCGGCGCAGGCGGCAACGCCGTGAACCGGATGATTGAGGAGT
CTGTGGCCGGCGTGGAGTTCTGGGCGATCAACACGGACGCCCAGGCGTTG
AAGTCGCACAAGGCAGAAAAGAAGCTGAACATTGGACAGCAGGTGACGAG
GGGATTAGGTGCGGGTGGGATTCCTGACATTGGTCGACGGGCCGCTGAAG
AGAGCAGGGCCGAGATCGCAGATGCTGTGAAGGGGGCGGATTTGGTATTT
GTGACGGCGGGGATGGGAGGGGGGACGGGTTCGGGTGCTGCGCCGGTTGT
GGCGGAGGTGGCGAAGGAGATGGGGGCGCTGACAATCGGTGTTGTGACAA
AGCCGTTTCAGTTCGAGGGACGCAGGAGGTTGAACCAGGCCACGATGGCC
ATTGAGGAGTTGGGCAAGGCGGTGGACACATTGATTGTGGTGAGCAACGA
CAAGTTGTTGCAGATCATCGAGCAGAACACACCGTTGGACAAGGCGTTCA
AGGTCGCTGATGATATTTTGCGAAATGGCGTGGTCGGGATTACCGAGATC
ATTGTAAGGCCTGGTTTAATTAATGTCGATTTTGCCGATGTCCGCTCCAT
CATGGGCAACGCCGGCACGGCTCTCATGGGGATGGGTGAGGGTGTAGGGA
AATCCCGCGCGGTCGAGGCGGCGGCGGCAGCGATTTCTAGTCCGTTGCTG
GAGTTCCCTGTGAACAACGCTAAGGGGATTGTGTTTAACATTATGGGCGG
CCCGGATATGACGCTGCAGGAGATCAACTTGGCGAGTAATTACATCTACG
ACAACGTGGACCCGAACGCGAACATTATCTTTGGGGCGTTGGTGGATGAG
AAATTGGGCGACAAGGTCCGAATCACGGTTTTGGCGACTGGTTTTGACAA
CGCCGGCAAGAGCAGCAGCACCAGCAGCACCCTGCCCCTGACGGTCGGGA
AGAAGGACTCCGCTTCCAAGCAACAGCAGTCCCCCTCCTCCTCTTCCTCG
TCCAGTAGCCTATCTACGACTGCCGCAGGAGCCGCGGCTGCTGCCAATGC
GCGACAGCAGCAGATGGATGACGACCTTGCTTTGAGCGAGGATCGCCTTC
CTGCCCGCCCCAAGGAGCCTGTTTACCAGCAGCAGCCACCACCCCCTCCC
CCTGCCCAGCAAGCCCCCCAGCAAGACCAAAGCTTTCTGCAAAGCTTCCG
ACGGATGTAAAAGAAGGAGAAGGAGTTCAGAGGGAAGAAGGGCCAGGGAG
CGCGAGGAGGGAGAGGCAAGTTAATTACTTTTTTTTATTCTCATTTTTTC
GTCGTCGTCGTTGTCTTGGAGAATGTGAGGACTTCGAAAAGAAGAGAAGG
AAGGCATGGGTGGATGGATAGATATGTGGATGGATGGAGGGAAAAAGGAA
GAGTGAAGAGAGAAGAGAGAAAGCACCCCGTTCTGGTAGTAAGAGGATGA
AAGGAAGACATCATATGAGTGCACCCACATCCCGATTTTCATTTTTTACG
TGTTTCTGTGTCTTGGTTGAAAATATTGAAAAGAAGGAACGAGAGGGTGA
GATATAGAAGTAGAAAAGGTGCTTGAATGGTCAGTATCTCGGGGA

Coding sequence (CDS) from alignment at scaffold_7:734137..736081+

>mRNA_3133 ID=mRNA_3133|Name=jgi.p|Nanoce1779_2|584683|organism=Nannochloropsis oceanica|type=CDS|length=1482bp|location=Sequence derived from alignment at scaffold_7:734137..736081+ (Nannochloropsis oceanica)
ATGAAGGTACAAGCAACCCTCTTCCTGGGTGCGGCAATTGCTACTACCAC
TACCACCACCGTGGCCTTCCTCGTCCCCGCCCCTATCTCTCACTCTAGCC
TCCTCTCAAGAACAACAAGTTCCTTCACCGGCGCGGCCACGGGCGCAAGC
CGCACGAGCGCCCGACAAGGCACCAACCAGTCTCGTCTATTTGCTCAGTC
CACGACGAACACGGAGCTGCATATGTCTTTGCAGCCCGAGGGTGGGGGAC
TGCCCTGCCAGATCAAGGTAATGGGAGTAGGCGGCGCAGGCGGCAACGCC
GTGAACCGGATGATTGAGGAGTCTGTGGCCGGCGTGGAGTTCTGGGCGAT
CAACACGGACGCCCAGGCGTTGAAGTCGCACAAGGCAGAAAAGAAGCTGA
ACATTGGACAGCAGGTGACGAGGGGATTAGGTGCGGGTGGGATTCCTGAC
ATTGGTCGACGGGCCGCTGAAGAGAGCAGGGCCGAGATCGCAGATGCTGT
GAAGGGGGCGGATTTGGTATTTGTGACGGCGGGGATGGGAGGGGGGACGG
GTTCGGGTGCTGCGCCGGTTGTGGCGGAGGTGGCGAAGGAGATGGGGGCG
CTGACAATCGGTGTTGTGACAAAGCCGTTTCAGTTCGAGGGACGCAGGAG
GTTGAACCAGGCCACGATGGCCATTGAGGAGTTGGGCAAGGCGGTGGACA
CATTGATTGTGGTGAGCAACGACAAGTTGTTGCAGATCATCGAGCAGAAC
ACACCGTTGGACAAGGCGTTCAAGGTCGCTGATGATATTTTGCGAAATGG
CGTGGTCGGGATTACCGAGATCATTGTAAGGCCTGGTTTAATTAATGTCG
ATTTTGCCGATGTCCGCTCCATCATGGGCAACGCCGGCACGGCTCTCATG
GGGATGGGTGAGGGTGTAGGGAAATCCCGCGCGGTCGAGGCGGCGGCGGC
AGCGATTTCTAGTCCGTTGCTGGAGTTCCCTGTGAACAACGCTAAGGGGA
TTGTGTTTAACATTATGGGCGGCCCGGATATGACGCTGCAGGAGATCAAC
TTGGCGAGTAATTACATCTACGACAACGTGGACCCGAACGCGAACATTAT
CTTTGGGGCGTTGGTGGATGAGAAATTGGGCGACAAGGTCCGAATCACGG
TTTTGGCGACTGGTTTTGACAACGCCGGCAAGAGCAGCAGCACCAGCAGC
ACCCTGCCCCTGACGGTCGGGAAGAAGGACTCCGCTTCCAAGCAACAGCA
GTCCCCCTCCTCCTCTTCCTCGTCCAGTAGCCTATCTACGACTGCCGCAG
GAGCCGCGGCTGCTGCCAATGCGCGACAGCAGCAGATGGATGACGACCTT
GCTTTGAGCGAGGATCGCCTTCCTGCCCGCCCCAAGGAGCCTGTTTACCA
GCAGCAGCCACCACCCCCTCCCCCTGCCCAGCAAGCCCCCCAGCAAGACC
AAAGCTTTCTGCAAAGCTTCCGACGGATGTAA

Synonyms

Publications