jgi.p|Nanoce1779_2|397861, mRNA_3131 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|397861
Unique NamemRNA_3131
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1572
Alignment locationscaffold_7:727266..728837 +

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Properties
Property NameValue
TranscriptId397947
TrackFilteredModels2
ProteinId397861
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:727266..728837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|397861gene_3131Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|397861mRNA_3131-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3131CDS_3131Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3131 ID=mRNA_3131|Name=jgi.p|Nanoce1779_2|397861|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp
ACAAGTAGCTTATAATTTAAAATGAGTTGTATTAAGTCTGTACAATTGCT
GTTAATGCAATCCTCCTTTCTTGCGCCCGTTTTTCAACACAGGCGTGTCT
TGCCAAGAAGAAGGAAGATGCCGTCGTCGATAGGACTAGCAGCAGCAATA
CCACTCCAGCTCCACCTGTCTTCCACTCCCCTGCCTTCATTTTTACCTTG
GAAGATCACTATGACAACGTTATGCAAGACCTCGCAGTCCGTCGAGGCAT
TCTTGCTGTAGCAGAAGCCCTCTCCAGTTTCCTCAACAGCAGCAGCGGCA
CCTCCACCACCATCACAGCCCCTACATCACGCAAAGAAATTGCGTCCCTC
TTGCTCACGATCCAATGTAACGCCCACGGTATACGCAATTCTCTGGGGCA
GATGCTAGGCCTTGGGCTATTTCCTCTCGCGTCAATGCTGAATCATTCTT
GCCTTCCTTCATGCCACCATGTCTTTTCCCTCCATCCTGGGCAAGGACCA
CCAACCTTAACTTTCAAAACTTTGCGTCCGATTCAAGAAGGTGAAGAGCT
TGTGTATAGCTACACGGACTTGATGCGGCCAGGGGGAATGCGAAGGGAGA
TATTAGGGAGGGCTTACTCTTTCACGTGTGCGTGTGCGAGGTGTCTGATA
ACTCTAGGAGGGGGGATAGGGGAAGGAGGGGGGAAGAGAGAGGCTATGGG
CAGTAGTGGTCTTGCCAATGCTTTGACCGAATGGGCATTGGAATCCCCGG
CATGTGATTCCCCCGGATGTGTTGGAGCATTGTGCTCGCTGCAAGGGGAG
GTGAAGGAAGTAGAAGAGGATGGTAATGGTGACGATAAGGAGAGATATGA
GCCTAGTGAATGTAGCATGTGGAAGTGTTTGGAATGTGGAAAGCAGGAAG
AAACAGCGGAGGTGCAGTCAAAACTGATTGCTGCTACGACACTGCTGCAA
GCCTGCTTATTTGCGTTACAAGAGGAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCCACATAATGGAGGAGGCATCGCAGCGCTACCGGCAATGCCCC
TTTCGGATGCAGCTTACTCGCTGGCATCTCATCTCTTTGGAAGCAACCCA
CCCTTGAGGCTGCATGTCCGACATTGGTTAGTCTACCATGCGTTAACCTC
ACTAAGTCAGCACCTCATGCCCGCGATGACGGCCACTCACGCTGGAGAAA
GGGGAGAAGAGAAGACAGAATTATCAACAGGGGGGGAAGGTGAAGAGGTG
GCTTGGCTCCGGGCTGCATGCGAAGTATGGATGCTTTGCAATCTCTGGCG
GCTCAGTGGTTGGATCGAGGGCAAGAGTAAAGATGCGAAGGAGATTAATT
ATTATCCGGAATTGGGGCAGCGGCTTGTGGCGACAGGGAAGGCTTTGCTG
GACTACAGAGCGTCGACGGGTGGATCGAAGAAGTTTGAGGAGGAGAAGAA
ATGCGGTGCGTGGAGATTACCGGCTGTTTACCATGAATTTAATGATGTGA
TTGTTCGAGGTCCGCAGGCCTTGCTGCATTTGGGCCAGAAGATTTTAAGG
GCGAGTAATTATTAGGAAATGA
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protein sequence of jgi.p|Nanoce1779_2|397861

>mRNA_3131-protein ID=mRNA_3131-protein|Name=jgi.p|Nanoce1779_2|397861|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MQDLAVRRGILAVAEALSSFLNSSSGTSTTITAPTSRKEIASLLLTIQCN
AHGIRNSLGQMLGLGLFPLASMLNHSCLPSCHHVFSLHPGQGPPTLTFKT
LRPIQEGEELVYSYTDLMRPGGMRREILGRAYSFTCACARCLITLGGGIG
EGGGKREAMGSSGLANALTEWALESPACDSPGCVGALCSLQGEVKEVEED
GNGDDKERYEPSECSMWKCLECGKQEETAEVQSKLIAATTLLQACLFALQ
EEQQQQQQQQQQPHNGGGIAALPAMPLSDAAYSLASHLFGSNPPLRLHVR
HWLVYHALTSLSQHLMPAMTATHAGERGEEKTELSTGGEGEEVAWLRAAC
EVWMLCNLWRLSGWIEGKSKDAKEINYYPELGQRLVATGKALLDYRASTG
GSKKFEEEKKCGAWRLPAVYHEFNDVIVRGPQALLHLGQKILRASNY*
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mRNA from alignment at scaffold_7:727266..728837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3131 ID=mRNA_3131|Name=jgi.p|Nanoce1779_2|397861|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp|location=Sequence derived from alignment at scaffold_7:727266..728837+ (Nannochloropsis oceanica)
ACAAGTAGCTTATAATTTAAAATGAGTTGTATTAAGTCTGTACAATTGCT
GTTAATGCAATCCTCCTTTCTTGCGCCCGTTTTTCAACACAGGCGTGTCT
TGCCAAGAAGAAGGAAGATGCCGTCGTCGATAGGACTAGCAGCAGCAATA
CCACTCCAGCTCCACCTGTCTTCCACTCCCCTGCCTTCATTTTTACCTTG
GAAGATCACTATGACAACGTTATGCAAGACCTCGCAGTCCGTCGAGGCAT
TCTTGCTGTAGCAGAAGCCCTCTCCAGTTTCCTCAACAGCAGCAGCGGCA
CCTCCACCACCATCACAGCCCCTACATCACGCAAAGAAATTGCGTCCCTC
TTGCTCACGATCCAATGTAACGCCCACGGTATACGCAATTCTCTGGGGCA
GATGCTAGGCCTTGGGCTATTTCCTCTCGCGTCAATGCTGAATCATTCTT
GCCTTCCTTCATGCCACCATGTCTTTTCCCTCCATCCTGGGCAAGGACCA
CCAACCTTAACTTTCAAAACTTTGCGTCCGATTCAAGAAGGTGAAGAGCT
TGTGTATAGCTACACGGACTTGATGCGGCCAGGGGGAATGCGAAGGGAGA
TATTAGGGAGGGCTTACTCTTTCACGTGTGCGTGTGCGAGGTGTCTGATA
ACTCTAGGAGGGGGGATAGGGGAAGGAGGGGGGAAGAGAGAGGCTATGGG
CAGTAGTGGTCTTGCCAATGCTTTGACCGAATGGGCATTGGAATCCCCGG
CATGTGATTCCCCCGGATGTGTTGGAGCATTGTGCTCGCTGCAAGGGGAG
GTGAAGGAAGTAGAAGAGGATGGTAATGGTGACGATAAGGAGAGATATGA
GCCTAGTGAATGTAGCATGTGGAAGTGTTTGGAATGTGGAAAGCAGGAAG
AAACAGCGGAGGTGCAGTCAAAACTGATTGCTGCTACGACACTGCTGCAA
GCCTGCTTATTTGCGTTACAAGAGGAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCCACATAATGGAGGAGGCATCGCAGCGCTACCGGCAATGCCCC
TTTCGGATGCAGCTTACTCGCTGGCATCTCATCTCTTTGGAAGCAACCCA
CCCTTGAGGCTGCATGTCCGACATTGGTTAGTCTACCATGCGTTAACCTC
ACTAAGTCAGCACCTCATGCCCGCGATGACGGCCACTCACGCTGGAGAAA
GGGGAGAAGAGAAGACAGAATTATCAACAGGGGGGGAAGGTGAAGAGGTG
GCTTGGCTCCGGGCTGCATGCGAAGTATGGATGCTTTGCAATCTCTGGCG
GCTCAGTGGTTGGATCGAGGGCAAGAGTAAAGATGCGAAGGAGATTAATT
ATTATCCGGAATTGGGGCAGCGGCTTGTGGCGACAGGGAAGGCTTTGCTG
GACTACAGAGCGTCGACGGGTGGATCGAAGAAGTTTGAGGAGGAGAAGAA
ATGCGGTGCGTGGAGATTACCGGCTGTTTACCATGAATTTAATGATGTGA
TTGTTCGAGGTCCGCAGGCCTTGCTGCATTTGGGCCAGAAGATTTTAAGG
GCGAGTAATTATTAGGAAATGA
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Coding sequence (CDS) from alignment at scaffold_7:727266..728837+

>mRNA_3131 ID=mRNA_3131|Name=jgi.p|Nanoce1779_2|397861|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_7:727266..728837+ (Nannochloropsis oceanica)
ATGCAAGACCTCGCAGTCCGTCGAGGCATTCTTGCTGTAGCAGAAGCCCT
CTCCAGTTTCCTCAACAGCAGCAGCGGCACCTCCACCACCATCACAGCCC
CTACATCACGCAAAGAAATTGCGTCCCTCTTGCTCACGATCCAATGTAAC
GCCCACGGTATACGCAATTCTCTGGGGCAGATGCTAGGCCTTGGGCTATT
TCCTCTCGCGTCAATGCTGAATCATTCTTGCCTTCCTTCATGCCACCATG
TCTTTTCCCTCCATCCTGGGCAAGGACCACCAACCTTAACTTTCAAAACT
TTGCGTCCGATTCAAGAAGGTGAAGAGCTTGTGTATAGCTACACGGACTT
GATGCGGCCAGGGGGAATGCGAAGGGAGATATTAGGGAGGGCTTACTCTT
TCACGTGTGCGTGTGCGAGGTGTCTGATAACTCTAGGAGGGGGGATAGGG
GAAGGAGGGGGGAAGAGAGAGGCTATGGGCAGTAGTGGTCTTGCCAATGC
TTTGACCGAATGGGCATTGGAATCCCCGGCATGTGATTCCCCCGGATGTG
TTGGAGCATTGTGCTCGCTGCAAGGGGAGGTGAAGGAAGTAGAAGAGGAT
GGTAATGGTGACGATAAGGAGAGATATGAGCCTAGTGAATGTAGCATGTG
GAAGTGTTTGGAATGTGGAAAGCAGGAAGAAACAGCGGAGGTGCAGTCAA
AACTGATTGCTGCTACGACACTGCTGCAAGCCTGCTTATTTGCGTTACAA
GAGGAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCACATAATGGAGG
AGGCATCGCAGCGCTACCGGCAATGCCCCTTTCGGATGCAGCTTACTCGC
TGGCATCTCATCTCTTTGGAAGCAACCCACCCTTGAGGCTGCATGTCCGA
CATTGGTTAGTCTACCATGCGTTAACCTCACTAAGTCAGCACCTCATGCC
CGCGATGACGGCCACTCACGCTGGAGAAAGGGGAGAAGAGAAGACAGAAT
TATCAACAGGGGGGGAAGGTGAAGAGGTGGCTTGGCTCCGGGCTGCATGC
GAAGTATGGATGCTTTGCAATCTCTGGCGGCTCAGTGGTTGGATCGAGGG
CAAGAGTAAAGATGCGAAGGAGATTAATTATTATCCGGAATTGGGGCAGC
GGCTTGTGGCGACAGGGAAGGCTTTGCTGGACTACAGAGCGTCGACGGGT
GGATCGAAGAAGTTTGAGGAGGAGAAGAAATGCGGTGCGTGGAGATTACC
GGCTGTTTACCATGAATTTAATGATGTGATTGTTCGAGGTCCGCAGGCCT
TGCTGCATTTGGGCCAGAAGATTTTAAGGGCGAGTAATTATTAG
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Synonyms
Publications